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Conserved domains on  [gi|1958658111|ref|XP_038941781|]
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serine/arginine repetitive matrix protein 2 isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
cwf21_SRRM2 cd21375
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ...
 39-102 4.25e-31

cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


:

Pssm-ID: 410601 [Multi-domain]  Cd Length: 64  Bit Score: 117.42  E-value: 4.25e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958658111   39 EEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375      1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 1985-2442 4.34e-11

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 69.20  E-value: 4.34e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 1985 RSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVA 2064
Cdd:PHA03247  2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVS 2662

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2065 LsSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGS----ARTPmsvlqqtggsmmdGPGPRIPDHPRSSVPENHAQSRIALA 2140
Cdd:PHA03247  2663 R-PRRARRLGRAAQASSPPQRPRRRAARPTVGSltslADPP-------------PPPPTPEPAPHALVSATPLPPGPAAA 2728

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2141 LTAISLGTARPPPSMSAAGLAARMSqvPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAA 2220
Cdd:PHA03247  2729 RQASPALPAAPAPPAVPAGPATPGG--PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2221 AAAMnlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAgnyPSSSRTPQAPTPANLVGPRSA 2300
Cdd:PHA03247  2807 PPAA--VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG---DVRRRPPSRSPAAKPAAPARP 2881

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2301 HGTAPVNIAGSRTPAALAPTNLSSSRM-APALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSER 2379
Cdd:PHA03247  2882 PVRRLARPAVSRSTESFALPPDQPERPpQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ 2961

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958658111 2380 ERAPSPASRMVQAPSQSLLPPAQDRPrSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTS 2442
Cdd:PHA03247  2962 PWLGALVPGRVAVPRFRVPQPAPSRE-APASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 292-609 2.52e-07

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 56.72  E-value: 2.52e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  292 TGQSPPLASGHQGEVDAPSEPGatniQQPSSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPT-PLLVEQ 370
Cdd:PHA03307    89 TWSLSTLAPASPAREGSPTPPG----PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGAsPAAVAS 164

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  371 HGDSPRPLA-AIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSssescppspqptklsRHASSSPESLKPTPAPGsrre 449
Cdd:PHA03307   165 DAASSRQAAlPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR---------------RSSPISASASSPAPAPG---- 225

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  450 isssptsknRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGR 529
Cdd:PHA03307   226 ---------RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  530 SRSPQRPGwSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRG 609
Cdd:PHA03307   297 SPSPSSPG-SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAP 375
 
Name Accession Description Interval E-value
cwf21_SRRM2 cd21375
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ...
 39-102 4.25e-31

cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410601 [Multi-domain]  Cd Length: 64  Bit Score: 117.42  E-value: 4.25e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958658111   39 EEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375      1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1985-2442 4.34e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 69.20  E-value: 4.34e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 1985 RSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVA 2064
Cdd:PHA03247  2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVS 2662

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2065 LsSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGS----ARTPmsvlqqtggsmmdGPGPRIPDHPRSSVPENHAQSRIALA 2140
Cdd:PHA03247  2663 R-PRRARRLGRAAQASSPPQRPRRRAARPTVGSltslADPP-------------PPPPTPEPAPHALVSATPLPPGPAAA 2728

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2141 LTAISLGTARPPPSMSAAGLAARMSqvPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAA 2220
Cdd:PHA03247  2729 RQASPALPAAPAPPAVPAGPATPGG--PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2221 AAAMnlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAgnyPSSSRTPQAPTPANLVGPRSA 2300
Cdd:PHA03247  2807 PPAA--VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG---DVRRRPPSRSPAAKPAAPARP 2881

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2301 HGTAPVNIAGSRTPAALAPTNLSSSRM-APALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSER 2379
Cdd:PHA03247  2882 PVRRLARPAVSRSTESFALPPDQPERPpQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ 2961

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958658111 2380 ERAPSPASRMVQAPSQSLLPPAQDRPrSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTS 2442
Cdd:PHA03247  2962 PWLGALVPGRVAVPRFRVPQPAPSRE-APASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
cwf21 pfam08312
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ...
 58-101 1.51e-07

cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.


Pssm-ID: 462421 [Multi-domain]  Cd Length: 44  Bit Score: 49.73  E-value: 1.51e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1958658111   58 LDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK 101
Cdd:pfam08312    1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 292-609 2.52e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 56.72  E-value: 2.52e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  292 TGQSPPLASGHQGEVDAPSEPGatniQQPSSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPT-PLLVEQ 370
Cdd:PHA03307    89 TWSLSTLAPASPAREGSPTPPG----PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGAsPAAVAS 164

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  371 HGDSPRPLA-AIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSssescppspqptklsRHASSSPESLKPTPAPGsrre 449
Cdd:PHA03307   165 DAASSRQAAlPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR---------------RSSPISASASSPAPAPG---- 225

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  450 isssptsknRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGR 529
Cdd:PHA03307   226 ---------RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  530 SRSPQRPGwSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRG 609
Cdd:PHA03307   297 SPSPSSPG-SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAP 375
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 480-600 4.77e-04

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 45.65  E-value: 4.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  480 RSRSPATKRGRSRSRTPTK-RGHSRSRSpqwrRSRSAQRWGKSRSPQRRGRSRSpqrpgwsRSRNTQRRGRSRSARRGRS 558
Cdd:TIGR01642    5 PDREREKSRGRDRDRSSERpRRRSRDRS----RFRDRHRRSRERSYREDSRPRD-------RRRYDSRSPRSLRYSSVRR 73

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1958658111  559 HSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRtpaRRRS 600
Cdd:TIGR01642   74 SRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDD---KKRS 112
RSRP pfam17069
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
 435-603 1.55e-03

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 43.23  E-value: 1.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  435 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 509
Cdd:pfam17069   10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  510 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 589
Cdd:pfam17069   90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160

                          170
                   ....*....|....
gi 1958658111  590 SRSRTPARRRSRSR 603
Cdd:pfam17069  161 SRSRTPFRLSEKER 174
 
Name Accession Description Interval E-value
cwf21_SRRM2 cd21375
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ...
 39-102 4.25e-31

cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410601 [Multi-domain]  Cd Length: 64  Bit Score: 117.42  E-value: 4.25e-31
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958658111   39 EEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375      1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
cwf21_SRRM3 cd21376
cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine ...
 37-102 3.44e-23

cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine/arginine repetitive matrix protein 3 (SRRM3) may play a role in regulating breast cancer cell invasiveness. It may also be involved in RYBP-mediated breast cancer progression. SRRM3 contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410602 [Multi-domain]  Cd Length: 68  Bit Score: 95.19  E-value: 3.44e-23
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958658111   37 KGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21376      1 KSEEEIKKLDAALVKKPNREILDHERKRKVELKCMEMQELMEEQGYTEEEIRQKVSTFRQMLMEKE 66
cwf21_SRRM2-like cd21373
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar ...
 53-102 5.78e-17

cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar proteins; This subfamily includes SRRM2 and SRRM3, both of which contain a cwf21 domain at the N-terminus. SRRM2, also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803), is required for pre-mRNA splicing as component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410600 [Multi-domain]  Cd Length: 50  Bit Score: 76.84  E-value: 5.78e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1958658111   53 PNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21373      1 PNKEILDHERKRKIEVKCLELEDLLEEQGYTEEEIQAKVDEYRALLLEKD 50
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1985-2442 4.34e-11

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 69.20  E-value: 4.34e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 1985 RSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVA 2064
Cdd:PHA03247  2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVS 2662

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2065 LsSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGS----ARTPmsvlqqtggsmmdGPGPRIPDHPRSSVPENHAQSRIALA 2140
Cdd:PHA03247  2663 R-PRRARRLGRAAQASSPPQRPRRRAARPTVGSltslADPP-------------PPPPTPEPAPHALVSATPLPPGPAAA 2728

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2141 LTAISLGTARPPPSMSAAGLAARMSqvPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAA 2220
Cdd:PHA03247  2729 RQASPALPAAPAPPAVPAGPATPGG--PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2221 AAAMnlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAgnyPSSSRTPQAPTPANLVGPRSA 2300
Cdd:PHA03247  2807 PPAA--VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG---DVRRRPPSRSPAAKPAAPARP 2881

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2301 HGTAPVNIAGSRTPAALAPTNLSSSRM-APALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSER 2379
Cdd:PHA03247  2882 PVRRLARPAVSRSTESFALPPDQPERPpQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ 2961

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958658111 2380 ERAPSPASRMVQAPSQSLLPPAQDRPrSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTS 2442
Cdd:PHA03247  2962 PWLGALVPGRVAVPRFRVPQPAPSRE-APASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
cwf21_CWC21-like cd21372
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This ...
 54-102 3.95e-10

cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This subfamily includes complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. Both CWC21 and CWF21 are pre-mRNA-splicing factors that may function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome, together with ISY1. SRRM2 is required for pre-mRNA splicing as a component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. Members of this family contain a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410599 [Multi-domain]  Cd Length: 49  Bit Score: 57.10  E-value: 3.95e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1958658111   54 NPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21372      1 DKEILEHERKRQIELKCLELRDELEDEGLSEEEIEEKVDELREKLLKEL 49
cwf21 cd21369
cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the ...
 55-101 1.20e-09

cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevents its binding to Prp8. The domain is composed of two alpha helices. Proteins containing the cwf21 domain include complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. This domain family also includes U2-associated protein SR140 from Eumetazoa, protein RRC1, and similar proteins from plants.


Pssm-ID: 410596 [Multi-domain]  Cd Length: 48  Bit Score: 55.94  E-value: 1.20e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1958658111   55 PDILDHERKRRVELRCLELEEMMEEQG-YEEQQIQEKVATFRLMLLEK 101
Cdd:cd21369      1 MDEEKRAKKREIELKVMELRDELEEQGrKPEQQIQEKVEHYRDKLLQR 48
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2047-2484 1.36e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 61.11  E-value: 1.36e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2047 ATPPATRNHS--GSRTPPVALSSSRMSCFSRPSMSPTPlDRCRSPGmlEPLGSARTPMsvlqQTGGSMMDGPGPRIPDHP 2124
Cdd:PHA03247  2558 AAPPAAPDRSvpPPRPAPRPSEPAVTSRARRPDAPPQS-ARPRAPV--DDRGDPRGPA----PPSPLPPDTHAPDPPPPS 2630

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2125 RSSVPENHAQSRIALA------LTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLR--TAPAANLAsRIPAASAAAM 2196
Cdd:PHA03247  2631 PSPAANEPDPHPPPTVppperpRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARptVGSLTSLA-DPPPPPPTPE 2709

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2197 NLASARTSAIPASVNLADSRT---PAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTgsgTP 2273
Cdd:PHA03247  2710 PAPHALVSATPLPPGPAAARQaspALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT---RP 2786

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2274 PTAGNYPSSSRTPQAPTPANLVGPRSAHGTApvnIAGSRTPAALAPTNLSSSRMAPALsganltsPRVPLSAYERVSGRT 2353
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPADPPAAVLAPAAA---LPPAASPAGPLPPPTSAQPTAPPP-------PPGPPPPSLPLGGSV 2856

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2354 SP--LLLDRARSRTPPSAPSQSRMTSERERAPSPASRMVQAPSQSLLPPAQDR-PRSPVPSAFSDQSRSIAQTTPVAGSQ 2430
Cdd:PHA03247  2857 APggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPqPQAPPPPQPQPQPPPPPQPQPPPPPP 2936

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1958658111 2431 SLSSGTVAKSTSSASDHNGMLSGPAPGVSHAEGGEPHASTGAQQPSALAVLQPA 2484
Cdd:PHA03247  2937 PRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
cwf21 pfam08312
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ...
 58-101 1.51e-07

cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.


Pssm-ID: 462421 [Multi-domain]  Cd Length: 44  Bit Score: 49.73  E-value: 1.51e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1958658111   58 LDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK 101
Cdd:pfam08312    1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 292-609 2.52e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 56.72  E-value: 2.52e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  292 TGQSPPLASGHQGEVDAPSEPGatniQQPSSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPT-PLLVEQ 370
Cdd:PHA03307    89 TWSLSTLAPASPAREGSPTPPG----PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGAsPAAVAS 164

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  371 HGDSPRPLA-AIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSssescppspqptklsRHASSSPESLKPTPAPGsrre 449
Cdd:PHA03307   165 DAASSRQAAlPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR---------------RSSPISASASSPAPAPG---- 225

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  450 isssptsknRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGR 529
Cdd:PHA03307   226 ---------RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  530 SRSPQRPGwSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRG 609
Cdd:PHA03307   297 SPSPSSPG-SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAP 375
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
2151-2408 4.94e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 55.63  E-value: 4.94e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2151 PPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAI---PASVNLADSRTPAAAAAMNLA 2227
Cdd:PRK07003   360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAaaaAATRAEAPPAAPAPPATADRG 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2228 SPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVN 2307
Cdd:PRK07003   440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRE 519

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2308 --IAGSRTPAALAPTNLSSSRMAPALSGANLTSPRVPLSAYERVSGRTSPLLLDRARS-----RTPPSAPSQSRMTSERE 2380
Cdd:PRK07003   520 daPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPaaapaAAPKPAAPRVAVQVPTP 599

                          250       260
                   ....*....|....*....|....*...
gi 1958658111 2381 RAPSPASRMVQAPSQSLLPPAQDRPRSP 2408
Cdd:PRK07003   600 RARAATGDAPPNGAARAEQAAESRGAPP 627
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
2139-2355 7.04e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.33  E-value: 7.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2139 LALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRiPAASAAAMNLASARTSAIPASVNLADSRTP 2218
Cdd:PRK12323   361 LAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA-PAAAAAARAVAAAPARRSPAPEALAAARQA 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2219 AAAAAMNLASPRTAVAPSAVN-----LADPRTPAASAVNLAGARTPAALAALSltGSGTPP---TAGNYPSSSRTPQAPT 2290
Cdd:PRK12323   440 SARGPGGAPAPAPAPAAAPAAaarpaAAGPRPVAAAAAAAPARAAPAAAPAPA--DDDPPPweeLPPEFASPAPAQPDAA 517

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958658111 2291 PANLVgprsahgTAPVNIAGSRTPAALAPTNLSSSRMAPALSGANLTSPRVPLSAYERVSGRTSP 2355
Cdd:PRK12323   518 PAGWV-------AESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
2204-2428 1.40e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 1.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2204 SAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAL------SLTGSGTPPTAG 2277
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALaaarqaSARGPGGAPAPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2278 NYPSSSRTPQAPTP-ANLVGPRSAHGTAPVNIAGSRTPAALAPTNLSSSRMAPALSGANLTSPRVPLSAYERVSGRTSPL 2356
Cdd:PRK12323   452 PAPAAAPAAAARPAaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958658111 2357 LLDRARSRTPPSAPSQsrmtsererAPSPASRMVQAPSQSLLPPAQDRPRspVPSAFSDQSRSIAQTTPVAG 2428
Cdd:PRK12323   532 ADPDDAFETLAPAPAA---------APAPRAAAATEPVVAPRPPRASASG--LPDMFDGDWPALAARLPVRG 592
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 293-599 1.52e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.47  E-value: 1.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  293 GQSPPLASGHQGEVDAPSEPGATNIQQPSSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLvEQHG 372
Cdd:PHA03307   150 ASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAP-GRSA 228

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  373 DSPRPLAAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSSSESCPPSPQPTKLSRHASSSPESLKPTPAPGSRREISS 452
Cdd:PHA03307   229 ADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPA 308

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  453 SPTSKNRSHGRAKRDkSHSHTPSHRAGRSRSPATKRGRSRSRTPtkrghSRSRSPQWRRSRSAQRwgksRSPQRRGRSRS 532
Cdd:PHA03307   309 PSSPRASSSSSSSRE-SSSSSTSSSSESSRGAAVSPGPSPSRSP-----SPSRPPPPADPSSPRK----RPRPSRAPSSP 378

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958658111  533 PQRPGWSRSRNTqrrgrsrsarrgrshSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRSRTPARRR 599
Cdd:PHA03307   379 AASAGRPTRRRA---------------RAAVAGRARRRDATGRFpAGRPRPSPLDAGAASGAFYARYP 431
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 294-685 2.10e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.09  E-value: 2.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  294 QSPPLASGHQGEVDAPSEPGATNI------QQPSSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPll 367
Cdd:PHA03307    31 AADDLLSGSQGQLVSDSAELAAVTvvagaaACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTP-- 108

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  368 VEQHGDSPRPLAAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSSSESCPPSPQPTKLSRHAS----SSPESLKPTPA 443
Cdd:PHA03307   109 PGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAlplsSPEETARAPSS 188

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  444 PGSRREISSSPTSKNRSHGRAKRDKSHSHtPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRsrsaqrwGKSRS 523
Cdd:PHA03307   189 PPAEPPPSTPPAAASPRPPRRSSPISASA-SSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENEC-------PLPRP 260

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  524 PQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSR-------TPARRRSRSRTPA 596
Cdd:PHA03307   261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSsressssSTSSSSESSRGAA 340

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  597 RRRSRSRTPARRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSG 676
Cdd:PHA03307   341 VSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAG 420


                   ....*....
gi 1958658111  677 RSRSRTPAR 685
Cdd:PHA03307   421 AASGAFYAR 429
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 399-609 2.20e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 46.82  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  399 GCSPPKSPEKPPQSSSSESCPPSPQPTKLSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRA 478
Cdd:PRK12678    62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGA 141

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  479 GRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRS 558
Cdd:PRK12678   142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958658111  559 HSRSPATRGRSRSRTPARRGRSRSRTPARRR-----SRSRTPARRRSRSRTPARRG 609
Cdd:PRK12678   222 DGGDRRGRRRRRDRRDARGDDNREDRGDRDGddgegRGGRRGRRFRDRDRRGRRGG 277
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 480-600 4.77e-04

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 45.65  E-value: 4.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  480 RSRSPATKRGRSRSRTPTK-RGHSRSRSpqwrRSRSAQRWGKSRSPQRRGRSRSpqrpgwsRSRNTQRRGRSRSARRGRS 558
Cdd:TIGR01642    5 PDREREKSRGRDRDRSSERpRRRSRDRS----RFRDRHRRSRERSYREDSRPRD-------RRRYDSRSPRSLRYSSVRR 73

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1958658111  559 HSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRtpaRRRS 600
Cdd:TIGR01642   74 SRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDD---KKRS 112
PHA03328 PHA03328
nuclear egress lamina protein UL31; Provisional
 569-609 1.50e-03

nuclear egress lamina protein UL31; Provisional


Pssm-ID: 223046  Cd Length: 316  Bit Score: 43.55  E-value: 1.50e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1958658111  569 SRSRTPARRGRSRSRTPARRRSRSRtpARRRSRSRTPARRG 609
Cdd:PHA03328    14 RRSRRAARRSRRDGRVGSRGRSRYR--SRRRSSRRSSTRRA 52
RSRP pfam17069
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
 435-603 1.55e-03

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 43.23  E-value: 1.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  435 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 509
Cdd:pfam17069   10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  510 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 589
Cdd:pfam17069   90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160

                          170
                   ....*....|....
gi 1958658111  590 SRSRTPARRRSRSR 603
Cdd:pfam17069  161 SRSRTPFRLSEKER 174
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 510-607 1.62e-03

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 43.75  E-value: 1.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  510 RRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQRRGRSRSARRgrshsrspatRGRSRSRTPARRGRSRSRTPaRRR 589
Cdd:TIGR01622    2 YRDRERERLRDSSSAGDRDRRRDKGRER-SRDRSRDRERSRSRRRD----------RHRDRDYYRGRERRSRSRRP-NRR 69

                           90
                   ....*....|....*...
gi 1958658111  590 SRSRTPARRRSRSRTPAR 607
Cdd:TIGR01622   70 YRPREKRRRRGDSYRRRR 87
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2105-2477 1.89e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 1.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2105 LQQTGGSMMDGPGPRIPDHPRSSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRT-APAAN 2183
Cdd:PHA03307    21 FPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTlAPASP 100

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2184 LASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALA 2263
Cdd:PHA03307   101 AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPE 180

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2264 ALSLTGSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVNIAGSRTPAALAPTNLSSSRMAPALSGANLTSPRVPL 2343
Cdd:PHA03307   181 ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRP 260

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2344 SAYERVSGRTSPLLLDRARSRTPPSAPSqsrmTSERERAPSPasrmvqAPSQSLLPPAQDRPRSpVPSAFSDQSRSIAQT 2423
Cdd:PHA03307   261 APITLPTRIWEASGWNGPSSRPGPASSS----SSPRERSPSP------SPSSPGSGPAPSSPRA-SSSSSSSRESSSSST 329

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1958658111 2424 TPV-AGSQSLSSGTVAKSTSSASDHNGmlSGPAPGVSHAEGGEPHASTGAQQPSA 2477
Cdd:PHA03307   330 SSSsESSRGAAVSPGPSPSRSPSPSRP--PPPADPSSPRKRPRPSRAPSSPAASA 382
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
2108-2385 2.11e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 2.11e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2108 TGGSmmdGPGPRIPDHPRSSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASR 2187
Cdd:PRK07003   363 TGGG---APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2188 IPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSL 2267
Cdd:PRK07003   440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA-SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2268 TGSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVNiAGSRTPAalaptnlSSSRMAPALSGANLTSPRVPLSAYE 2347
Cdd:PRK07003   519 EDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRN-AGMRVSS-------DRGARAAAAAKPAAAPAAAPKPAAP 590

                          250       260       270
                   ....*....|....*....|....*....|....*...
gi 1958658111 2348 RVSGRTSPLLLDRARSRTPPSAPSQSRMTSERERAPSP 2385
Cdd:PRK07003   591 RVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
2268-2563 2.93e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.30  E-value: 2.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2268 TGSGTPPTAGNYPSSSRTPQAPTP--ANLVGPRSAHGTAPVNIAGSR-------TPAALAPTNLSSSRMAPALSGANLTS 2338
Cdd:PRK07003   362 VTGGGAPGGGVPARVAGAVPAPGAraAAAVGASAVPAVTAVTGAAGAalapkaaAAAAATRAEAPPAAPAPPATADRGDD 441

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2339 PRVPLSAYERvsgrtspllldRARSRTPPSAPSQsrmtsERERAPSPASRMVQAPSQSLLPPAQDRPRSPVPSAFSDQSR 2418
Cdd:PRK07003   442 AADGDAPVPA-----------KANARASADSRCD-----ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPA 505

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2419 SIAQTTPVAGSQSLSSGTVAKSTSSASdhngmlSGPAPgvshAEGGEPHASTGAQqpSALAVLQPAKERRSSSSSSSSSS 2498
Cdd:PRK07003   506 AVPDARAPAAASREDAPAAAAPPAPEA------RPPTP----AAAAPAARAGGAA--AALDVLRNAGMRVSSDRGARAAA 573

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958658111 2499 SSSSSSSSsssssssgssssdsegsslPAQPEVALKRVPSPTPVPKeAVREGRPQEPTPAKRKRR 2563
Cdd:PRK07003   574 AAKPAAAP-------------------AAAPKPAAPRVAVQVPTPR-ARAATGDAPPNGAARAEQ 618
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 2154-2558 3.19e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 3.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2154 SMSAAGLAARMSQVPAPVPLMSLRTAPAAnlasripaasaaamNLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAV 2233
Cdd:PRK07764   368 SDDERGLLARLERLERRLGVAGGAGAPAA--------------AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP 433

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2234 APSAvnlADPRTPAASAVNLAGARTPAALAALSLT----GSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVNIA 2309
Cdd:PRK07764   434 APAP---APAPPSPAGNAPAGGAPSPPPAAAPSAQpapaPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2310 GSRT--PAALAP-TNLSSSRMAPALSGANLTSPR---------VPLSAYERVSGRTSPLLLD------------RARSRT 2365
Cdd:PRK07764   511 TLRErwPEILAAvPKRSRKTWAILLPEATVLGVRgdtlvlgfsTGGLARRFASPGNAEVLVTalaeelggdwqvEAVVGP 590

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2366 PPSAPSQSRMTSERERAPSPASRMVQAPSQSLLPPAQDRPRSPVPSAfSDQSRSIAQTTPVAGSQSLSSGTVAKSTSSAS 2445
Cdd:PRK07764   591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPA-EASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2446 DHNGMLSGPAPGVSHAEGGEPHASTGAQQPSALAvlQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2525
Cdd:PRK07764   670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP--APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDD 747

                          410       420       430
                   ....*....|....*....|....*....|...
gi 1958658111 2526 PAQPEVALKRVPSPTPVPKEAVREGRPQEPTPA 2558
Cdd:PRK07764   748 PPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
PRK12678 PRK12678
transcription termination factor Rho; Provisional
 379-591 4.40e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 42.58  E-value: 4.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  379 AAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSSSESCPPSPQPTKLSRHASSSPESLKPTPAPGSRREiSSSPTSKN 458
Cdd:PRK12678    65 AAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE-AARRGAAR 143

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111  459 RSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWG-KSRSPQRRGRSRSPQRPG 537
Cdd:PRK12678   144 KAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDrRDRREQGDRREERGRRDG 223

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1958658111  538 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 591
Cdd:PRK12678   224 GDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGG 277
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
2246-2419 4.51e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 4.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2246 PAASAVNLAGARTPAALAALSLTGSGTPPTAgnyPSSSRTPQAPTPANLVGPRS-AHGTAPVNIAGSRTPAALAPTNLSS 2324
Cdd:PRK07003   375 RVAGAVPAPGARAAAAVGASAVPAVTAVTGA---AGAALAPKAAAAAAATRAEApPAAPAPPATADRGDDAADGDAPVPA 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2325 SRMAPALSGANLTSP-RVPLSAYERVSGRTSPLlldRARSRTPPSAPSQSRMTSERERAPSPASRMVQAPSQSLLPPAQD 2403
Cdd:PRK07003   452 KANARASADSRCDERdAQPPADSGSASAPASDA---PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528

                          170
                   ....*....|....*...
gi 1958658111 2404 RPRS--PVPSAFSDQSRS 2419
Cdd:PRK07003   529 APEArpPTPAAAAPAARA 546
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2229-2563 6.69e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 6.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2229 PRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAlslTGSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVNI 2308
Cdd:PHA03307    67 PPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAR---EGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGS 143

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2309 AGSRTPAALAPTNLSSSrmAPALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSERERAPSPASR 2388
Cdd:PHA03307   144 PGPPPAASPPAAGASPA--AVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPA 221

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2389 MVQAPSQsllppAQDRPRSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGVSHAEGGEPHA 2468
Cdd:PHA03307   222 PAPGRSA-----ADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2469 STGAQQPSALAVLQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPAQPEVALKRVPSPTPVPKEAVR 2548
Cdd:PHA03307   297 SPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPS 376

                          330
                   ....*....|....*
gi 1958658111 2549 EGRPQEPTPAKRKRR 2563
Cdd:PHA03307   377 SPAASAGRPTRRRAR 391
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
2134-2401 9.41e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.37  E-value: 9.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2134 QSRIALALTAISLGTARPPPSMSAAGlAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLA 2213
Cdd:PRK07003   413 KAAAAAAATRAEAPPAAPAPPATADR-GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFE 491

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2214 DSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPP-----TAGNYPSSSRTPQA 2288
Cdd:PRK07003   492 PAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAldvlrNAGMRVSSDRGARA 571

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658111 2289 -----PTPANLVGPRSAHGTAPVNIAGSRTPAALAPTNLSSSRMAPALSGANLTSP---------RVPLSAYERVSGRts 2354
Cdd:PRK07003   572 aaaakPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPpwedippddYVPLSADEGFGGP-- 649

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1958658111 2355 plllDRARSRTPPSAPSQSRMtsererAPSPASRMVQAPSQSLLPPA 2401
Cdd:PRK07003   650 ----DDGFVPVFDSGPDDVRV------APKPADAPAPPVDTRPLPPA 686
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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