NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958660622|ref|XP_038942654|]
View 

allergin-1 isoform X4 [Rattus norvegicus]

Protein Classification

immunoglobulin domain-containing protein( domain architecture ID 10620959)

immunoglobulin (Ig) domain-containing protein adopts a fold comprised of a sandwich of two beta sheets and may function in cell adhesion and/or pattern recognition

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ig_2 pfam13895
Immunoglobulin domain; This domain contains immunoglobulin-like domains.
 74-158 1.53e-04

Immunoglobulin domain; This domain contains immunoglobulin-like domains.


:

Pssm-ID: 464026 [Multi-domain]  Cd Length: 79  Bit Score: 39.30  E-value: 1.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660622  74 PNLNSSMSVVRMGQNVSLSCSSKNTSiDITYSLFLGKRYLESKRRRggavdFHLRISNANeSGPYKCKVNDSNSSKYSQN 153
Cdd:pfam13895   2 PVLTPSPTVVTEGEPVTLTCSAPGNP-PPSYTWYKDGSAISSSPNF-----FTLSVSAED-SGTYTCVARNGRGGKVSNP 74


                  ....*
gi 1958660622 154 FNFTI 158
Cdd:pfam13895  75 VELTV 79
 
Name Accession Description Interval E-value
Ig_2 pfam13895
Immunoglobulin domain; This domain contains immunoglobulin-like domains.
 74-158 1.53e-04

Immunoglobulin domain; This domain contains immunoglobulin-like domains.


Pssm-ID: 464026 [Multi-domain]  Cd Length: 79  Bit Score: 39.30  E-value: 1.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660622  74 PNLNSSMSVVRMGQNVSLSCSSKNTSiDITYSLFLGKRYLESKRRRggavdFHLRISNANeSGPYKCKVNDSNSSKYSQN 153
Cdd:pfam13895   2 PVLTPSPTVVTEGEPVTLTCSAPGNP-PPSYTWYKDGSAISSSPNF-----FTLSVSAED-SGTYTCVARNGRGGKVSNP 74


                  ....*
gi 1958660622 154 FNFTI 158
Cdd:pfam13895  75 VELTV 79
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 82-151 3.38e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 38.26  E-value: 3.38e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958660622   82 VVRMGQNVSLSCSSKNTSIDITYSLFLGKRYLESKRR---RGGAVDFHLRISNANE--SGPYKCKVNDSNSSKYS 151
Cdd:smart00410   5 TVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRfsvSRSGSTSTLTISNVTPedSGTYTCAATNSSGSASS 79
 
Name Accession Description Interval E-value
Ig_2 pfam13895
Immunoglobulin domain; This domain contains immunoglobulin-like domains.
 74-158 1.53e-04

Immunoglobulin domain; This domain contains immunoglobulin-like domains.


Pssm-ID: 464026 [Multi-domain]  Cd Length: 79  Bit Score: 39.30  E-value: 1.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958660622  74 PNLNSSMSVVRMGQNVSLSCSSKNTSiDITYSLFLGKRYLESKRRRggavdFHLRISNANeSGPYKCKVNDSNSSKYSQN 153
Cdd:pfam13895   2 PVLTPSPTVVTEGEPVTLTCSAPGNP-PPSYTWYKDGSAISSSPNF-----FTLSVSAED-SGTYTCVARNGRGGKVSNP 74


                  ....*
gi 1958660622 154 FNFTI 158
Cdd:pfam13895  75 VELTV 79
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 82-151 3.38e-04

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 38.26  E-value: 3.38e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958660622   82 VVRMGQNVSLSCSSKNTSIDITYSLFLGKRYLESKRR---RGGAVDFHLRISNANE--SGPYKCKVNDSNSSKYS 151
Cdd:smart00410   5 TVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRfsvSRSGSTSTLTISNVTPedSGTYTCAATNSSGSASS 79
ig pfam00047
Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of ...
 82-151 6.30e-03

Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions.


Pssm-ID: 395002  Cd Length: 86  Bit Score: 34.86  E-value: 6.30e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958660622  82 VVRMGQNVSLSCSSKNTSIDITYSLFLGKRYLESKRRRGGAVDFH----LRISNANE--SGPYKCKVNDSNSSKYS 151
Cdd:pfam00047   7 TVLEGDSATLTCSASTGSPGPDVTWSKEGGTLIESLKVKHDNGRTtqssLLISNVTKedAGTYTCVVNNPGGSATL 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH