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Conserved domains on  [gi|1958661791|ref|XP_038943064|]
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ubiquitin domain-containing protein 2 isoform X4 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UBD super family cl24880
Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin ...
 30-102 3.28e-40

Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin domain-containing proteins.


The actual alignment was detected with superfamily member pfam16455:

Pssm-ID: 465122  Cd Length: 101  Bit Score: 130.40  E-value: 3.28e-40
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958661791  30 QPLKKEKPkWKSDYPMTDGQLRSKRDEFWDTApaFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPH 102
Cdd:pfam16455   1 KPLRKPHP-WKSDRPWTRAQLDRERDEFFDTR--VTGRPEIWDALRAAAEVLEEGDLATAQAILDAAGITLPT 70
 
Name Accession Description Interval E-value
UBD pfam16455
Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin ...
 30-102 3.28e-40

Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin domain-containing proteins.


Pssm-ID: 465122  Cd Length: 101  Bit Score: 130.40  E-value: 3.28e-40
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958661791  30 QPLKKEKPkWKSDYPMTDGQLRSKRDEFWDTApaFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPH 102
Cdd:pfam16455   1 KPLRKPHP-WKSDRPWTRAQLDRERDEFFDTR--VTGRPEIWDALRAAAEVLEEGDLATAQAILDAAGITLPT 70
 
Name Accession Description Interval E-value
UBD pfam16455
Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin ...
 30-102 3.28e-40

Ubiquitin-binding domain; This ubiquitin-binding domain is found in ubiquitin domain-containing proteins.


Pssm-ID: 465122  Cd Length: 101  Bit Score: 130.40  E-value: 3.28e-40
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958661791  30 QPLKKEKPkWKSDYPMTDGQLRSKRDEFWDTApaFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPH 102
Cdd:pfam16455   1 KPLRKPHP-WKSDRPWTRAQLDRERDEFFDTR--VTGRPEIWDALRAAAEVLEEGDLATAQAILDAAGITLPT 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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