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Conserved domains on  [gi|1958670622|ref|XP_038946026|]
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zinc finger protein 11 isoform X2 [Rattus norvegicus]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11473154)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940|11179890|12665246|10940247
SCOP:  4003583

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
29-406 5.28e-14

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 74.35  E-value: 5.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622  29 RPYKCKECGKAFKRSRNLAQHQVTHKREKPHKCEECGRA--FTTLSVLTQHRVTHTGEKPY-QCKECGRAFKYNSTLTQH 105
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDksFSRPLELSRHLRTHHNNPSDlNSKSLPLSNSKASSSSLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 106 EVIHTEAKPYRCQECGKAFKRSHTLSQ--HQVTHKGEKPHK---------------------CEECGKAFSKHSSLTQHQ 162
Cdd:COG5048   112 SSSSNSNDNNLLSSHSLPPSSRDPQLPdlLSISNLRNNPLPgnnsssvntpqsnslhpplpaNSLSKDPSSNLSLLISSN 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 163 VIHTGEKPYQCRECGKAFKYQSTLTrHQIVHTGTKPYKCPECGKAFNNSSTLSRHQIIHTGEKPYKCQECGRAFYCSSFL 242
Cdd:COG5048   192 VSTSIPSSSENSPLSSSYSIPSSSS-DQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASS 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 243 IQHMKIHFEE-------MPYRCKECGKPFRLSSQLIRHQR--IHTGE--EPYICKE--CGKTFKYQSNLTRHQILHTGAK 309
Cdd:COG5048   271 QSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSIS 350

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 310 PYKCP--ECGKAFNNSSTLSRHQII--HTGEKPYKCQEC---------GRAFYCSSYLIQHMKihFEEIPYRCKECGKPF 376
Cdd:COG5048   351 PAKEKllNSSSKFSPLLNNEPPQSLqqYKDLKNDKKSETlsnscirnfKRDSNLSLHIITHLS--FRPYNCKNPPCSKSF 428

                         410       420       430
                  ....*....|....*....|....*....|
gi 1958670622 377 KCSSQLIRHQRIHSGEKPYICKECGKAFNC 406
Cdd:COG5048   429 NRHYNLIPHKKIHTNHAPLLCSILKSFRRD 458
PriA super family cl43353
Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, ...
 506-569 1.32e-03

Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG1198:

Pssm-ID: 440811 [Multi-domain]  Cd Length: 728  Bit Score: 41.64  E-value: 1.32e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958670622 506 PYV-CKECGKAF---NCSSYLTkhqrVHTGDRSYKCRECGkayyfssqltrhqrtHTREKPYRCKECG 569
Cdd:COG1198   431 PFLlCRDCGWVAkcpNCDVSLT----YHRSRRRLRCHYCG---------------YEEPVPKQCPECG 479
zf-H2C2_2 pfam13465
Zinc-finger double domain;
466-490 1.52e-03

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.20  E-value: 1.52e-03
                          10        20
                  ....*....|....*....|....*
gi 1958670622 466 LNRHQRIHTGEKPYVCQECGKAFNC 490
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
409-434 4.06e-03

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 4.06e-03
                          10        20
                  ....*....|....*....|....*.
gi 1958670622 409 YLTKHQRTHTGEKPYVCQECGKAFNC 434
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
29-406 5.28e-14

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 74.35  E-value: 5.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622  29 RPYKCKECGKAFKRSRNLAQHQVTHKREKPHKCEECGRA--FTTLSVLTQHRVTHTGEKPY-QCKECGRAFKYNSTLTQH 105
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDksFSRPLELSRHLRTHHNNPSDlNSKSLPLSNSKASSSSLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 106 EVIHTEAKPYRCQECGKAFKRSHTLSQ--HQVTHKGEKPHK---------------------CEECGKAFSKHSSLTQHQ 162
Cdd:COG5048   112 SSSSNSNDNNLLSSHSLPPSSRDPQLPdlLSISNLRNNPLPgnnsssvntpqsnslhpplpaNSLSKDPSSNLSLLISSN 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 163 VIHTGEKPYQCRECGKAFKYQSTLTrHQIVHTGTKPYKCPECGKAFNNSSTLSRHQIIHTGEKPYKCQECGRAFYCSSFL 242
Cdd:COG5048   192 VSTSIPSSSENSPLSSSYSIPSSSS-DQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASS 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 243 IQHMKIHFEE-------MPYRCKECGKPFRLSSQLIRHQR--IHTGE--EPYICKE--CGKTFKYQSNLTRHQILHTGAK 309
Cdd:COG5048   271 QSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSIS 350

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 310 PYKCP--ECGKAFNNSSTLSRHQII--HTGEKPYKCQEC---------GRAFYCSSYLIQHMKihFEEIPYRCKECGKPF 376
Cdd:COG5048   351 PAKEKllNSSSKFSPLLNNEPPQSLqqYKDLKNDKKSETlsnscirnfKRDSNLSLHIITHLS--FRPYNCKNPPCSKSF 428

                         410       420       430
                  ....*....|....*....|....*....|
gi 1958670622 377 KCSSQLIRHQRIHSGEKPYICKECGKAFNC 406
Cdd:COG5048   429 NRHYNLIPHKKIHTNHAPLLCSILKSFRRD 458
PriA COG1198
Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, ...
 506-569 1.32e-03

Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair];


Pssm-ID: 440811 [Multi-domain]  Cd Length: 728  Bit Score: 41.64  E-value: 1.32e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958670622 506 PYV-CKECGKAF---NCSSYLTkhqrVHTGDRSYKCRECGkayyfssqltrhqrtHTREKPYRCKECG 569
Cdd:COG1198   431 PFLlCRDCGWVAkcpNCDVSLT----YHRSRRRLRCHYCG---------------YEEPVPKQCPECG 479
zf-H2C2_2 pfam13465
Zinc-finger double domain;
466-490 1.52e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.20  E-value: 1.52e-03
                          10        20
                  ....*....|....*....|....*
gi 1958670622 466 LNRHQRIHTGEKPYVCQECGKAFNC 490
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
PRK05580 PRK05580
primosome assembly protein PriA; Validated
 506-569 3.49e-03

primosome assembly protein PriA; Validated


Pssm-ID: 235514 [Multi-domain]  Cd Length: 679  Bit Score: 40.53  E-value: 3.49e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958670622 506 PYV-CKECGKAF---NCSSYLTKHQRvhtgDRSYKCRECGkayyfssqltrhqrtHTREKPYRCKECG 569
Cdd:PRK05580  380 PFLlCRDCGWVAecpHCDASLTLHRF----QRRLRCHHCG---------------YQEPIPKACPECG 428
zf-H2C2_2 pfam13465
Zinc-finger double domain;
409-434 4.06e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 4.06e-03
                          10        20
                  ....*....|....*....|....*.
gi 1958670622 409 YLTKHQRTHTGEKPYVCQECGKAFNC 434
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
550-574 6.38e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.27  E-value: 6.38e-03
                          10        20
                  ....*....|....*....|....*
gi 1958670622 550 LTRHQRTHTREKPYRCKECGKAFIT 574
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
493-518 6.97e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.27  E-value: 6.97e-03
                          10        20
                  ....*....|....*....|....*.
gi 1958670622 493 YLQKHQRIHIVEKPYVCKECGKAFNC 518
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
29-406 5.28e-14

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 74.35  E-value: 5.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622  29 RPYKCKECGKAFKRSRNLAQHQVTHKREKPHKCEECGRA--FTTLSVLTQHRVTHTGEKPY-QCKECGRAFKYNSTLTQH 105
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDksFSRPLELSRHLRTHHNNPSDlNSKSLPLSNSKASSSSLS 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 106 EVIHTEAKPYRCQECGKAFKRSHTLSQ--HQVTHKGEKPHK---------------------CEECGKAFSKHSSLTQHQ 162
Cdd:COG5048   112 SSSSNSNDNNLLSSHSLPPSSRDPQLPdlLSISNLRNNPLPgnnsssvntpqsnslhpplpaNSLSKDPSSNLSLLISSN 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 163 VIHTGEKPYQCRECGKAFKYQSTLTrHQIVHTGTKPYKCPECGKAFNNSSTLSRHQIIHTGEKPYKCQECGRAFYCSSFL 242
Cdd:COG5048   192 VSTSIPSSSENSPLSSSYSIPSSSS-DQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASS 270

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 243 IQHMKIHFEE-------MPYRCKECGKPFRLSSQLIRHQR--IHTGE--EPYICKE--CGKTFKYQSNLTRHQILHTGAK 309
Cdd:COG5048   271 QSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSIS 350

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 310 PYKCP--ECGKAFNNSSTLSRHQII--HTGEKPYKCQEC---------GRAFYCSSYLIQHMKihFEEIPYRCKECGKPF 376
Cdd:COG5048   351 PAKEKllNSSSKFSPLLNNEPPQSLqqYKDLKNDKKSETlsnscirnfKRDSNLSLHIITHLS--FRPYNCKNPPCSKSF 428

                         410       420       430
                  ....*....|....*....|....*....|
gi 1958670622 377 KCSSQLIRHQRIHSGEKPYICKECGKAFNC 406
Cdd:COG5048   429 NRHYNLIPHKKIHTNHAPLLCSILKSFRRD 458
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
127-521 4.08e-11

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 65.49  E-value: 4.08e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 127 SHTLSQHQVTHKGE----KPHKCEECGKAFSKHSSLTQHQVIHTGEKPYQCR--ECGKAFKYQSTLTRHQIVHT------ 194
Cdd:COG5048    14 SVLSSTPKSTLKSLsnapRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSysGCDKSFSRPLELSRHLRTHHnnpsdl 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 195 -----GTKPYKCPEC---GKAFNNSSTL----------SRHQIIHTGEKPYKCQECgRAFYCSSFLIQHMKIHFEEMPYR 256
Cdd:COG5048    94 nskslPLSNSKASSSslsSSSSNSNDNNllsshslppsSRDPQLPDLLSISNLRNN-PLPGNNSSSVNTPQSNSLHPPLP 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 257 CKECGKPFRLSSQLIRHQRIHTGEEPYICKECGKTFKYQSNLTRHQILHTGAKPYKCPECGKAFNNSSTLSRHQIIHTGE 336
Cdd:COG5048   173 ANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSD 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 337 KPYKCQECGRAFYCSSYLIQHMKIHFEE-------IPYRCKECGKPFKCSSQLIRHQR--IHSGE--KPYICKE--CGKA 403
Cdd:COG5048   253 SSSSASESPRSSLPTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKL 332

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 404 FNCTSYLTKHQRTHTGEKPYVC--QECGKAFN-----------CSSYLSKHQRIHLGDRLYKCKECGKAYYFSSQLNRHQ 470
Cdd:COG5048   333 FSRNDALKRHILLHTSISPAKEklLNSSSKFSpllnneppqslQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHL 412

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958670622 471 RIHTGEKPyvCQECGKAFNCSSYLQKHQRIHIVEKPYVCKECGKAFNCSSY 521
Cdd:COG5048   413 SFRPYNCK--NPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDL 461
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
113-581 1.72e-10

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 63.56  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 113 KPYRCQECGKAFKRSHTLSQHQVTHKGEKPHKC--EECGKAFSKHSSLTQHQVIHTGEKPYqcRECGKAFKYQSTLTRHQ 190
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCsySGCDKSFSRPLELSRHLRTHHNNPSD--LNSKSLPLSNSKASSSS 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 191 IVHTGTKP-YKCPECGKAFNNSStlsRHQIIHTGEKPYKCQECgRAFYCSSFLIQHMKIHFEEMPYRCKECGKPFRLSSQ 269
Cdd:COG5048   110 LSSSSSNSnDNNLLSSHSLPPSS---RDPQLPDLLSISNLRNN-PLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLS 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 270 LIRHQRIHTGEEPYICKECGKTFKYQSNLTRHQILHTGAKPYKCPECGKAFNNSSTLSRHQIIHTGEKPYKCQECGRAFY 349
Cdd:COG5048   186 LLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSL 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 350 CSSYLIQHMKIHFEE-------IPYRCKECGKPFKCSSQLIRHQR--IHSGE--KPYICKECGkafnctsyltkhqrtht 418
Cdd:COG5048   266 PTASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYSL----------------- 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 419 gekpyvcqeCGKAFNCSSYLSKHQRIHLGDRLYKCKecgkayyfssqLNRHQRIHTGEKPYvcqecgkafNCSSYLQKHQ 498
Cdd:COG5048   329 ---------CGKLFSRNDALKRHILLHTSISPAKEK-----------LLNSSSKFSPLLNN---------EPPQSLQQYK 379

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 499 RIHiVEKPYVC--KECGKAFNCSSYLTKHQRVHTGDRS--YKCRECGKAYYFSSQLTRHQRTHTREKPYRCkECGKAFIT 574
Cdd:COG5048   380 DLK-NDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLC-SILKSFRR 457


                  ....*..
gi 1958670622 575 SSSLKRH 581
Cdd:COG5048   458 DLDLSNH 464
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
196-592 5.39e-09

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 58.55  E-value: 5.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 196 TKPYKCPECGKAFNNSSTLSRHQIIHTGEKPYKCQECGRAFYCS--SFLIQHMKIHFEEMPYRCKECGKP---FRLSSQL 270
Cdd:COG5048    31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSrpLELSRHLRTHHNNPSDLNSKSLPLsnsKASSSSL 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 271 IRHqrIHTGEEPYICKECGKTFKYQSNLTRHQILHTGAKPYKCPEC-GKAFNNSSTLSRHQIIHTGEKPYKCQECGRAFY 349
Cdd:COG5048   111 SSS--SSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNnSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLI 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 350 CSSyliqhmkIHFEEIPYRCKECGKPFKCSSQLIRHQRIHSGEKPYICKECGKAFNCTSYLTKHQRTHTGEKPYVCQECG 429
Cdd:COG5048   189 SSN-------VSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESP 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 430 KAFNC--SSYLSKHQRIHLGDR-----LYKCKECGKAYYFSSQLNRHQR--IHTGE--KPYVC--QECGKAFNCSSYLQK 496
Cdd:COG5048   262 RSSLPtaSSQSSSPNESDSSSEkgfslPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCpySLCGKLFSRNDALKR 341

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 497 HQRIHIVEKPYVCK-------------ECGKAFNCSSYLTKHQRVHTGDRSYKCRECGKAYYFSSQLTRHQRThtREKPY 563
Cdd:COG5048   342 HILLHTSISPAKEKllnssskfspllnNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSF--RPYNC 419

                         410       420
                  ....*....|....*....|....*....
gi 1958670622 564 RCKECGKAFITSSSLKRHQETHTLLKPSH 592
Cdd:COG5048   420 KNPPCSKSFNRHYNLIPHKKIHTNHAPLL 448
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 138-217 9.30e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 42.01  E-value: 9.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622 138 KGEKPHKCE--ECGKAFS-----KHSSLTQHQVIHTGEKPYQcrecgkafkyqstlTRHQIVHTGTKPYKCPECGKAFNN 210
Cdd:COG5189   345 KDGKPYKCPveGCNKKYKnqnglKYHMLHGHQNQKLHENPSP--------------EKMNIFSAKDKPYRCEVCDKRYKN 410


                  ....*..
gi 1958670622 211 SSTLSRH 217
Cdd:COG5189   411 LNGLKYH 417
PriA COG1198
Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, ...
 506-569 1.32e-03

Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair];


Pssm-ID: 440811 [Multi-domain]  Cd Length: 728  Bit Score: 41.64  E-value: 1.32e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958670622 506 PYV-CKECGKAF---NCSSYLTkhqrVHTGDRSYKCRECGkayyfssqltrhqrtHTREKPYRCKECG 569
Cdd:COG1198   431 PFLlCRDCGWVAkcpNCDVSLT----YHRSRRRLRCHYCG---------------YEEPVPKQCPECG 479
zf-H2C2_2 pfam13465
Zinc-finger double domain;
466-490 1.52e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 36.20  E-value: 1.52e-03
                          10        20
                  ....*....|....*....|....*
gi 1958670622 466 LNRHQRIHTGEKPYVCQECGKAFNC 490
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
PRK05580 PRK05580
primosome assembly protein PriA; Validated
 506-569 3.49e-03

primosome assembly protein PriA; Validated


Pssm-ID: 235514 [Multi-domain]  Cd Length: 679  Bit Score: 40.53  E-value: 3.49e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958670622 506 PYV-CKECGKAF---NCSSYLTKHQRvhtgDRSYKCRECGkayyfssqltrhqrtHTREKPYRCKECG 569
Cdd:PRK05580  380 PFLlCRDCGWVAecpHCDASLTLHRF----QRRLRCHHCG---------------YQEPIPKACPECG 428
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
7-129 3.67e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 40.06  E-value: 3.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622   7 DCGKAFKYRSVLYQHHISHTAARPYKCKECGKAFKRSRNL-------AQHQVTHKREKPHKCE--ECGRAFTTLSVLTQH 77
Cdd:COG5048   328 LCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLnneppqsLQQYKDLKNDKKSETLsnSCIRNFKRDSNLSLH 407

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958670622  78 RVTHTGEKPYQCK--ECGRAFKYNSTLTQHEVIHTEAKPYRCQECGKAFKRSHT 129
Cdd:COG5048   408 IITHLSFRPYNCKnpPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRDLDL 461
zf-H2C2_2 pfam13465
Zinc-finger double domain;
409-434 4.06e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 4.06e-03
                          10        20
                  ....*....|....*....|....*.
gi 1958670622 409 YLTKHQRTHTGEKPYVCQECGKAFNC 434
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 54-133 4.76e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 39.70  E-value: 4.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958670622  54 KREKPHKCE--ECGRAFTTLSVLTQHRVThtgekpyqcKECGRAFKYNSTLTQHEVIHTEAKPYRCQECGKAFKRSHTLS 131
Cdd:COG5189   345 KDGKPYKCPveGCNKKYKNQNGLKYHMLH---------GHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLK 415


                  ..
gi 1958670622 132 QH 133
Cdd:COG5189   416 YH 417
zf-H2C2_2 pfam13465
Zinc-finger double domain;
550-574 6.38e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.27  E-value: 6.38e-03
                          10        20
                  ....*....|....*....|....*
gi 1958670622 550 LTRHQRTHTREKPYRCKECGKAFIT 574
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
Mcm2 COG1241
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ...
 227-276 6.87e-03

DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];


Pssm-ID: 440854 [Multi-domain]  Cd Length: 682  Bit Score: 39.40  E-value: 6.87e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958670622 227 YKCQECGRAFYcssflIQHMKIHFEEmPYRCKECGK--PFRL---SSQLIRHQRI 276
Cdd:COG1241   129 FECPRCGTETY-----VPQTGEKLQE-PHECPGCGRqgPFKLlpeKSEFIDAQKI 177
zf-H2C2_2 pfam13465
Zinc-finger double domain;
493-518 6.97e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.27  E-value: 6.97e-03
                          10        20
                  ....*....|....*....|....*.
gi 1958670622 493 YLQKHQRIHIVEKPYVCKECGKAFNC 518
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
186-210 9.00e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 33.88  E-value: 9.00e-03
                          10        20
                  ....*....|....*....|....*
gi 1958670622 186 LTRHQIVHTGTKPYKCPECGKAFNN 210
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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