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Conserved domains on  [gi|1958650179|ref|XP_038948660|]
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potassium voltage-gated channel subfamily KQT member 1 isoform X6 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KCNQ_channel super family cl04130
KCNQ voltage-gated potassium channel; This family matches to the C-terminal tail of KCNQ type ...
 208-314 3.53e-25

KCNQ voltage-gated potassium channel; This family matches to the C-terminal tail of KCNQ type potassium channels.


The actual alignment was detected with superfamily member pfam03520:

Pssm-ID: 460954  Cd Length: 190  Bit Score: 100.60  E-value: 3.53e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958650179 208 RATIKVIRRMQYFVAKKKFQQARKPYDVRDVIEQYSQGHLNLMVRIKELQRRLDQSIGKPSlfIPISEKSKDRGSNTIGA 287
Cdd:pfam03520  72 KTVIRAVRIMKFLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQIVGRGP--PPTDKKKREKGPKVPAE 149

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958650179 288 -----------RLNRVEDKVTQLDQRLVIITDMLHQLL 314
Cdd:pfam03520 150 gdlvedlsmmgRVVKVEKQVQSIEKKLDFLLDIYSQCL 187
 
Name Accession Description Interval E-value
KCNQ_channel pfam03520
KCNQ voltage-gated potassium channel; This family matches to the C-terminal tail of KCNQ type ...
 208-314 3.53e-25

KCNQ voltage-gated potassium channel; This family matches to the C-terminal tail of KCNQ type potassium channels.


Pssm-ID: 460954  Cd Length: 190  Bit Score: 100.60  E-value: 3.53e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958650179 208 RATIKVIRRMQYFVAKKKFQQARKPYDVRDVIEQYSQGHLNLMVRIKELQRRLDQSIGKPSlfIPISEKSKDRGSNTIGA 287
Cdd:pfam03520  72 KTVIRAVRIMKFLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQIVGRGP--PPTDKKKREKGPKVPAE 149

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958650179 288 -----------RLNRVEDKVTQLDQRLVIITDMLHQLL 314
Cdd:pfam03520 150 gdlvedlsmmgRVVKVEKQVQSIEKKLDFLLDIYSQCL 187
 
Name Accession Description Interval E-value
KCNQ_channel pfam03520
KCNQ voltage-gated potassium channel; This family matches to the C-terminal tail of KCNQ type ...
 208-314 3.53e-25

KCNQ voltage-gated potassium channel; This family matches to the C-terminal tail of KCNQ type potassium channels.


Pssm-ID: 460954  Cd Length: 190  Bit Score: 100.60  E-value: 3.53e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958650179 208 RATIKVIRRMQYFVAKKKFQQARKPYDVRDVIEQYSQGHLNLMVRIKELQRRLDQSIGKPSlfIPISEKSKDRGSNTIGA 287
Cdd:pfam03520  72 KTVIRAVRIMKFLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQIVGRGP--PPTDKKKREKGPKVPAE 149

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958650179 288 -----------RLNRVEDKVTQLDQRLVIITDMLHQLL 314
Cdd:pfam03520 150 gdlvedlsmmgRVVKVEKQVQSIEKKLDFLLDIYSQCL 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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