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Conserved domains on  [gi|1958697996|ref|XP_038951262|]
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pre-mRNA-splicing factor 18 isoform X7 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SFM smart00500
Splicing Factor Motif, present in Prp18 and Pr04;
88-130 9.53e-14

Splicing Factor Motif, present in Prp18 and Pr04;


:

Pssm-ID: 128776  Cd Length: 44  Bit Score: 62.37  E-value: 9.53e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1958697996   88 LSRQEVIRRLRERGEPMRLFGETDYDAFQRLRKIEILTPEVNK 130
Cdd:smart00500   1 LPDSEVIRRLRELGEPITLFGEDDQERRQRLRQLLIVQDELDK 43
 
Name Accession Description Interval E-value
SFM smart00500
Splicing Factor Motif, present in Prp18 and Pr04;
88-130 9.53e-14

Splicing Factor Motif, present in Prp18 and Pr04;


Pssm-ID: 128776  Cd Length: 44  Bit Score: 62.37  E-value: 9.53e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1958697996   88 LSRQEVIRRLRERGEPMRLFGETDYDAFQRLRKIEILTPEVNK 130
Cdd:smart00500   1 LPDSEVIRRLRELGEPITLFGEDDQERRQRLRQLLIVQDELDK 43
PRP4 pfam08799
pre-mRNA processing factor 4 (PRP4) like; This small domain is found on PRP4 ribonuleoproteins. ...
 93-121 6.06e-09

pre-mRNA processing factor 4 (PRP4) like; This small domain is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing.


Pssm-ID: 462606 [Multi-domain]  Cd Length: 29  Bit Score: 49.22  E-value: 6.06e-09
                          10        20
                  ....*....|....*....|....*....
gi 1958697996  93 VIRRLRERGEPMRLFGETDYDAFQRLRKI 121
Cdd:pfam08799   1 VRRKLRELGEPITLFGETHADRRERLRKL 29
 
Name Accession Description Interval E-value
SFM smart00500
Splicing Factor Motif, present in Prp18 and Pr04;
88-130 9.53e-14

Splicing Factor Motif, present in Prp18 and Pr04;


Pssm-ID: 128776  Cd Length: 44  Bit Score: 62.37  E-value: 9.53e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 1958697996   88 LSRQEVIRRLRERGEPMRLFGETDYDAFQRLRKIEILTPEVNK 130
Cdd:smart00500   1 LPDSEVIRRLRELGEPITLFGEDDQERRQRLRQLLIVQDELDK 43
PRP4 pfam08799
pre-mRNA processing factor 4 (PRP4) like; This small domain is found on PRP4 ribonuleoproteins. ...
 93-121 6.06e-09

pre-mRNA processing factor 4 (PRP4) like; This small domain is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing.


Pssm-ID: 462606 [Multi-domain]  Cd Length: 29  Bit Score: 49.22  E-value: 6.06e-09
                          10        20
                  ....*....|....*....|....*....
gi 1958697996  93 VIRRLRERGEPMRLFGETDYDAFQRLRKI 121
Cdd:pfam08799   1 VRRKLRELGEPITLFGETHADRRERLRKL 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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