|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
2742-2820 |
1.06e-26 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 105.37 E-value: 1.06e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758595 2742 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKvtaSRPFTRFRTAVRVVIAVLRLRFLVKKW 2820
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
462-1422 |
6.53e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 6.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 462 LDLQLEQPKAQGSLIEDYQEkLSNAEEKIE--LMKQEFQKKEAEWELSREDLKRDAEEKLAsmfLELREKAESEKLSIIN 539
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKE-LKAELRELElaLLVLRLEELREELEELQEELKEAEEELEE---LTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 540 -RFELRESSMRHLQD---QQAAQISDLERSLREQQGHLRQLEQELTRDEvllcsqcgkepsvAQDEKsailLREKEDCAL 615
Cdd:TIGR02168 274 lEVSELEEEIEELQKelyALANEISRLEQQKQILRERLANLERQLEELE-------------AQLEE----LESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 616 QLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKhhsELTEQLASLESKQQALl 695
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA---SLNNEIERLEARLERL- 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 696 ethvAKMQVKHDAEISALEKrhlsnldELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQELEKLKLK 775
Cdd:TIGR02168 413 ----EDRRERLQQEIEELLK-------KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 776 HAEELQSVRNSLRVKMSAQHTESGKGPAADLQGAHQKAPAMALHNEGHQLEEDGDAALGGADTEDLQHhaepreregpht 855
Cdd:TIGR02168 482 RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQA------------ 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 856 VEMQTSQTELakpqELQASQDQGAQVRDQVFLLSReleeCRGELEQLQQRRERENQEGATLICMLRADVDlaqsegKALR 935
Cdd:TIGR02168 550 VVVENLNAAK----KAIAFLKQNELGRVTFLPLDS----IKGTEIQGNDREILKNIEGFLGVAKDLVKFD------PKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 936 DALRRLLD--LFGETLKAAVTLKSRISERAGLLLdhedavdtsgaqlaaaalgemwpdeglLDIDRTLPEGAETSSVCEI 1013
Cdd:TIGR02168 616 KALSYLLGgvLVVDDLDNALELAKKLRPGYRIVT---------------------------LDGDLVRPGGVITGGSAKT 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1014 SShvcesffmspeNTQECEQPIRKvyqsLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLE 1093
Cdd:TIGR02168 669 NS-----------SILERRREIEE----LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1094 RLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEE----NSVLW 1169
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAldelRAELT 813
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1170 NQKETFTNeAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSqmrvLESELEDQLVQhrgCAQLAEEVTTLKQQLATL 1249
Cdd:TIGR02168 814 LLNEEAAN-LRERLESLERRIAATERRLEDLEEQIEELSEDIES----LAAEIEELEEL---IEELESELEALLNERASL 885
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1250 DKHLRSQRQFMDEqaaerehereeFQQEIKWLEGQLRQATRPRppGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIkk 1329
Cdd:TIGR02168 886 EEALALLRSELEE-----------LSEELRELESKRSELRREL--EELREKLAQLELRLEGLEVRIDNLQERLSEEYS-- 950
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1330 dladqqllIQEEEIKHLEETNENiqrQMAQLQEELEKQRRSTEELEVVNSRN-SEIEELKAIIEHLQENQEQLQKAKaee 1408
Cdd:TIGR02168 951 --------LTLEEAEALENKIED---DEEEARRRLKRLENKIKELGPVNLAAiEEYEELKERYDFLTAQKEDLTEAK--- 1016
|
970
....*....|....
gi 1958758595 1409 iEQLHEVIEKLQSE 1422
Cdd:TIGR02168 1017 -ETLEEAIEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
120-587 |
5.50e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 5.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEmaLRNEQE 199
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 200 TAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAkhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA--AAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 280 LKNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLEsMKTNREEQ 359
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEE--AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE-AEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 360 NGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKtyqedLTVFQQRLQEAREESLESAE 439
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA-----AIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 440 ISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDlkRDAEEKL 519
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAG 659
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758595 520 ASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLL 587
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1079-1419 |
6.24e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 6.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1079 EEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQlivELEDLRKQLQQASREL 1158
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE---RLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1159 LTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQS----EKDRATLLSQMRVLESELEDQlvqHRGCAQ 1234
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElsklEEEVSRIEARLREIEQKLNRL---TLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1235 LAEEVTTLKQQLATLDkhlrSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQEK 1314
Cdd:TIGR02169 831 LEKEIQELQEQRIDLK----EQIKSIEKEIENLNGKKEELEEELEELEAALRDL---------ESRLGDLKKERDELEAQ 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1315 LREKLDGFNELVIKKDLADQQLL-------IQEEEIKHLEETNENIQRQMA------QLQEELEKQRRSTEELEVVNsrN 1381
Cdd:TIGR02169 898 LRELERKIEELEAQIEKKRKRLSelkakleALEEELSEIEDPKGEDEEIPEeelsleDVQAELQRVEEEIRALEPVN--M 975
|
330 340 350
....*....|....*....|....*....|....*...
gi 1958758595 1382 SEIEELKAIIEHLQENQEQLQKAKAEEiEQLHEVIEKL 1419
Cdd:TIGR02169 976 LAIQEYEEVLKRLDELKEKRAKLEEER-KAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
144-716 |
1.87e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 1.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 144 LQKEKETAL--TELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMAlRNEQETAELKEKFRSEMEKTVQMMETL 221
Cdd:COG1196 205 LERQAEKAEryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELE-ELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 222 KQDWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSE 301
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 302 HCQYLQDLELRFREKEKAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRS 381
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEA--LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 382 DFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEPPDP 461
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 462 LDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEKLASMFLELREKAESEKLSIINRF 541
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 542 ELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEpsVAQDEKSAILLREKEDCALQLLTAQ 621
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE--GGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 622 NRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAK 701
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
570
....*....|....*.
gi 1958758595 702 MQV-KHDAEISALEKR 716
Cdd:COG1196 760 PDLeELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1120-1423 |
5.25e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 5.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1120 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEEnsvlWNQKETFTNEAKEREAALQKEVESLTRDQWE 1199
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE----LEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1200 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIK 1279
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1280 WLEGQLRQATRprppgpRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQ 1359
Cdd:TIGR02168 832 RIAATERRLED------LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958758595 1360 LQEELEKQRRSTEEL-EVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1423
Cdd:TIGR02168 906 LESKRSELRRELEELrEKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
154-779 |
3.57e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 3.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 154 ELREMLNGRRAQELALLQSRQQCElELMREQHAREKEEMalRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCL 233
Cdd:PTZ00121 1138 DARKAEEARKAEDAKRVEIARKAE-DARKAEEARKAEDA--KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA 1214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAI-----RKLQEDLRSEHCQYLQD 308
Cdd:PTZ00121 1215 EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIkaeeaRKADELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 309 LElRFREKEKAKELELETLQASYEDLKAQSQEEIRhlwSQLESMKTNREEQNGSWEPLLAQAShleelqhlrsdfAQQQQ 388
Cdd:PTZ00121 1295 AK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK---KKADAAKKKAEEAKKAAEAAKAEAE------------AAADE 1358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 389 QERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSScmfpeetsgRERKEPPDPLDLQLEQ 468
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA---------AAAKKKADEAKKKAEE 1429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 469 PKAQGSLIEDYQEKLSNAEEKI---ELMKQEFQKKEAEWELSREDLKRDAEEKLASMflELREKAES--EKLSIINRFEL 543
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEakKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 544 RESSMRHLQDQQAAQISDLERSLREQQG--HLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSAillREKEDCALQLLTAQ 621
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK---KAEEDKNMALRKAE 1584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 622 NRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSElTEQLASLESKQQALLETHVAK 701
Cdd:PTZ00121 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE-AEEKKKAEELKKAEEENKIKA 1663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 702 MQVKHDAEISALEKRHLSNLDElESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHR--EILTQELEKLKLKHAEE 779
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEE-DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKaeEENKIKAEEAKKEAEED 1742
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1058-1689 |
9.30e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 9.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1058 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1137
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1138 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKEtftnEAKEREAALQKEVESLTRDQWE-SRKQSEKDRATLLSQMR 1216
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARLERLEDRRERLQQEIEElLKKLEEAELKELQAELE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1217 VLESELEDQLVQHRGC-----------AQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEF--QQEIKWLEG 1283
Cdd:TIGR02168 444 ELEEELEELQEELERLeealeelreelEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknQSGLSGILG 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1284 QLRQATRPRP----------PGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETN--- 1350
Cdd:TIGR02168 524 VLSELISVDEgyeaaieaalGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFlgv 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1351 -------------------------ENIQRQMAQLQEELEKQRRSTEELEVVN-----------------SRNSEIEELK 1388
Cdd:TIGR02168 604 akdlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRpggvitggsaktnssilERRREIEELE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1389 AIIEHLQENQEQLQKA---KAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTELSCL----QAEGMGGQALHNE 1461
Cdd:TIGR02168 684 EKIEELEEKIAELEKAlaeLRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEeriaQLSKELTELEAEI 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1462 LQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQR 1541
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1542 DLEIDAVNK--WKVSHSVELEALLLALAHFQHAVEQQTSATPDEPPK-----LQQLLVQCARLSHQLHVLYRRFLRCQVE 1614
Cdd:TIGR02168 844 EEQIEELSEdiESLAAEIEELEELIEELESELEALLNERASLEEALAllrseLEELSEELRELESKRSELRRELEELREK 923
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958758595 1615 LGQHQPRVasvgcadppAEAQGKRDGELEQdgvssglALAPHSLVAQAKEEQPEDCHLGNTSLRAQLRQLEEKLD 1689
Cdd:TIGR02168 924 LAQLELRL---------EGLEVRIDNLQER-------LSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1058-1545 |
9.75e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 9.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1058 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1137
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1138 QQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRV 1217
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE-EELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1218 LESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgpr 1297
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE------- 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1298 dsQCAKLDEEVELLQEKLREKLDgfNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQ---EELEKQRRSTEEL 1374
Cdd:COG1196 471 --EAALLEAALAELLEELAEAAA--RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1375 EVVNSRNSEIEELKAIIEHLQENQ---------EQLQKAKAEEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTEL 1445
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1446 SCLQAEGMGGQAL------HNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEA 1519
Cdd:COG1196 627 LVAARLEAALRRAvtlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500
....*....|....*....|....*.
gi 1958758595 1520 MASRIQEFEATLKAKEAIIVQRDLEI 1545
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEA 732
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1040-1552 |
1.20e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1040 QSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGF 1119
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1120 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwE 1199
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE-E 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1200 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIK 1279
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1280 WLEGQLRQATRPR--PPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQM 1357
Cdd:COG1196 502 DYEGFLEGVKAALllAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1358 AQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQ--EQLQKAKAEEIEQLHEVIEKLQSELSLmgptvhEMSD 1435
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLlgRTLVAARLEAALRRAVTLAGRLREVTL------EGEG 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1436 LPPGSLHTElscLQAEGMGGQALHNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAARHLTELEhcvALRQA 1515
Cdd:COG1196 656 GSAGGSLTG---GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQ 729
|
490 500 510
....*....|....*....|....*....|....*..
gi 1958758595 1516 EVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNKWK 1552
Cdd:COG1196 730 LEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-648 |
2.38e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 135 AQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNEQ---ETAELKEKF---- 207
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkKADAAKKKAeeak 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 208 ------RSEMEKTVQMMETLKQDWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQK----------AELEKIFQ 271
Cdd:PTZ00121 1343 kaaeaaKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKkkadelkkaaAAKKKADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 272 AKHEAEVSLKNLEAQHQAAIRKLQEDLR--SEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQL 349
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 350 ---ESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQR 426
Cdd:PTZ00121 1503 kkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 427 LQEAREESLESAEISSSCMFPEETSGRERKEPPDPLDLQLEQ-PKAQGSLIEDYQEKLSNAEEKIElmKQEFQKKEAEWE 505
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENK 1660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 506 LSREDLKR-DAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDE 584
Cdd:PTZ00121 1661 IKAAEEAKkAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758595 585 VLlcSQCGKEPSVAQDEKSAI--LLREKEDCALQLLTAQNRFLEER-KEIMEKFAKEQDAFLLDTQE 648
Cdd:PTZ00121 1741 ED--KKKAEEAKKDEEEKKKIahLKKEEEKKAEEIRKEKEAVIEEElDEEDEKRRMEVDKKIKDIFD 1805
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1146-1494 |
2.56e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1146 DLRKQLQQASRELLTLKeensvlWNQKETFTNEAKEREAALQKEVESLTRDQwesrKQSEKDRATLLSQMRVLESELEDQ 1225
Cdd:TIGR02168 217 ELKAELRELELALLVLR------LEELREELEELQEELKEAEEELEELTAEL----QELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1226 lvQHRgCAQLAEEVTTLKQQLATLD---KHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATrprppGPRDSQCA 1302
Cdd:TIGR02168 287 --QKE-LYALANEISRLEQQKQILRerlANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK-----EELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1303 KLDEEVELLQE---KLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS 1379
Cdd:TIGR02168 359 ELEELEAELEElesRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1380 RnSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSELSlmgptvhEMSDLppGSLHTELSCLQAEGMG-GQAL 1458
Cdd:TIGR02168 439 Q-AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER-------ELAQL--QARLDSLERLQENLEGfSEGV 508
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958758595 1459 HNELQAAQAAKGAFGQLL----ADHGHSQALE-ALQERLQD 1494
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSelisVDEGYEAAIEaALGGRLQA 549
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
869-1428 |
2.90e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 2.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 869 QELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGET 948
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 949 LKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEgaetssvceisshvcesffmspent 1028
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE------------------------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1029 qeceqpIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALE 1108
Cdd:COG1196 370 ------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1109 LHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQK 1188
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1189 EVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTL------KQQLATLDKHLRSQRQFMDE 1262
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkirARAALAAALARGAIGAAVDL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1263 QAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEE 1342
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1343 IKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEE------------IE 1410
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEeealeelpeppdLE 763
|
570
....*....|....*...
gi 1958758595 1411 QLHEVIEKLQSELSLMGP 1428
Cdd:COG1196 764 ELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2072-2585 |
1.61e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2072 YNSLVKKLEKVIQEQGDLQKVREHAclpdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQV 2151
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEEL-----EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2152 ELLAY---KVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRYGH 2228
Cdd:COG1196 309 ERRREleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2229 VTwSYSGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ 2308
Cdd:COG1196 389 LE-ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2309 LCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSR---------SLELSEALQHERLLTEQLSRN 2379
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavAVLIGVEAAYEAALEAALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2380 AQEACARQDTQAQHA--LLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKE-------------- 2443
Cdd:COG1196 548 LQNIVVEDDEVAAAAieYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAryyvlgdtllgrtl 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2444 VSGNLRSAVDALQTHKQELGCCL-------EREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRV 2516
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTlegeggsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758595 2517 KEKLRELELQRQRDEHKIEQLQRLVRELRWKEEAPGGNGPCRGSPCLGSLERDQFQEQQQELEKIRQQL 2585
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1086-1424 |
4.09e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 4.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1086 QKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIV-ELEDLRKQLQQASRELLTLKEE 1164
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLkEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1165 nsvlwnqKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVTTLKQ 1244
Cdd:TIGR02169 253 -------LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA----------SLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1245 QLatldkhlrsqrQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRppgprdsqcAKLDEEVELLQEKLREKLDGFNE 1324
Cdd:TIGR02169 316 EL-----------EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR---------DKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1325 LVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEEL------------EVVNSRNSEIEELKAIIE 1392
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLnaaiagieakinELEEEKEDKALEIKKQEW 455
|
330 340 350
....*....|....*....|....*....|..
gi 1958758595 1393 HLQENQEQLQKAKaEEIEQLHEVIEKLQSELS 1424
Cdd:TIGR02169 456 KLEQLAADLSKYE-QELYDLKEEYDRVEKELS 486
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
147-781 |
9.26e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 9.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 147 EKETALTELREMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMMETLKQDWE 226
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 227 SERELCL---ETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEkifQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSEhc 303
Cdd:PTZ00121 1289 KKKADEAkkaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD---AAKKKAEEAKKAAEAAKAEAEAAADEAEAAE-- 1363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 304 qylqdlelrfrEKEKAKELELETLQASYEDLKAQSQEEirhlwSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDF 383
Cdd:PTZ00121 1364 -----------EKAEAAEKKKEEAKKKADAAKKKAEEK-----KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKA 1427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 384 AQQQQQERAQHESELehlrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEISsscmfpEETSGRERKEPPDPLD 463
Cdd:PTZ00121 1428 EEKKKADEAKKKAEE-------AKKADEAKKKAEE-----AKKAEEAKKKAEEAKKAD------EAKKKAEEAKKADEAK 1489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 464 LQLEQPKAQGSLIEDYQEKLSNAEE--KIELMKQEFQKKEAEWELSREDLKRDAEEKLASmflELREKAESEKLSIINRF 541
Cdd:PTZ00121 1490 KKAEEAKKKADEAKKAAEAKKKADEakKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD---ELKKAEELKKAEEKKKA 1566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 542 E--LRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVllcsqcgkepSVAQDEK-SAILLREKEDCALQLL 618
Cdd:PTZ00121 1567 EeaKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA----------KKAEEAKiKAEELKKAEEEKKKVE 1636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 619 TAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETH 698
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 699 VAKmQVKHDAEISALEKRHLSNLDElESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQELEKLKLKHAE 778
Cdd:PTZ00121 1717 KAE-ELKKAEEENKIKAEEAKKEAE-EDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
...
gi 1958758595 779 ELQ 781
Cdd:PTZ00121 1795 EVD 1797
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
869-1419 |
9.49e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 9.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 869 QELQASQDQGAQVRDQVFLLSRELEECRGELEQLQQRRERENQEGATL---ICMLRADVDLAQSEGKALRDALRRLLDLF 945
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELeeeLAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 946 GETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAETSSVCEisshvcesffmsp 1025
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE------------- 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1026 ENTQECEQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRL 1105
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1106 ALELHTAEGLLEGFKVEKA-----DLQEALGKKEESEQQLIVEL-----EDLRKQLQQASRELLTLKEENSvlwnQKETF 1175
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLrglagAVAVLIGVEAAYEAALEAALaaalqNIVVEDDEVAAAAIEYLKAAKA----GRATF 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1176 TNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHR-GCAQLAEEVTTLKQQLATLDKHLR 1254
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARlEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1255 SQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQ 1334
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1335 QLLIQEEEIKHLEETNENIQRQM---AQLQEELEKQRRSTEELEVVNSRnsEIEELKAIIEHLQENQEQLQKAKaEEIEQ 1411
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPpdlEELERELERLEREIEALGPVNLL--AIEEYEELEERYDFLSEQREDLE-EARET 813
|
....*...
gi 1958758595 1412 LHEVIEKL 1419
Cdd:COG1196 814 LEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2148-2502 |
1.70e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2148 RRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLRyg 2227
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE-- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2228 hvtwsysgtssasAGRAVLDGKENELKVVLEELECERgkgqVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNN 2307
Cdd:COG1196 302 -------------QDIARLEERRRELEERLEELEEEL----AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2308 QLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQhERLLTEQLSRNAQEACARQ 2387
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2388 DTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRR---EKEVSGNLRSAVDALQTHKQELGC 2464
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLleaEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350
....*....|....*....|....*....|....*....
gi 1958758595 2465 -CLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRR 2502
Cdd:COG1196 524 gAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2298-2550 |
1.82e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2298 SLEKQLAQNNQLCVALKHERaakdnlqKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEAL----QHERLLT 2373
Cdd:TIGR02168 236 ELREELEELQEELKEAEEEL-------EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrleQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2374 EQLSRNAQEACARQDTQAQhaLLRKLKAEKARALELEAMLEKVQKQAAHTQQqleaqaqerclELRREKEVSGNLRSAVD 2453
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEE--LESKLDELAEELAELEEKLEELKEELESLEA-----------ELEELEAELEELESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2454 ALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL----RELELQRQR 2529
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeeleEELEELQEE 455
|
250 260
....*....|....*....|.
gi 1958758595 2530 DEHKIEQLQRLVRELRWKEEA 2550
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQA 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
136-543 |
2.05e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 136 QLELTQANLQKeKETALTELREMLNGRRAQELALLQSRqqcelELMREQHAREKEEMALRNEQETAELkEKFRSEMEKTV 215
Cdd:TIGR02168 180 KLERTRENLDR-LEDILNELERQLKSLERQAEKAERYK-----ELKAELRELELALLVLRLEELREEL-EELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 216 QMMETLkQDWESERELCLETLRKElsakhQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQ 295
Cdd:TIGR02168 253 EELEEL-TAELQELEEKLEELRLE-----VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 296 EDLRSEHCQylqdlelrfREKEKAKELELETLQASYEDLKAQSQEEIRhlwsQLESMKTNREEQNgswepllaqashlEE 375
Cdd:TIGR02168 327 ELESKLDEL---------AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELE-------------EQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 376 LQHLRSDFAqQQQQERAQHESELEHLrvyfEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgrer 455
Cdd:TIGR02168 381 LETLRSKVA-QLELQIASLNNEIERL----EARLERLEDRRER-----LQQEIEELLKKLEEAEL--------------- 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 456 keppDPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEK--LASMFLELREKAESE 533
Cdd:TIGR02168 436 ----KELQAELEELEEE---LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdsLERLQENLEGFSEGV 508
|
410
....*....|
gi 1958758595 534 KLSIINRFEL 543
Cdd:TIGR02168 509 KALLKNQSGL 518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
208-916 |
2.14e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 208 RSEMEKTVQMMETLKqdwESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQH 287
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLK---PSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARK 1135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 288 QAAIRKLQEDLRSEHCQYLQDLelrfREKEKAKELELetlqasyedlkAQSQEEIRHLWSQLESMKTNREEQngsweplL 367
Cdd:PTZ00121 1136 AEDARKAEEARKAEDAKRVEIA----RKAEDARKAEE-----------ARKAEDAKKAEAARKAEEVRKAEE-------L 1193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 368 AQASHLEELQHLRsdfaqqqqqeRAQHESELEHLRVYFEKKLNDAEKTYQEdltvFQQRLQEAREESLESAEISSSCMFP 447
Cdd:PTZ00121 1194 RKAEDARKAEAAR----------KAEEERKAEEARKAEDAKKAEAVKKAEE----AKKDAEEAKKAEEERNNEEIRKFEE 1259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 448 EETSGRERKEPPDPLDlqlEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEE--KLASmflE 525
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAE---EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakKKAD---A 1333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 526 LREKAE-SEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLLCSQCGKEPSVAQDEKSA 604
Cdd:PTZ00121 1334 AKKKAEeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 605 ILLREKEDcALQLLTAQNRFLEERKEIMEKfAKEQDAFLLDTQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQL 684
Cdd:PTZ00121 1414 AAAKKKAD-EAKKKAEEKKKADEAKKKAEE-AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 685 ASlESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREI 764
Cdd:PTZ00121 1492 AE-EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK 1570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 765 LTQELEKLKLKHAEELQSVRNSLRVKMSAQHTESGKGPAADLQGAHQ-KAPAMALHNEghQLEEDGDAALGGADTEDLQH 843
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEaKIKAEELKKA--EEEKKKVEQLKKKEAEEKKK 1648
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758595 844 HAEPREREGPHTV----EMQTSQTELAKPQELQASQDQGAQVRDQvflLSRELEECRgELEQLQQRRERENQEGATL 916
Cdd:PTZ00121 1649 AEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEA---LKKEAEEAK-KAEELKKKEAEEKKKAEEL 1721
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1058-1423 |
2.49e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.61 E-value: 2.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1058 KQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESE 1137
Cdd:PRK03918 186 KRTENIEELIKEKEKEL----EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1138 QQL---IVELEDLRKQLQQASRELLTLKEEnSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEK--DRATLL 1212
Cdd:PRK03918 262 RELeerIEELKKEIEELEEKVKELKELKEK-AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1213 SQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLrsqrqfmdeqaaeREHEREEFQQEIKWLEgqlrqatrpr 1292
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL-------------TGLTPEKLEKELEELE---------- 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1293 ppgprdsqcaKLDEEVELLQEKLREKLDGFNELVIKKDLADQQL------------LIQEEEIKHLEETN----ENIQRQ 1356
Cdd:PRK03918 398 ----------KAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrELTEEHRKELLEEYtaelKRIEKE 467
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758595 1357 MAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1423
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
273-1164 |
3.29e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 273 KHEAEvslKNLEAQHQAAIRklQEDLRSEHCQYLQDLElrfREKEKAKEleletlqasYEDLKaqsqEEIRHLwsQLESM 352
Cdd:TIGR02168 174 RKETE---RKLERTRENLDR--LEDILNELERQLKSLE---RQAEKAER---------YKELK----AELREL--ELALL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 353 KTNREEQNGSWEPLLAQashLEELQHLRSDFAQQQQQERAQHEsELEHLRVYFEKKLNDAEKTYQE------DLTVFQQR 426
Cdd:TIGR02168 231 VLRLEELREELEELQEE---LKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYAlaneisRLEQQKQI 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 427 LQEAREESLESAEissscmfpeetsgrerkeppdPLDLQLEQPKAQgslIEDYQEKLSNAEEKIELMKQEFQKKEAEWEl 506
Cdd:TIGR02168 307 LRERLANLERQLE---------------------ELEAQLEELESK---LDELAEELAELEEKLEELKEELESLEAELE- 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 507 SREDLKRDAEEKLAsmflELREKAESEKLsiiNRFELRESsmrhlQDQQAAQISDLERSLREQQGHLRQLEQELtrdevl 586
Cdd:TIGR02168 362 ELEAELEELESRLE----ELEEQLETLRS---KVAQLELQ-----IASLNNEIERLEARLERLEDRRERLQQEI------ 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 587 lcSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKHSHELQLLQQGHQQQll 666
Cdd:TIGR02168 424 --EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE-- 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 667 alrmeletkHHSELTEQLASLESKQQALLETH-VAKMQVKHDAEIS-----ALEKRHLSNLDELESCYVADIQTIRdEHK 740
Cdd:TIGR02168 500 ---------NLEGFSEGVKALLKNQSGLSGILgVLSELISVDEGYEaaieaALGGRLQAVVVENLNAAKKAIAFLK-QNE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 741 KALELLRAELEEQLQKKDSCHREILTQELEKLKLkhAEELQSVRNSLRVKMSAqhTESGKGPAADLQGAHQKAPAMALHN 820
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV--AKDLVKFDPKLRKALSY--LLGGVLVVDDLDNALELAKKLRPGY 645
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 821 -----EGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKpQELQASQDQGAQVRDQVFLLSRELEEC 895
Cdd:TIGR02168 646 rivtlDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELE-KALAELRKELEELEEELEQLRKELEEL 724
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 896 RGELEQLQQRRERENQEGATLicmlRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDT 975
Cdd:TIGR02168 725 SRQISALRKDLARLEAEVEQL----EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 976 SGAQLAAAALgemwpdegllDIDRTLPEGAETSSVCEISSHVCESFFMSPENTQECEQPIRKVYQSLSTAVEGLLDMALD 1055
Cdd:TIGR02168 801 LREALDELRA----------ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1056 SSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEE 1135
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
890 900 910
....*....|....*....|....*....|
gi 1958758595 1136 SEQQLIVELEDLR-KQLQQASRELLTLKEE 1164
Cdd:TIGR02168 951 LTLEEAEALENKIeDDEEEARRRLKRLENK 980
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-471 |
5.78e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 5.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 138 ELTQANLQKEKEtaltELREMLNGRRAQELALLQSRQQCELELMREQHAREKEE--MALRNEQETAELKEKFRSEMEKTV 215
Cdd:PTZ00121 1526 EAKKAEEAKKAD----EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknMALRKAEEAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 216 QMMETLKQDW---ESERELCLETLRKELSAKHQSEmeglqnQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIR 292
Cdd:PTZ00121 1602 EEEKKMKAEEakkAEEAKIKAEELKKAEEEKKKVE------QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 293 KLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASyEDLKAQS---QEEIRHLwsQLESMKTNREEQNGSWEPLLAQ 369
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE-EKKKAEElkkAEEENKI--KAEEAKKEAEEDKKKAEEAKKD 1752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 370 ASHLEELQHLRSDFAQQQQQERAQHESEL-EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEissscmfPE 448
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIeEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVIND-------SK 1825
|
330 340
....*....|....*....|...
gi 1958758595 449 ETSGRERKEPPDPLDLQLEQPKA 471
Cdd:PTZ00121 1826 EMEDSAIKEVADSKNMQLEEADA 1848
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1055-1393 |
6.83e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 6.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1055 DSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQ-KQQELLERLREESAAKDRLALELHTAEgllEGFKVEKADLQEALGKK 1133
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEElKKAEEKKKAEEAKKAEEDKNMALRKAE---EAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1134 EESEQqliVELEDLRKQLQQASR--ELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRatl 1211
Cdd:PTZ00121 1602 EEEKK---MKAEEAKKAEEAKIKaeELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK--- 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1212 lsQMRVLESELEDQLVQHRGCAQLAEEvttlKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRP 1291
Cdd:PTZ00121 1676 --KAEEAKKAEEDEKKAAEALKKEAEE----AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1292 RPPGPRDSQCAKLDEEVELLQEKLR-EKLDGFNELVIKKDlaDQQLLIQEEEIKHLEETNENIQR--QMAQLQEELEKQR 1368
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRkEKEAVIEEELDEED--EKRRMEVDKKIKDIFDNFANIIEggKEGNLVINDSKEM 1827
|
330 340
....*....|....*....|....*
gi 1958758595 1369 RSTEELEVVNSRNSEIEELKAIIEH 1393
Cdd:PTZ00121 1828 EDSAIKEVADSKNMQLEEADAFEKH 1852
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
158-495 |
7.25e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 7.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 158 MLNGRRAQELALLQSRQQcelELmrEQHAREKEEMALRNEQETAELKEKfRSEMEKTVQMMETLKQDWES-ERELCLETL 236
Cdd:TIGR02168 660 VITGGSAKTNSSILERRR---EI--EELEEKIEELEEKIAELEKALAEL-RKELEELEEELEQLRKELEElSRQISALRK 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 237 RKELSAKHQSEMEGLQNQFQKELSEQKAE-------LEKIFQAKHEAEVSLKNLEA---QHQAAIRKLQEDLRSEHCQY- 305
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEieeleerLEEAEEELAEAEAEIEELEAqieQLKEELKALREALDELRAELt 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 306 -LQDLELRFREKEKAKELELETLQASYEDLKAQS---QEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRS 381
Cdd:TIGR02168 814 lLNEEAANLRERLESLERRIAATERRLEDLEEQIeelSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 382 DFAQQQQQERAQHESELEHLRVYFEkKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISsscmfPEETSGRERKEPPDP 461
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELE-ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT-----LEEAEALENKIEDDE 967
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1958758595 462 LDLQLEQPKAQGSL----------IEDYQEKlsnAEEKIELMKQ 495
Cdd:TIGR02168 968 EEARRRLKRLENKIkelgpvnlaaIEEYEEL---KERYDFLTAQ 1008
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
119-579 |
1.04e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 54.84 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 119 SLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQ 198
Cdd:pfam12128 252 TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQ-WKEKRDELNGELSAADAAVAKDRSELEALEDQ 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 199 ETAELKEkfrsEMEKTVQMMETLKQdWESERELcLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEV 278
Cdd:pfam12128 331 HGAFLDA----DIETAAADQEQLPS-WQSELEN-LEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 279 SLKNLEAQHQAAIRKLQEDLRSEHCQYLQDL-ELRFREKEKAKELELETLQASY-EDLK---AQSQEEIRHLWSQLESMK 353
Cdd:pfam12128 405 ARDRQLAVAEDDLQALESELREQLEAGKLEFnEEEYRLKSRLGELKLRLNQATAtPELLlqlENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 354 TNREeqngSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLrvyfekkLNDAEKTYQEDLTVFQQRLQEAREE 433
Cdd:pfam12128 485 AEVE----RLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQ-------LFPQAGTLLHFLRKEAPDWEQSIGK 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 434 SLESAEISSSCMFPEETSGR--------------ERKEPPDPLDL--QLEQPKAQ-GSLIEDYQEKLSNAEEKIELMKQE 496
Cdd:pfam12128 554 VISPELLHRTDLDPEVWDGSvggelnlygvkldlKRIDVPEWAASeeELRERLDKaEEALQSAREKQAAAEEQLVQANGE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 497 FQKKEAEWELSREDLKrDAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:pfam12128 634 LEKASREETFARTALK-NARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREA 712
|
...
gi 1958758595 577 EQE 579
Cdd:pfam12128 713 RTE 715
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1058-1427 |
1.09e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1058 KQLEDARQLHRCVEKEFRHRDEEMAQaVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKvEKADLQEALGKKEESE 1137
Cdd:COG4717 95 EELEELEEELEELEAELEELREELEK-LEKLLQLLPLYQELEALEAELAELPERLEELEERLE-ELRELEEELEELEAEL 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1138 QQLIVELEDLRKQLQQASR-ELLTLKEENSVLWNQKETFTNE---AKEREAALQKEVESLTRDQWESRKQSEKDRATLLS 1213
Cdd:COG4717 173 AELQEELEELLEQLSLATEeELQDLAEELEELQQRLAELEEEleeAQEELEELEEELEQLENELEAAALEERLKEARLLL 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1214 QMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDkHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRP 1293
Cdd:COG4717 253 LIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALL-FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1294 PGPRDSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQ--RQMAQLQEELEKQRRST 1371
Cdd:COG4717 332 PDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEqaEEYQELKEELEELEEQL 411
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758595 1372 EELEVVNSRNSEIEELKAIIEHLQENQEQLQkAKAEEIEQLHEVIEKLQSELSLMG 1427
Cdd:COG4717 412 EELLGELEELLEALDEEELEEELEELEEELE-ELEEELEELREELAELEAELEQLE 466
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
257-639 |
1.31e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 257 KELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQE------DLRSEhcqyLQDLELRFREKEKAKEL--ELETLQ 328
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEisselpELREE----LEKLEKEVKELEELKEEieELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 329 ASYEDLKAQSQEEIRHLWSQLESMKTNREEqngswepLLAQASHLEELQhlrsdfaqqqqqERAQHESELEHLRVYFEKK 408
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEE-------LEEKVKELKELK------------EKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 409 LNDAEKT---YQEDLTVFQQRLQEAREESLESAEISSscmfpEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSN 485
Cdd:PRK03918 309 LREIEKRlsrLEEEINGIEERIKELEEKEERLEELKK-----KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 486 AE-EKIELMKQEFQKKEAEWElsredlkrDAEEKLASMFLELREKAESEKLSIIN-----------RFELRESSMRHLQD 553
Cdd:PRK03918 384 LTpEKLEKELEELEKAKEEIE--------EEISKITARIGELKKEIKELKKAIEElkkakgkcpvcGRELTEEHRKELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 554 QQAAQISDLERSLREQQGHLRQLEQELTRDEVLLcsqcGKEPSVAQDEKSAILLREKED----CALQLLTAQNRFLEERK 629
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELEKVL----KKESELIKLKELAEQLKELEEklkkYNLEELEKKAEEYEKLK 531
|
410
....*....|
gi 1958758595 630 EIMEKFAKEQ 639
Cdd:PRK03918 532 EKLIKLKGEI 541
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1061-1414 |
1.47e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1061 EDARQLHRCVEKEFRHRdEEMAQAVQKQQELLERLREE-SAAKDRLALELHTAEGLlegfkvekADLQEALGKKEESEQQ 1139
Cdd:PRK02224 258 AEIEDLRETIAETERER-EELAEEVRDLRERLEELEEErDDLLAEAGLDDADAEAV--------EARREELEDRDEELRD 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1140 livELEDLRKQLQQASRELLTLKEENSVLwnqkETFTNEAKEREAALQKEVESlTRDQWESRkqsEKDRATLLSQMRVLE 1219
Cdd:PRK02224 329 ---RLEECRVAAQAHNEEAESLREDADDL----EERAEELREEAAELESELEE-AREAVEDR---REEIEELEEEIEELR 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1220 SELEDQLVQHRGCA----QLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREH-----------------EREEFQQEI 1278
Cdd:PRK02224 398 ERFGDAPVDLGNAEdfleELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphveTIEEDRERV 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1279 KWLEGQLRQAtrprppgprDSQCAKLDEEVELLqEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMA 1358
Cdd:PRK02224 478 EELEAELEDL---------EEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1359 QLQEELEKQRRSTEE----------------------------LEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIE 1410
Cdd:PRK02224 548 ELEAEAEEKREAAAEaeeeaeeareevaelnsklaelkeriesLERIRTLLAAIADAEDEIERLREKREALAELNDERRE 627
|
....
gi 1958758595 1411 QLHE 1414
Cdd:PRK02224 628 RLAE 631
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
123-790 |
1.70e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.21 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 123 EALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQE----LALLQSRQQCELELMREQHAREKEEMALR--- 195
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyllyLDYLKLNEERIDLLQELLRDEQEEIESSKqei 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 196 -NEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAKH--QSEMEGLQNQFQKELSEQKAELEKIFQA 272
Cdd:pfam02463 261 eKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVddEEKLKESEKEKKKAEKELKKEKEEIEEL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 273 KHEAEVSLKNLEA-----QHQAAIRKLQEDLRSEHCQYLQDLELRFREKEKAKELELEtlqasYEDLKAQSQEEIRHLWS 347
Cdd:pfam02463 341 EKELKELEIKREAeeeeeEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE-----LKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 348 QLESMKTNREEQngswepllaQASHLEELQHLRsDFAQQQQQERAQHESELEHLRVYFEKKLNDAEKTYQEDLTVFQQRL 427
Cdd:pfam02463 416 QLEDLLKEEKKE---------ELEILEEEEESI-ELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 428 QEAREESLESAEISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELS 507
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 508 REDLKRDAEEKLASMFLELREKAESEKLSIINRFELRessMRHLQDQQAAQISDLERSLR-EQQGHLRQLEQELTRDEVL 586
Cdd:pfam02463 566 LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI---LNLAQLDKATLEADEDDKRAkVVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 587 LCSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAflldtQEKHSHELQLLQQGHQQQLL 666
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR-----QLEIKKKEQREKEELKKLKL 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 667 ALRMELETKHHSELTEQLASLESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIRDEHKKALELL 746
Cdd:pfam02463 718 EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLK 797
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1958758595 747 RAELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVK 790
Cdd:pfam02463 798 AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2299-2550 |
2.34e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2299 LEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLsr 2378
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL-- 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2379 NAQEACARQDTQAQHALLRKLKAEKAralELEAMLEKVQKQAAHTQQQLEAQAQerclELRREKEVSGNLRSAVDALQTH 2458
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIE---ELEAQIEQLKEELKALREALDELRA----ELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2459 KQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQR--VKEKLRELELQRQRDEHKIEQ 2536
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALalLRSELEELSEELRELESKRSE 912
|
250
....*....|....
gi 1958758595 2537 LQRLVRELRWKEEA 2550
Cdd:TIGR02168 913 LRRELEELREKLAQ 926
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1073-1422 |
5.17e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 5.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1073 EFRHRDEEMAQAVQKQQELLERLREESAAKDrlALELHTAEGLLEgfKVEKADLQEALGKKEESEQQLivelEDLRKQLQ 1152
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKK--AEEAKKAEEAKK--KAEEAKKADEAKKKAEEAKKA----DEAKKKAE 1493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1153 QASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDqwESRKQSEKDRATLLSQMRVLESELEDQLVQHrgc 1232
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD--EAKKAEEKKKADELKKAEELKKAEEKKKAEE--- 1568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1233 AQLAEEVTTLKQQLATLDKHLRSQRqfmdeqaaeREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQ 1312
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEAR---------IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1313 EKLREKLDGFNELviKKdlADQQLLIQEEEIKHLEETNeniQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIE 1392
Cdd:PTZ00121 1640 KKEAEEKKKAEEL--KK--AEEENKIKAAEEAKKAEED---KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
330 340 350
....*....|....*....|....*....|
gi 1958758595 1393 HLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1422
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1058-1423 |
5.18e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 5.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1058 KQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA-----LELHTAEGLLEGFKVEKADLQEALGK 1132
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgreLTEEHRKELLEEYTAELKRIEKELKE 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1133 KEESEQQLIVELEDLRKQLQQASR---------ELLTLKEENSVL----WNQKETFTNEAKEREAALQKEVESLTRDqWE 1199
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESEliklkelaeQLKELEEKLKKYnleeLEKKAEEYEKLKEKLIKLKGEIKSLKKE-LE 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1200 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEvttlkqqlaTLDKHLRSQRQFMDE--QAAEREHEREEFQQE 1277
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE---------ELEERLKELEPFYNEylELKDAEKELEREEKE 620
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1278 IKWLEGQLRQATRprppgprdsQCAKLDEEVELLQEKLREKLDGFNE-----LVIKKDLADQQLLIQEEEIKHLEETNEN 1352
Cdd:PRK03918 621 LKKLEEELDKAFE---------ELAETEKRLEELRKELEELEKKYSEeeyeeLREEYLELSRELAGLRAELEELEKRREE 691
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758595 1353 IQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKaiiehlqenqEQLQKAKAEEIEQLHEVIEKLQSEL 1423
Cdd:PRK03918 692 IKKTLEKLKEELEEREKAKKELEKLEKALERVEELR----------EKVKKYKALLKERALSKVGEIASEI 752
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2069-2372 |
5.62e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2069 LGDYNSLVKKLEKVIQEQGDLQKVREHAclpdrSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLR 2148
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEEL-----TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2149 RQVELLAYKVEQEKCIANDLQKTLSKEQEAA---SDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRLR 2225
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2226 yghvtwsySGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREgqSSRALEELKISLEKQLAQ 2305
Cdd:TIGR02168 386 --------SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELEELEEELEELQEE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758595 2306 NNQLCVALKHERAAKDNLQKELQIEASRcealLAQEKGQLSELRKSLEAERSRSLELSEALQHERLL 2372
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERE----LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
121-361 |
7.74e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 7.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 121 ELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELallqSRQQCELELMREQHAREKEEMAL---RNE 197
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL----ERQLEELEAQLEELESKLDELAEelaELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 198 QETAELKEKFRS------EMEKTVQMMETLKQDWESErelcLETLRKELsAKHQSEMEGLQNQFQkELSEQKAELEKifQ 271
Cdd:TIGR02168 344 EKLEELKEELESleaeleELEAELEELESRLEELEEQ----LETLRSKV-AQLELQIASLNNEIE-RLEARLERLED--R 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 272 AKHEAEVSLKNLEAQHQAAIRKLQEDLrSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKaQSQEEIRHLWSQLES 351
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAEL-EELEEELEELQEELERLEEALEELREELEEAEQALD-AAERELAQLQARLDS 493
|
250
....*....|
gi 1958758595 352 MKTNREEQNG 361
Cdd:TIGR02168 494 LERLQENLEG 503
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1051-1284 |
8.90e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 8.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1051 DMALDSSKQLEDARQLhrcvEKEFR--HRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKAdlQE 1128
Cdd:COG4913 215 EYMLEEPDTFEAADAL----VEHFDdlERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFA--QR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1129 ALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKEtftNEAKEREAALQKEVESLTRDqwesRKQSEKDR 1208
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR---GNGGDRLEQLEREIERLERE----LEERERRR 361
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958758595 1209 ATLLSQMRVLESELEDQLvqhrgcAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEF---QQEIKWLEGQ 1284
Cdd:COG4913 362 ARLEALLAALGLPLPASA------EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELrelEAEIASLERR 434
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1030-1396 |
9.68e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1030 ECEQPIRKVYQSLSTA---VEGLLDMALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA 1106
Cdd:PRK02224 325 ELRDRLEECRVAAQAHneeAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1107 LELHTAEGLLEGFKVEK-----------ADLQEALGKKEESEQQL----------------IVE-LEDLRKQLQQASREL 1158
Cdd:PRK02224 405 VDLGNAEDFLEELREERdelrereaeleATLRTARERVEEAEALLeagkcpecgqpvegspHVEtIEEDRERVEELEAEL 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1159 LTLKEENSVLWNQKETFTNEAK-EREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLA- 1236
Cdd:PRK02224 485 EDLEEEVEEVEERLERAEDLVEaEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAe 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1237 -------EEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHereefqqeikwleGQLRQATRPRppgpRDSQCAKLDEEVE 1309
Cdd:PRK02224 565 eeaeearEEVAELNSKLAELKERIESLERIRTLLAAIADA-------------EDEIERLREK----REALAELNDERRE 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1310 LLQEK------LREKLDG--FNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRN 1381
Cdd:PRK02224 628 RLAEKrerkreLEAEFDEarIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRV 707
|
410
....*....|....*
gi 1958758595 1382 SEIEELKAIIEHLQE 1396
Cdd:PRK02224 708 EALEALYDEAEELES 722
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
486-1420 |
9.80e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 9.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 486 AEEKIELMKQEFQKKEAEwELSREDLKRDAEEKLasmfLELREKAESEKLSIINRFELRESSMRHLQDQQAA----QISD 561
Cdd:pfam02463 143 KIEIIAMMKPERRLEIEE-EAAGSRLKRKKKEAL----KKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyQLKE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 562 LERSLREQQGHLRQLEQELTRDEVLLcsqcGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDA 641
Cdd:pfam02463 218 KLELEEEYLLYLDYLKLNEERIDLLQ----ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAK 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 642 FLldtQEKHSHELQLLQQGHQQQLLALRMELETKHHSELTEQLASLESKQQALLETHVAKMQVKHDAEISALEKRHLSNL 721
Cdd:pfam02463 294 EE---EELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQ 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 722 DELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVKMSAQhtesgkg 801
Cdd:pfam02463 371 LEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQ------- 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 802 paadlqgahqkapamaLHNEGHQLEEDGDAALGGADTEDLQHHAEPREREGPHTVEMQTSQTELAKPQELQASQDQGAQV 881
Cdd:pfam02463 444 ----------------GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 882 RDQVFLLSRELEEcrGELEQLQQRRERENQEGATLICMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISE 961
Cdd:pfam02463 508 GLKVLLALIKDGV--GGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIP 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 962 RAGLLLDHeDAVDTSGAQLAAAALGEMWPDEGLLDIDRTLPEGAEtSSVCEISSHVCESFFMSPENTQECEQPIRKVYQS 1041
Cdd:pfam02463 586 KLKLPLKS-IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIL-KDTELTKLKESAKAKESGLRKGVSLEEGLAEKSE 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1042 LSTAVEGLLDMALDSSKQLEDARQLHRcvEKEFRHRDEEMAQAVQKQQELLERLREESAAKD--RLALELHTAEGLLEGF 1119
Cdd:pfam02463 664 VKASLSELTKELLEIQELQEKAESELA--KEEILRRQLEIKKKEQREKEELKKLKLEAEELLadRVQEAQDKINEELKLL 741
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1120 KVEKAD-LQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQW 1198
Cdd:pfam02463 742 KQKIDEeEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQ 821
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1199 ESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEI 1278
Cdd:pfam02463 822 LLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE 901
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1279 KWLEGQlrqatrprppgpRDSQCAKLDEEVELLQEKLREKLDGFNELviKKDLADQQLLIQEEEIKHLEETNENIQRQMA 1358
Cdd:pfam02463 902 LEEESQ------------KLNLLEEKENEIEERIKEEAEILLKYEEE--PEELLLEEADEKEKEENNKEEEEERNKRLLL 967
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958758595 1359 QLQEELEKQRRSTEELEVVNSRNSEIEElkaiiehlqenqeQLQKAKAEEIEQLHEVIEKLQ 1420
Cdd:pfam02463 968 AKEELGKVNLMAIEEFEEKEERYNKDEL-------------EKERLEEEKKKLIRAIIEETC 1016
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
233-842 |
1.30e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 233 LETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSEhcqylQDLELR 312
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-----YELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 313 FREKEKAKELELETLQASYEDLkAQSQEEIRHLWSQLESMKTNREEQNGSwepLLAQASHLEELQHLRSDFAQQQQQERA 392
Cdd:COG1196 297 LARLEQDIARLEERRRELEERL-EELEEELAELEEELEELEEELEELEEE---LEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 393 QHESELEHLrvyfeKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEissscmfpeetsgrerkeppdpldlqleqpkAQ 472
Cdd:COG1196 373 ELAEAEEEL-----EELAEELLEALRAAAELAAQLEELEEAEEALLE-------------------------------RL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 473 GSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEKLASMFLELREKAESEKLSIINRFELRESSMRHLQ 552
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 553 DQQAAQISDLERSLREQQGhlrQLEQELTRDEVLLCSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQNRFLEERKEim 632
Cdd:COG1196 497 LEAEADYEGFLEGVKAALL---LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA-- 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 633 ekfakEQDAFLLDTQEKHSHELQLLQQGHQQQLLALrmeletkhhsELTEQLASLESKQQALLETHVAKMQVKHDAEISA 712
Cdd:COG1196 572 -----GRATFLPLDKIRARAALAAALARGAIGAAVD----------LVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 713 LEKRHLSNLDELESCYVADIQTIRDEHKKALELLRAELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVKMS 792
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 1958758595 793 AQHTESGKGPAADLQGAHQKAPAMALHNEGHQLEEDGDAALGGADTEDLQ 842
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1070-1423 |
1.43e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1070 VEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGK---KEESEQQLIVELED 1146
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKiknKLLKLELLLSNLKK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1147 LRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESL--TRDQWESRKQSEKDRATLLSQMRVLESELED 1224
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLnqLKDEQNKIKKQLSEKQKELEQNNKKIKELEK 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1225 QLvqhrgcAQLAEEVTTLKQQ-LATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPP-----GPRD 1298
Cdd:TIGR04523 289 QL------NQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNsesenSEKQ 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1299 SQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEE-------EIKHLEETNENIQRQMAQLQEELEKQRRST 1371
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeQIKKLQQEKELLEKEIERLKETIIKNNSEI 442
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958758595 1372 EELE-VVNSRNSEIEELKAIIEHLQENQEQLQKakaeEIEQLHEVIEKLQSEL 1423
Cdd:TIGR04523 443 KDLTnQDSVKELIIKNLDNTRESLETQLKVLSR----SINKIKQNLEQKQKEL 491
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1044-1422 |
1.69e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1044 TAVEGLLDMALDSSKQLEDarQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREE----SAAKDRLALELHTAEGLLEGF 1119
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKA--QIEEKEEKDLHERLNGLESELAELDEEIERYEEQreqaRETRDEADEVLEEHEERREEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1120 KVEKADLQEALGKKEESEQqlivELEDLRKQLQQASRELLTLKEENSVLWNQKETftnEAKEREAALQKevesltRDQWE 1199
Cdd:PRK02224 254 ETLEAEIEDLRETIAETER----EREELAEEVRDLRERLEELEEERDDLLAEAGL---DDADAEAVEAR------REELE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1200 SRKQSEKDRatlLSQMRVLESELEDQLVQHRGCA-QLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHereeFQQEI 1278
Cdd:PRK02224 321 DRDEELRDR---LEECRVAAQAHNEEAESLREDAdDLEERAEELREEAAELESELEEAREAVEDRREEIEE----LEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1279 KWLEGQLRQATRPRppgprdsqcakldEEVELLQEKLREKLDGFNELV---------IKKDLADQQLLIQE--------- 1340
Cdd:PRK02224 394 EELRERFGDAPVDL-------------GNAEDFLEELREERDELREREaeleatlrtARERVEEAEALLEAgkcpecgqp 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1341 -EEIKHLEETNENIQRqMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQK----------AKAEEI 1409
Cdd:PRK02224 461 vEGSPHVETIEEDRER-VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEliaerretieEKRERA 539
|
410
....*....|...
gi 1958758595 1410 EQLHEVIEKLQSE 1422
Cdd:PRK02224 540 EELRERAAELEAE 552
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1049-1451 |
2.39e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.11 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1049 LLDMALDS-SKQLEDARQLHRCVEKEFrhrdEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQ 1127
Cdd:pfam05483 381 IITMELQKkSSELEEMTKFKNNKEVEL----EELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1128 EALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTrdqwESRKQSEKd 1207
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDII----NCKKQEER- 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1208 ratLLSQMRVLEseledqlvqhrgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQ 1287
Cdd:pfam05483 532 ---MLKQIENLE-----------------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKI 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1288 AtrprppgprDSQCAKLDEEVElLQEKLREKLDGFNELVIKKDLAD-QQLLIQEEEIKHLEETNENIQRQMAQL----QE 1362
Cdd:pfam05483 592 L---------ENKCNNLKKQIE-NKNKNIEELHQENKALKKKGSAEnKQLNAYEIKVNKLELELASAKQKFEEIidnyQK 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1363 ELEKQRRSTEELEvvnsrnSEIEELKAIIEHLQENQEQLQKAKAEEI-----------EQLHEVIEKLQSELSLMGPTVH 1431
Cdd:pfam05483 662 EIEDKKISEEKLL------EEVEKAKAIADEAVKLQKEIDKRCQHKIaemvalmekhkHQYDKIIEERDSELGLYKNKEQ 735
|
410 420
....*....|....*....|
gi 1958758595 1432 EMSDLpPGSLHTELSCLQAE 1451
Cdd:pfam05483 736 EQSSA-KAALEIELSNIKAE 754
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1057-1415 |
2.78e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1057 SKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEglLEGFKVEKADLQEALGKKEES 1136
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKE--VKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1137 EQQL-----------------IVELEDLRKQLQQASRELLTL------KEENSVLWNQKETFTNEAKEREAALQKEVESL 1193
Cdd:TIGR00606 524 MEQLnhhtttrtqmemltkdkMDKDEQIRKIKSRHSDELTSLlgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1194 TRDQWESRKQSEKDRATLLSqmrvleseLEDQLVQHRGC-------AQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAE 1266
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSS--------YEDKLFDVCGSqdeesdlERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDE 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1267 RE------HEREEFQQEIKWLEGQLRQATRPRPpgprdsqcakldEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQE 1340
Cdd:TIGR00606 676 NQsccpvcQRVFQTEAELQEFISDLQSKLRLAP------------DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758595 1341 EEIKHLEETNENIQRQMAQLQEELEKQRRsteELEVVNSRNSEIEELK---AIIEHLQENQEQLQKAKAEEIEQLHEV 1415
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQET---LLGTIMPEEESAKVCLtdvTIMERFQMELKDVERKIAQQAAKLQGS 818
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
120-796 |
3.23e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 120 LELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLngrraQELALLQSRQQCELELMREQHAREKEEMALRNEQE 199
Cdd:TIGR00618 196 AELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREAL-----QQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 200 TAELKEKFRSEMEKtvqmmetlkqdwesERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVS 279
Cdd:TIGR00618 271 ELRAQEAVLEETQE--------------RINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 280 LKNLEAQHQAAIRKLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQeEIRHLWSQLESMKTNREEQ 359
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQ-SLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 360 NGSWEPL---LAQASHLEELQHLRSDFAQQQQQERAQHESELEHLRVYFEKKLNdaEKTYQEDlTVFQQRLQEAREESLE 436
Cdd:TIGR00618 416 TSAFRDLqgqLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK--EREQQLQ-TKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 437 SAEISSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSL-IEDYQEKLSNAEEKIELMKQEFQKKEAEWElSREDLKRDA 515
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQrGEQTYAQLETSEEDVYHQLTSERKQRASLK-EQMQEIQQS 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 516 EEKLASMFLELREkaeseklsIINRFELRESSMRHLQDQQaaqiSDLERSLR-EQQGHLRQLEQELTRDEVLLC-SQCGK 593
Cdd:TIGR00618 572 FSILTQCDNRSKE--------DIPNLQNITVRLQDLTEKL----SEAEDMLAcEQHALLRKLQPEQDLQDVRLHlQQCSQ 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 594 EPSVAQDEKSAI---LLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQE--KHSHELQLLQQGHQQQLLAL 668
Cdd:TIGR00618 640 ELALKLTALHALqltLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEmlAQCQTLLRELETHIEEYDRE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 669 RMELETKHHSELTEQLASLESKQQALLE-THVAKMQVKHDAEISALEKRHLSNLDELESCYVADIQTIrdEHKKALELLR 747
Cdd:TIGR00618 720 FNEIENASSSLGSDLAAREDALNQSLKElMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEI--QFFNRLREED 797
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 1958758595 748 AELEEQLQKKDSCHREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHT 796
Cdd:TIGR00618 798 THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGE 846
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1065-1399 |
3.24e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.74 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1065 QLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEES---EQQLI 1141
Cdd:pfam17380 292 KFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELErirQEEIA 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1142 VELEDLRkqlqQASRELLTLKEENSVLWNQKETfTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATllsQMRVLESE 1221
Cdd:pfam17380 372 MEISRMR----ELERLQMERQQKNERVRQELEA-ARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR---EVRRLEEE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1222 LEDQLVQHRgcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgprdsqc 1301
Cdd:pfam17380 444 RAREMERVR------LEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQ----------- 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1302 akldeevELLQEKLREKLdgfnelvIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRN 1381
Cdd:pfam17380 507 -------AMIEEERKRKL-------LEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAME 572
|
330
....*....|....*...
gi 1958758595 1382 SEIEELKAIIEHLQENQE 1399
Cdd:pfam17380 573 REREMMRQIVESEKARAE 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1064-1501 |
3.45e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1064 RQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLA---LELHTAEGLLEGFKVEKADLQEALGKKEESEQ-- 1138
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAelqEELEELEEELEELEAELEELREELEKLEKLLQll 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1139 QLIVELEDLRKQLQQASRELLTLKEENSV---LWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQM 1215
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEElreLEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1216 RVLESELEdqlvqhrgcaQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPG 1295
Cdd:COG4717 209 AELEEELE----------EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1296 PRDSQCAKLDEEVELLQEK--LREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEE 1373
Cdd:COG4717 279 LFLVLGLLALLFLLLAREKasLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1374 LEVVNSRNSEIEELKAIIEHLQ-ENQEQLQKA--KAEEIEQLHEVIEKLQSELSLMGPTVHE-MSDLPPGSLHTELSCLQ 1449
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGvEDEEELRAAleQAEEYQELKEELEELEEQLEELLGELEElLEALDEEELEEELEELE 438
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1958758595 1450 AEgmgGQALHNELQAAQAAKGAFGQLLADHGHSQALEALQERLQDAEAAAAR 1501
Cdd:COG4717 439 EE---LEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRE 487
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1328-1550 |
3.79e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 3.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1328 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKA 1406
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALArRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1407 EEIEQLHEVIEKLQselsLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLladhghSQALE 1486
Cdd:COG4942 101 AQKEELAELLRALY----RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL------RAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958758595 1487 ALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNK 1550
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
234-534 |
3.82e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 49.24 E-value: 3.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 234 ETLRKELSAKHQSEMEGLQNQFQKELSEQKaelekifqaKHEAEVSLKNLEAQHQAAIRKlQEDLRSEHCQYLQDLELRF 313
Cdd:NF033838 109 EKSEAELTSKTKKELDAAFEQFKKDTLEPG---------KKVAEATKKVEEAEKKAKDQK-EEDRRNYPTNTYKTLELEI 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 314 REKE-KAKELELETLQAsyEDLKAQSQEEIRHLWSQLESMKtnreeqngswepllAQASHLEELQHLRsdfaqqqqqERA 392
Cdd:NF033838 179 AESDvEVKKAELELVKE--EAKEPRDEEKIKQAKAKVESKK--------------AEATRLEKIKTDR---------EKA 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 393 QHESEL---EHLRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETsgrerkePPDPlDLQLEQP 469
Cdd:NF033838 234 EEEAKRradAKLKEAVEKNVATSEQDKPKRRAKRGVLGEPATPDKKENDAKSSDSSVGEET-------LPSP-SLKPEKK 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 470 KAQGS-LIEDYQEKLSNAEEK--------------IELMKQEFQKKEAEWELSREDLKRDA-EEKLAsmflELREKAESE 533
Cdd:NF033838 306 VAEAEkKVEEAKKKAKDQKEEdrrnyptntyktleLEIAESDVKVKEAELELVKEEAKEPRnEEKIK----QAKAKVESK 381
|
.
gi 1958758595 534 K 534
Cdd:NF033838 382 K 382
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1116-1421 |
3.88e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1116 LEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEakerEAALQKEVESLTR 1195
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ----DSVKELIIKNLDN 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1196 dqweSRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVTTLKQQLatldKHLRSQRQFMDEQAAEREHEREEFQ 1275
Cdd:TIGR04523 462 ----TRESLETQLKVLSRSINKIKQNLE----------QKQKELKSKEKEL----KKLNEEKKELEEKVKDLTKKISSLK 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1276 QEIKWLEgqlrqatrprppgprdSQCAKLDEEVELLQEKLREKLDGFNELVIKKDLADQQlliqeEEIKHLEETNENIQR 1355
Cdd:TIGR04523 524 EKIEKLE----------------SEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKN-----KEIEELKQTQKSLKK 582
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758595 1356 QMAQLQEELEKQRRSTEELevvnsrNSEIEELKAIIEHLqenQEQLQKAKAEEiEQLHEVIEKLQS 1421
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDL------IKEIEEKEKKISSL---EKELEKAKKEN-EKLSSIIKNIKS 638
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2280-2550 |
4.25e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 4.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2280 RHLQRegQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEAL---LAQEKGQLSELRKSLEAER 2356
Cdd:COG1196 203 EPLER--QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELeaeLAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2357 srsLELSEALQHERLLTEQLSRnaqeacarqdtqaqhaLLRKLKAEKARALELEAMLEKvqkqaahtqqqleaQAqercL 2436
Cdd:COG1196 281 ---LELEEAQAEEYELLAELAR----------------LEQDIARLEERRRELEERLEE--------------LE----E 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2437 ELRREKEvsgnlrsavdALQTHKQElgccLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDkRKWQRV 2516
Cdd:COG1196 324 ELAELEE----------ELEELEEE----LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE-ELAEEL 388
|
250 260 270
....*....|....*....|....*....|....
gi 1958758595 2517 KEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2550
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2075-2550 |
4.25e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 4.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2075 LVKKLEKVIQEQGDLQKVREHAclpDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELL 2154
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEA---KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2155 AYKVEQEKCIANDLQKTLSKEQEA------ASDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEVLRlrygh 2228
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKAdeakkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK----- 1471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2229 vtwsysgtSSASAGRAVLDGKENELKVVLEElecERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNnq 2308
Cdd:PTZ00121 1472 --------ADEAKKKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE-- 1538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2309 lcvALKHERAAKDNLQKELQiEASRCEALLAQEKGQLSELRKSL---EAERSRSLELSEALQHERLLTEQLSRNAQEACA 2385
Cdd:PTZ00121 1539 ---AKKAEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2386 RQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCC 2465
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2466 LEREREKAAWLQAELEQLSARVKQQEARQDEK----RMDRRSSREDLDKRKwqrvKEKLRELELQRQRDEHKIEQLQRLV 2541
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEenkiKAEEAKKEAEEDKKK----AEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
....*....
gi 1958758595 2542 RELRWKEEA 2550
Cdd:PTZ00121 1771 EEIRKEKEA 1779
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
201-544 |
4.47e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 4.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 201 AELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELSAKhqSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSL 280
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 281 KNLEAQHQAAIRKLQEDLRSEhcQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLESmktNREEQN 360
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKE--EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD---DEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 361 GSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEhlRVYFEKKLNDAEKTYQEDLTVFQQRLQEAREESLESAEI 440
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEE--EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 441 SSSCMFPEETSGRERKEPPDPLDLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKRDAEEKLA 520
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
330 340
....*....|....*....|....
gi 1958758595 521 SMFLELREKAESEKLSIINRFELR 544
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERS 499
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
168-507 |
4.70e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 168 ALLQSRQQCELELMREQHAR-EKEEMA--LRNEQETAELKEKFRSEMEKTVQM-METLKQDWESERELclETLRKElsaK 243
Cdd:pfam17380 283 AVSERQQQEKFEKMEQERLRqEKEEKAreVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL--ERIRQE---E 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 244 HQSEMEGLQNQFQKELSEQKAELEKI-FQAKHEAEVSLKNLEAQHQAAIrkLQEDLRSEHCQYLQDLELRFREKEKAKEL 322
Cdd:pfam17380 358 RKRELERIRQEEIAMEISRMRELERLqMERQQKNERVRQELEAARKVKI--LEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 323 ELETLQASYEDLKAQSQEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEHLR 402
Cdd:pfam17380 436 EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKR 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 403 VYFEKKLNDAEKTYQEdltvfQQRLQEAREESLESAEIssscmfpeetsgRERKeppdpldlqleQPKAQGSLIEDYQEK 482
Cdd:pfam17380 516 KLLEKEMEERQKAIYE-----EERRREAEEERRKQQEM------------EERR-----------RIQEQMRKATEERSR 567
|
330 340
....*....|....*....|....*..
gi 1958758595 483 LSNAEEKIELMKQ--EFQKKEAEWELS 507
Cdd:pfam17380 568 LEAMEREREMMRQivESEKARAEYEAT 594
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
178-964 |
5.46e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 5.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 178 LELMREQHAREKEEMAlRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKElsakHQSEmEGLQNQFQK 257
Cdd:pfam15921 76 IERVLEEYSHQVKDLQ-RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRE----SQSQ-EDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 258 ELseqkaelekifqakHEAEvslknleaqhqaAIRKLQEDLRSEHCQYLQDLelrfREKEKAKELELETLQASYEDLKAQ 337
Cdd:pfam15921 150 TV--------------HELE------------AAKCLKEDMLEDSNTQIEQL----RKMMLSHEGVLQEIRSILVDFEEA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 338 SQEEIRhlwsQLESMKTNREEQNGSwepllAQASHLEELqhlrsdfaqqqqqeraqhESELEHL--RVY-FEKKLNDAEK 414
Cdd:pfam15921 200 SGKKIY----EHDSMSTMHFRSLGS-----AISKILREL------------------DTEISYLkgRIFpVEDQLEALKS 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 415 TYQEDLTVFQQRLQEAREESLESAEISSSCMFPEETSGRERKEP-PDPLDLQLEQPKAQGSLiedYQEKLSNAEEKIELM 493
Cdd:pfam15921 253 ESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSiQSQLEIIQEQARNQNSM---YMRQLSDLESTVSQL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 494 KQEFQKKEAEWELSREDLkrdaEEKLASMFLELRE-KAESEKLSiinrfelRESSmrHLQDQQAAQISDL-----ERSLR 567
Cdd:pfam15921 330 RSELREAKRMYEDKIEEL----EKQLVLANSELTEaRTERDQFS-------QESG--NLDDQLQKLLADLhkrekELSLE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 568 EQQG---------------HLRQ----LEQELTRDEVLLCSQCGKEPSVAQDEKSAILLREKEDCALQLLTAQnrfLEER 628
Cdd:pfam15921 397 KEQNkrlwdrdtgnsitidHLRRelddRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ---LEST 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 629 KEIMEKFAKEQDAflldtqekhshelqllqqghqqqllaLRMELETKHHSeLTEQLASLESKQQALLETHVAKMQVKHDA 708
Cdd:pfam15921 474 KEMLRKVVEELTA--------------------------KKMTLESSERT-VSDLTASLQEKERAIEATNAEITKLRSRV 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 709 EISALEKRHLSNldelescyvadiqtiRDEHKKALELLRAELEEQLQKKDSChREILTQELEKLklkhaeelqsvrnslr 788
Cdd:pfam15921 527 DLKLQELQHLKN---------------EGDHLRNVQTECEALKLQMAEKDKV-IEILRQQIENM---------------- 574
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 789 VKMSAQHTESgkgpaadlqgahqkapAMALHNEGHQLEED-GDAALGGADTEDLQHHAEPREREgphtVEMQTSQTELAK 867
Cdd:pfam15921 575 TQLVGQHGRT----------------AGAMQVEKAQLEKEiNDRRLELQEFKILKDKKDAKIRE----LEARVSDLELEK 634
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 868 PQELQASQDQGAQVRD---QVFLLSRELEECRGELEQLQQRRE-------RENQEGATLICMLRADVDLAQSEGKALRDA 937
Cdd:pfam15921 635 VKLVNAGSERLRAVKDikqERDQLLNEVKTSRNELNSLSEDYEvlkrnfrNKSEEMETTTNKLKMQLKSAQSELEQTRNT 714
|
810 820
....*....|....*....|....*..
gi 1958758595 938 LRRLLDLFGETLKAAVTLKSRISERAG 964
Cdd:pfam15921 715 LKSMEGSDGHAMKVAMGMQKQITAKRG 741
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
121-357 |
7.37e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 7.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 121 ELEALRLSLNNMHTAQLELTQANLQKEKETALTEL---REMLNGRRAQELALLQSRQQCELELMREQHAREKEEMALRNE 197
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLqmeRQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 198 QETAELKEKFRSEMEKTVQmMETLKQDwESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAE--LEKIFQAKHE 275
Cdd:pfam17380 429 QEEARQREVRRLEEERARE-MERVRLE-EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRkiLEKELEERKQ 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 276 AEVSLKNLEaqhqaaiRKLQEDLRSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEirhlwSQLESMKTN 355
Cdd:pfam17380 507 AMIEEERKR-------KLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER-----SRLEAMERE 574
|
..
gi 1958758595 356 RE 357
Cdd:pfam17380 575 RE 576
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
128-563 |
7.78e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 7.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 128 SLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQeLALLQSRQQCELELMREQHAREKEEMALRNEQETAELKEKF 207
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQ-LEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKA 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 208 RSEMEKTVQMMETLKQDWESERElcletlRKELSAKHQSEMEGLQNQFQKELSEqkaelekifqAKHEAEVSLKNLEAQH 287
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARN------QNSMYMRQLSDLESTVSQLRSELRE----------AKRMYEDKIEELEKQL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 288 QAAIRKLQEdLRSEHCQY----------LQDLELRFREKEKAKELELETLQASYeDLKAQSQEEIRHLWSQLES------ 351
Cdd:pfam15921 352 VLANSELTE-ARTERDQFsqesgnlddqLQKLLADLHKREKELSLEKEQNKRLW-DRDTGNSITIDHLRRELDDrnmevq 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 352 -----MKTNREEQNGSWEPLLAQASHLEELQHLRSDFAqqqqqerAQHESELEHLRVYFEK------KLNDAEKTYQeDL 420
Cdd:pfam15921 430 rlealLKAMKSECQGQMERQMAAIQGKNESLEKVSSLT-------AQLESTKEMLRKVVEEltakkmTLESSERTVS-DL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 421 TVFQQRLQEAREESleSAEIssscmfpeeTSGRERkeppdpLDLQLEQPKAqgslIEDYQEKLSNAEEKIELMKQEFQKK 500
Cdd:pfam15921 502 TASLQEKERAIEAT--NAEI---------TKLRSR------VDLKLQELQH----LKNEGDHLRNVQTECEALKLQMAEK 560
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758595 501 EAEWELSR---EDLKRDAEEKLASMFLELREKAESEKLSIINRFELREssMRHLQDQQAAQISDLE 563
Cdd:pfam15921 561 DKVIEILRqqiENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE--FKILKDKKDAKIRELE 624
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
146-542 |
1.14e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 146 KEKETALTELREMLNG--RRAQELALLQSR-QQCELELMREQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMMETLK 222
Cdd:PRK03918 210 NEISSELPELREELEKleKEVKELEELKEEiEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 223 QDWESEREL--CLETLRKELS------AKHQSEMEGLQNQFqKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQA--AIR 292
Cdd:PRK03918 290 EKAEEYIKLseFYEEYLDELReiekrlSRLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEELEERHELyeEAK 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 293 KLQEDLRsehcqylqdlelrfREKEKAKELELETLQASYEDL---KAQSQEEIRHLWSQLESMKTNREEQNGSwepllaq 369
Cdd:PRK03918 369 AKKEELE--------------RLKKRLTGLTPEKLEKELEELekaKEEIEEEISKITARIGELKKEIKELKKA------- 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 370 ashLEELQHLRSDFAQQQQQERAQHESELehLRVYfEKKLNDAEKTYQEdltvFQQRLQEAREE--SLESAEISSSCMFP 447
Cdd:PRK03918 428 ---IEELKKAKGKCPVCGRELTEEHRKEL--LEEY-TAELKRIEKELKE----IEEKERKLRKElrELEKVLKKESELIK 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 448 EETSGRERKEppdpldlqleqpkAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEWELSREDLKR--DAEEKLASMFLE 525
Cdd:PRK03918 498 LKELAEQLKE-------------LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKleELKKKLAELEKK 564
|
410
....*....|....*..
gi 1958758595 526 LREkAESEKLSIINRFE 542
Cdd:PRK03918 565 LDE-LEEELAELLKELE 580
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1120-1424 |
1.15e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1120 KVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNE----AKEREAALQKEVESLTR 1195
Cdd:TIGR04523 238 QQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEisdlNNQKEQDWNKELKSELK 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1196 DQWESRKQSEKDratlLSQMRVLESELEDQLvqhrgcAQLAEEVTTLKQQLATLDKHLR---SQRQFMDEQAAEREHERE 1272
Cdd:TIGR04523 318 NQEKKLEEIQNQ----ISQNNKIISQLNEQI------SQLKKELTNSESENSEKQRELEekqNEIEKLKKENQSYKQEIK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1273 EFQQEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQ---EKLREKLDGFNELVIK-----KDLADQQLlIQEEEIK 1344
Cdd:TIGR04523 388 NLESQINDLESKIQNQ---------EKLNQQKDEQIKKLQqekELLEKEIERLKETIIKnnseiKDLTNQDS-VKELIIK 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1345 HLEETNENIQRQMAQLQEELEKQRRSTEELEV-VNSRNSEIEELKAIIEHLQENQEQLQKAKAE---EIEQLHEVIEKLQ 1420
Cdd:TIGR04523 458 NLDNTRESLETQLKVLSRSINKIKQNLEQKQKeLKSKEKELKKLNEEKKELEEKVKDLTKKISSlkeKIEKLESEKKEKE 537
|
....
gi 1958758595 1421 SELS 1424
Cdd:TIGR04523 538 SKIS 541
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1119-1538 |
1.19e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1119 FKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRElltlkeensvlwnqketftNEAKEREAALQKEVESltRDQW 1198
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE-------------------REKAERYQALLKEKRE--YEGY 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1199 E---SRKQSEKDRATLLSQMRVLESELEDQLVQhrgCAQLAEEVTTLKQQLATLDKHLRSQRQfmDEQAAerehereeFQ 1275
Cdd:TIGR02169 227 EllkEKEALERQKEAIERQLASLEEELEKLTEE---ISELEKRLEEIEQLLEELNKKIKDLGE--EEQLR--------VK 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1276 QEIKWLEGQLRQAtrprppgprDSQCAKLDEEVELLQEKLREkldgfnelvikkdlADQQLLIQEEEIKHLEETNENIQR 1355
Cdd:TIGR02169 294 EKIGELEAEIASL---------ERSIAEKERELEDAEERLAK--------------LEAEIDKLLAEIEELEREIEEERK 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1356 QMAQLQEELEKQRRSTEELEvvnsrnSEIEELKAIIEHLQENQEQLQkakaEEIEQLHEVIEKLQSELSLMGPTVHEmsd 1435
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLR------AELEEVDKEFAETRDELKDYR----EKLEKLKREINELKRELDRLQEELQR--- 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1436 lppgsLHTELSCLQAEGMGGQALHNELQAAQAAKGA--------FGQLLADHG-HSQALEALQERLQDAEaaaaRHLTEL 1506
Cdd:TIGR02169 418 -----LSEELADLNAAIAGIEAKINELEEEKEDKALeikkqewkLEQLAADLSkYEQELYDLKEEYDRVE----KELSKL 488
|
410 420 430
....*....|....*....|....*....|..
gi 1958758595 1507 EHCVALRQAEVEAMASRIQEFEATLKAKEAII 1538
Cdd:TIGR02169 489 QRELAEAEAQARASEERVRGGRAVEEVLKASI 520
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2284-2550 |
1.34e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2284 REGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEaERSRSLELS 2363
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE-EAKKADEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2364 EALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKE 2443
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2444 VSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARvKQQEARQ--DEKRMDRRSSREDLDKRKWQRVKEKLR 2521
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK-KADEAKKkaEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
|
250 260 270
....*....|....*....|....*....|.
gi 1958758595 2522 ElelQRQRDE--HKIEQLQRLVRELRWKEEA 2550
Cdd:PTZ00121 1481 E---AKKADEakKKAEEAKKKADEAKKAAEA 1508
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1096-1426 |
1.52e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1096 REESAAKDRLA---LELHTAEGLLEGFKVEKADLQEALGKKEE------SEQQLIVELEDLRKQLQQASRELLTLKEENS 1166
Cdd:TIGR00606 584 KEINQTRDRLAklnKELASLEQNKNHINNELESKEEQLSSYEDklfdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATA 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1167 VLWNQKETFTNEAK------EREAALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAE--- 1237
Cdd:TIGR00606 664 VYSQFITQLTDENQsccpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDlke 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1238 -EVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQE---------IKWLEGQLRQATRPRPPGPRDSQCAKLDEE 1307
Cdd:TIGR00606 744 kEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcltdvtiMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1308 VELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV----VNSRNSE 1383
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVElsteVQSLIRE 903
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1958758595 1384 IEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSELSLM 1426
Cdd:TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
508-1158 |
1.60e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 508 REDLKRDAEekLASMFLELREKAE----SEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRD 583
Cdd:COG1196 202 LEPLERQAE--KAERYRELKEELKeleaELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 584 EVLLcsqcgkepsVAQDEKSAILLREKEDC--ALQLLTAQNRFLEERKEIMEKFAKEQDAFLLDTQEKhshelqllqqgh 661
Cdd:COG1196 280 ELEL---------EEAQAEEYELLAELARLeqDIARLEERRRELEERLEELEEELAELEEELEELEEE------------ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 662 qqqLLALRMELEtkhhsELTEQLASLESKQQALLEthvakmqvkhdaEISALEKRHLSNLDELESCYVADIQTIRDEHKK 741
Cdd:COG1196 339 ---LEELEEELE-----EAEEELEEAEAELAEAEE------------ALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 742 ALELLRAELEEQLQKKDschREILTQELEKLKLKHAEELQSVRNSLRVKMSAQHTESgkgpAADLQGAHQKAPAMALHNE 821
Cdd:COG1196 399 AAQLEELEEAEEALLER---LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA----ELEEEEEALLELLAELLEE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 822 GHQLEEDGDAALGGADTEDLQHHAEPREREGPHtvEMQTSQTELAKPQELQASQDQGAQVRDQVFLLSRELEECRGELEQ 901
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYE--GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 902 LQQRRERENQEGAtlicmlrADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDTSGAQLA 981
Cdd:COG1196 550 NIVVEDDEVAAAA-------IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 982 AAALGEMWPDEGLLDIDRTLPEGAETSSvceisshvcesffmspentqeceQPIRKVYQSLSTAVEGLLDMALDSSKQLE 1061
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVT-----------------------LEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1062 DARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLI 1141
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
650
....*....|....*..
gi 1958758595 1142 VELEDLRKQLQQASREL 1158
Cdd:COG1196 760 PDLEELERELERLEREI 776
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2307-2550 |
1.87e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2307 NQLCVALKHERAAKDNLQKElQIEASRCEALLAQEKGQLSEL---RKSLEAERSRSLELSEAL----QHERLLTE---QL 2376
Cdd:pfam17380 272 NQLLHIVQHQKAVSERQQQE-KFEKMEQERLRQEKEEKAREVerrRKLEEAEKARQAEMDRQAaiyaEQERMAMErerEL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2377 SRNAQEACARQDTQAQHallRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAV---- 2452
Cdd:pfam17380 351 ERIRQEERKRELERIRQ---EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEqira 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2453 ---DALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQR 2529
Cdd:pfam17380 428 eqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260
....*....|....*....|.
gi 1958758595 2530 DEHKIEQLQRLVRELRWKEEA 2550
Cdd:pfam17380 508 MIEEERKRKLLEKEMEERQKA 528
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
679-1249 |
1.94e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 679 ELTEQLASLESKQQALLETHVAKMQVKHDAEISALEKRHLSNLDELESCyVADIQTIRDEHKKALELLRAELEEQLQKKD 758
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEL-EAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 759 SCHREILTQELEKLKLKHAEE-LQSVRNSLRVKMSAQHTESGKGPAADLQGAHQKAPAMALHNEGHQLEEDGDAALGGAD 837
Cdd:COG1196 296 ELARLEQDIARLEERRRELEErLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 838 TEDLQHHAEPREREgphtvEMQTSQTELAKPQELQASQDQGAQVRDQvfllsrELEECRGELEQLQQRRERENQEGATLI 917
Cdd:COG1196 376 EAEEELEELAEELL-----EALRAAAELAAQLEELEEAEEALLERLE------RLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 918 CMLRADVDLAQSEGKALRDALRRLLDLFGETLKAAVTLKSRISERAGLLLDHEDAVDT----SGAQLAAAALGEMWPDEG 993
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyegfLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 994 LLDIDRTLPEGAETSSVCEISSHVCESFFmspENTQECEQPIRKVYQSLSTAVEGLLDMALDSSKQLEDARQLHRcVEKE 1073
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVV---EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA-IGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1074 FRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQ 1153
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1154 ASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRVLESELEDQLVQHRGC- 1232
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE-ALEEQLEAEREELLEELLEEEELLEEEALEELPEp 759
|
570 580
....*....|....*....|
gi 1958758595 1233 ---AQLAEEVTTLKQQLATL 1249
Cdd:COG1196 760 pdlEELERELERLEREIEAL 779
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1332-1547 |
1.94e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1332 ADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVvnsrnsEIEELKAIIEHLQENQEQLQKAKAEEIEQ 1411
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQA------ELEALQAEIDKLQAEIAEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1412 LHEVIEKLQSELSLMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLADHGhsQALEALQER 1491
Cdd:COG3883 88 LGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKL--AELEALKAE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758595 1492 LQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDA 1547
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
2250-2550 |
2.10e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2250 ENELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQ-LCVALKHERAAKDNLQKELQ 2328
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKrVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2329 iEASRCE-ALLAQEKGQLSELRKsleAERSRSLELSEALQHERLLTEqlSRNAQEAcaRQDTQAQHALLRKLKAEKARAL 2407
Cdd:PTZ00121 1174 -DAKKAEaARKAEEVRKAEELRK---AEDARKAEAARKAEEERKAEE--ARKAEDA--KKAEAVKKAEEAKKDAEEAKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2408 ELEAMLEKVQK-QAAHTQQQLEAQAQERCLELRREKEV--SGNLRSAVDALQTHKQELGCCLEREREKA-----AWLQAE 2479
Cdd:PTZ00121 1246 EEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELkkAEEKKKADEAKKAEEKKKADEAKKKAEEAkkadeAKKKAE 1325
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758595 2480 LEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKLRELELQRQRDEHKIEQLQRLVRELRWKEEA 2550
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1088-1422 |
2.11e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 46.81 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1088 QQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSV 1167
Cdd:pfam07888 40 LQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1168 LWNQKE--------------TFTNEAKEREAAL------QKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELED--- 1224
Cdd:pfam07888 120 LLAQRAahearireleedikTLTQRVLERETELermkerAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQElrn 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1225 -QLVQHRGCAQLAEEVTTLKQQLATLDKHlRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDSQCAK 1303
Cdd:pfam07888 200 sLAQRDTQVLQLQDTITTLTQKLTTAHRK-EAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQAR 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1304 LdeEVELLQEKLREKldgfnELVIKKDLA----DQQLLIQEEEIKH--LEETNENIQRQMAQLQEE-LEKQRRSTE---- 1372
Cdd:pfam07888 279 L--QAAQLTLQLADA-----SLALREGRArwaqERETLQQSAEADKdrIEKLSAELQRLEERLQEErMEREKLEVElgre 351
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958758595 1373 ---ELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1422
Cdd:pfam07888 352 kdcNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETV 404
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1304-1422 |
2.66e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.39 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1304 LDEEVELLQEKLREKLDGFNELVIKKDLADQQLLiqEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELE-------- 1375
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEE--EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLErelsears 455
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758595 1376 ----------VVNSRNSEIEELKAIIEHLQENQEQLQkakaEEIEQLHEVIEKLQSE 1422
Cdd:COG2433 456 eerreirkdrEISRLDREIERLERELEEERERIEELK----RKLERLKELWKLEHSG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1328-1507 |
2.92e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1328 KKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV---VNSRNSEIEELKAIIEHLQEN------- 1397
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDeidVASAEREIAELEAELERLDASsddlaal 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1398 QEQLQKAKAeEIEQLHEVIEKLQSELSLMGPTVHEMSDLPPgSLHTELSclQAEGMGGQALHNELQAaqaakgAFGQLLA 1477
Cdd:COG4913 691 EEQLEELEA-ELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLE--AAEDLARLELRALLEE------RFAAALG 760
|
170 180 190
....*....|....*....|....*....|
gi 1958758595 1478 DHGHSQALEALQERLQDAEAAAARHLTELE 1507
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNRAEEELE 790
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1026-1425 |
3.76e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1026 ENTQECEQPIRKVYQSLSTAVEGLLDM--ALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKD 1103
Cdd:TIGR00618 438 RYAELCAAAITCTAQCEKLEKIHLQESaqSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1104 RLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLkeenSVLWNQKETFTNEAKERE 1183
Cdd:TIGR00618 518 QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL----TQCDNRSKEDIPNLQNIT 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1184 AALQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRgcaqLAEEVTTLKQQLATLDK-----HLRSQRQ 1258
Cdd:TIGR00618 594 VRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQE----LALKLTALHALQLTLTQervreHALSIRV 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1259 FMDEQAAERehereefQQEIKWLEGQLRQATRPRPPGPRDSQCAKLDEEVELLQEKLREKldgfnelvIKKDLADQQLLI 1338
Cdd:TIGR00618 670 LPKELLASR-------QLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE--------IENASSSLGSDL 734
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1339 QEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEK 1418
Cdd:TIGR00618 735 AAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPS 814
|
....*..
gi 1958758595 1419 LQSELSL 1425
Cdd:TIGR00618 815 DEDILNL 821
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2106-2392 |
3.77e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2106 AEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQRE------HQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAA 2179
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEqlrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2180 SDVRKRLMVEQGAVQDLKSELHACKQENTNLLESLDKVQQEvlrlryghvtwsysgtssASAGRAVLDGKENELKVVLEE 2259
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE------------------LKALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2260 LEcERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELqieasrcEALLA 2339
Cdd:TIGR02168 819 AA-NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL-------EEALA 890
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958758595 2340 QEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLSRNAQEACARQDTQAQ 2392
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| CorA |
pfam01544 |
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx ... |
1275-1424 |
4.11e-04 |
|
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell.
Pssm-ID: 460246 [Multi-domain] Cd Length: 292 Bit Score: 45.00 E-value: 4.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1275 QQEIKWLEgQLRQATRPRPPGPRDSQcakldeevELLQEKLREKLDGFNELVikkDLADQQLLIQEEEIkhLEETNENIQ 1354
Cdd:pfam01544 85 HEPLPALD-EVRKRLTLLGGGPLDPG--------DLLYRLLDEIVDRFLELL---EKLEDELDELEDEL--EDETNNELL 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758595 1355 RQMAQLQEELEK-------QRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLqkakAEEIEQLHEVIEKLQSELS 1424
Cdd:pfam01544 151 RELAALRRSLVYlrrsllpQRDVLNRLLRREDDPLLDDEQKEYLRDLLDRLERL----LEDLDALRERLRSLQDEYS 223
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1127-1419 |
5.31e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 45.72 E-value: 5.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1127 QEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWN----QKETFTNEAKEREAALQKEVESLTRDQWEsrk 1202
Cdd:COG5185 267 LEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKAteslEEQLAAAEAEQELEESKRETETGIQNLTA--- 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1203 QSEKDRATLLSQMRVLESELEdQLVQHRGCAQLAEEVTTLKQQLATLDKHL----RSQRQFMDEQAAEREHEREEFQQEI 1278
Cdd:COG5185 344 EIEQGQESLTENLEAIKEEIE-NIVGEVELSKSSEELDSFKDTIESTKESLdeipQNQRGYAQEILATLEDTLKAADRQI 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1279 KWLEGQLRQATRPRPPGPRdsqcaKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIkhLEETNENIQRQMA 1358
Cdd:COG5185 423 EELQRQIEQATSSNEEVSK-----LLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKED--LNEELTQIESRVS 495
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758595 1359 QLQEELEKQRRSTEelEVVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKL 1419
Cdd:COG5185 496 TLKATLEKLRAKLE--RQLEGVRSKLDQVAESLKDFMRARGYAHILALENLIPASELIQAS 554
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2284-2538 |
7.56e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 7.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2284 REGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQI---EASRCEALLAQEKGQLSELRKSLEAERSRSL 2360
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2361 ELSEALQH--ERLLTEQLSRNAQEA-CARQDTQAQHALLRKLKAE----KARALELEAMLEKVQkqaahtqqqleaqaqe 2433
Cdd:TIGR02169 762 ELEARIEEleEDLHKLEEALNDLEArLSHSRIPEIQAELSKLEEEvsriEARLREIEQKLNRLT---------------- 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2434 rcLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKrkw 2513
Cdd:TIGR02169 826 --LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE--- 900
|
250 260
....*....|....*....|....*
gi 1958758595 2514 qrVKEKLRELELQRQRDEHKIEQLQ 2538
Cdd:TIGR02169 901 --LERKIEELEAQIEKKRKRLSELK 923
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-688 |
7.91e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 7.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 224 DWESERELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIRKLQE--DLRSE 301
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREEleTLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 302 HCQYLQDLELRFREKEKAKElELETLQASYEDLkaqsQEEIRHLWSQLESMKTNREeqngswepllAQASHLEELQhlrs 381
Cdd:PRK02224 260 IEDLRETIAETEREREELAE-EVRDLRERLEEL----EEERDDLLAEAGLDDADAE----------AVEARREELE---- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 382 dfaqqqqQERAQHESELEHLRVYFEKKLNDAEkTYQEDLTVFQQRLQEAREESLESAEISSSCmfpeETSGRERKEPPDP 461
Cdd:PRK02224 321 -------DRDEELRDRLEECRVAAQAHNEEAE-SLREDADDLEERAEELREEAAELESELEEA----REAVEDRREEIEE 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 462 LDLQLEQPKAQgslIEDYQEKLSNAEEKIELM---KQEFQKKEAEWELSREDLKRDAEEklASMFLELREKAESEKlsii 538
Cdd:PRK02224 389 LEEEIEELRER---FGDAPVDLGNAEDFLEELreeRDELREREAELEATLRTARERVEE--AEALLEAGKCPECGQ---- 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 539 nrfELRESSMRHLQDQQAAQISDLERSLREQQGHLRQLEQELTRDEVLlcsqcgkepsvAQDEKSAILLREKEDCALQLL 618
Cdd:PRK02224 460 ---PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-----------VEAEDRIERLEERREDLEELI 525
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 619 TAQNRFLEERKEIMEKFAKEQDAflLDTQEKHSHELQLLQQGHQQQLLALRMELETKhHSELTEQLASLE 688
Cdd:PRK02224 526 AERRETIEEKRERAEELRERAAE--LEAEAEEKREAAAEAEEEAEEAREEVAELNSK-LAELKERIESLE 592
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1055-1549 |
8.23e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1055 DSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKE 1134
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1135 ESEQQLIVELEDLRKQLQQASRELLTLKEEnsvLWNQKETFtNEAKEREAALQKEVESL--TRDQWESRKQSEKDRATLL 1212
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQE---LYDLKEEY-DRVEKELSKLQRELAEAeaQARASEERVRGGRAVEEVL 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1213 SQMRVLESELEDQLVQHRGCAQLAEEVT--------------TLKQQLATLDKHLRSQRQFM------DEQAAEREHERE 1272
Cdd:TIGR02169 517 KASIQGVHGTVAQLGSVGERYATAIEVAagnrlnnvvveddaVAKEAIELLKRRKAGRATFLplnkmrDERRDLSILSED 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1273 --------------EFQQEIKW----------------LEGQLRQATRP--------------RPPGPRDSQCAKLDEEV 1308
Cdd:TIGR02169 597 gvigfavdlvefdpKYEPAFKYvfgdtlvvedieaarrLMGKYRMVTLEgelfeksgamtggsRAPRGGILFSRSEPAEL 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1309 ELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEV-VNSRNSEIEEL 1387
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEdLSSLEQEIENV 756
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1388 KAIIEHLQENQEQLQKAKAEEIEQL--------HEVIEKLQSELSLMGPTVHEMS------DLPPGSLHTELSCLQAEGM 1453
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALndlearlsHSRIPEIQAELSKLEEEVSRIEarlreiEQKLNRLTLEKEYLEKEIQ 836
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1454 GGQALHNELQAAQAAKGAfgQLLADHGHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKA 1533
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEK--EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
570
....*....|....*.
gi 1958758595 1534 KEAIIVQRDLEIDAVN 1549
Cdd:TIGR02169 915 KRKRLSELKAKLEALE 930
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2280-2545 |
9.95e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 9.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2280 RHLQREGQSSRALEELKISLEKQlaqnnQLCVALKHERAAkdnlqkELQIEASRCEALLAQEKGQLSELRKSLEAERSRS 2359
Cdd:PRK04863 345 RQQEKIERYQADLEELEERLEEQ-----NEVVEEADEQQE------ENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2360 LELSEALQ----------------------------HERLLTEQLSRNAQEACARQDTQAQHA----LLRKLKAEKAR-- 2405
Cdd:PRK04863 414 IQYQQAVQalerakqlcglpdltadnaedwleefqaKEQEATEELLSLEQKLSVAQAAHSQFEqayqLVRKIAGEVSRse 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2406 ----ALELEAMLEKVQKQAAHTQQQLEAQAqerclELRREKEvsgNLRSAVDALQTHKQELGCCLEREREKAAwLQAELE 2481
Cdd:PRK04863 494 awdvARELLRRLREQRHLAEQLQQLRMRLS-----ELEQRLR---QQQRAERLLAEFCKRLGKNLDDEDELEQ-LQEELE 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2482 QLSARVKQQEARQDEKRMDRRSSREDLDKR---------KWQRVKEKLRELELQ-------RQRDEHKIEQLQRLVRELR 2545
Cdd:PRK04863 565 ARLESLSESVSEARERRMALRQQLEQLQARiqrlaarapAWLAAQDALARLREQsgeefedSQDVTEYMQQLLERERELT 644
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1120-1374 |
1.02e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.90 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1120 KVEKADLQEAL---GKKEESEQqlivELEDLRKQLQQASRELLTLKEEnsvLWNQKETFTNEAKEREAAL-QKEVESLTR 1195
Cdd:PRK11281 59 KLVQQDLEQTLallDKIDRQKE----ETEQLKQQLAQAPAKLRQAQAE---LEALKDDNDEETRETLSTLsLRQLESRLA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1196 DQWESRKQSEKDRATLLSQMRVLESELEdqlvqhRGCAQLAEEVTTLkQQLATLDKHLRsqrqfmDEQAAEREHEREEFQ 1275
Cdd:PRK11281 132 QTLDQLQNAQNDLAEYNSQLVSLQTQPE------RAQAALYANSQRL-QQIRNLLKGGK------VGGKALRPSQRVLLQ 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1276 QEIKWLEGQLRQATrprppgprdsqcaKLDEEVELLQEKLREKLDgfnELVIKKDLADQQLLIQEEEI--KHLEETneni 1353
Cdd:PRK11281 199 AEQALLNAQNDLQR-------------KSLEGNTQLQDLLQKQRD---YLTARIQRLEHQLQLLQEAInsKRLTLS---- 258
|
250 260
....*....|....*....|.
gi 1958758595 1354 QRQMAQLQEELEKQRRSTEEL 1374
Cdd:PRK11281 259 EKTVQEAQSQDEAARIQANPL 279
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
188-912 |
1.10e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 188 EKEEMALRNEQETAELKEKFRSEMEKTVQMMETLKQDWESERELCLETLRKELsakhqseMEGLQNQFQKELSEQKAELE 267
Cdd:TIGR00618 153 EFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQL-------LTLCTPCMPDTYHERKQVLE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 268 KIFQAKHEAEVSLKNLEAQHQAAIRKLQEDLRSEH-CQYLQDLELRFREKEKAKELELETLQASYEDLK--------AQS 338
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQlLKQLRARIEELRAQEAVLEETQERINRARKAAPlaahikavTQI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 339 QEEIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHESELEhLRVYFEKKLNDAE--KTY 416
Cdd:TIGR00618 306 EQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATS-IREISCQQHTLTQhiHTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 417 QEDLTVFQQRLQEAREESLesaeissscmfpeetsgRERKEPPDPLDLQLEQPKAQGSLIedYQEKLSNAEEKIELMKQE 496
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELD-----------------ILQREQATIDTRTSAFRDLQGQLA--HAKKQQELQQRYAELCAA 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 497 FQKKEAEWELSREDLKRDAEEKLasmflelreKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQGHLRQL 576
Cdd:TIGR00618 446 AITCTAQCEKLEKIHLQESAQSL---------KEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPA 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 577 EQELTRDEVLLCSQCGKEPSVAQDEKS--------------AILLREKEDCALQLLTAQNRFLEERKEIMEKFAKEQDAF 642
Cdd:TIGR00618 517 RQDIDNPGPLTRRMQRGEQTYAQLETSeedvyhqltserkqRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 643 LLDTQEKHSHELQLLQQGHQQQLlalrmELETKHHSELTEQLASLESKQQALLETHVAKMQV---KHDAEISALekrhLS 719
Cdd:TIGR00618 597 QDLTEKLSEAEDMLACEQHALLR-----KLQPEQDLQDVRLHLQQCSQELALKLTALHALQLtltQERVREHAL----SI 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 720 NLDELESCYVADIQTIRDEHKKALELLRAELeeqLQKKDSCHREILTQELEKLKlkHAEELQSVRNSLRVKMSAQHTESG 799
Cdd:TIGR00618 668 RVLPKELLASRQLALQKMQSEKEQLTYWKEM---LAQCQTLLRELETHIEEYDR--EFNEIENASSSLGSDLAAREDALN 742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 800 KGPAADLQGAHQKAPAMALHNEGHQLEEDGDAALGgADTEDLQHHAEPREREGPH------TVEMQTSQTELAKPQELQA 873
Cdd:TIGR00618 743 QSLKELMHQARTVLKARTEAHFNNNEEVTAALQTG-AELSHLAAEIQFFNRLREEdthllkTLEAEIGQEIPSDEDILNL 821
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 1958758595 874 SQDQGAQVRDQVFLLSRE--------------LEECRGELEQLQQRRERENQE 912
Cdd:TIGR00618 822 QCETLVQEEEQFLSRLEEksatlgeithqllkYEECSKQLAQLTQEQAKIIQL 874
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2049-2421 |
1.10e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2049 EVFAREQENAELQPRPYSSDLGDYNSLVKKLEKVIQEQGDLQKVREHAcLPDRSSLLAEIQALRAQLRMTHLQNQekLQQ 2128
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL-REELEKLEKLLQLLPLYQELEALEAE--LAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2129 LCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSELHACKQENT 2208
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2209 NLLESLDKVQQEVLRLRYGHVTWSYSGTSSASAGRAVLDGKENELK------------------VVLEELECERGKGQVL 2270
Cdd:COG4717 224 ELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLsliltiagvlflvlgllaLLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2271 QAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQL---CVALKHERAAKDNLQKELQIEAS--RCEALLAQEK-GQ 2344
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELldrIEELQELLREAEELEEELQLEELeqEIAALLAEAGvED 383
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758595 2345 LSELRKSLEAERsrslELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAA 2421
Cdd:COG4717 384 EEELRAALEQAE----EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELA 456
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1308-1531 |
1.29e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1308 VELLQEKLREKLDGFNELVIKKDLAD---------QQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVn 1378
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEEKDlherlngleSELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETL- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1379 srNSEIEELKAIIEHLQENQEQLqkakAEEIEQLHEVIEKLQSELSLMGPTVhEMSDLPPGSLHTELSCLQAEgmgGQAL 1458
Cdd:PRK02224 257 --EAEIEDLRETIAETEREREEL----AEEVRDLRERLEELEEERDDLLAEA-GLDDADAEAVEARREELEDR---DEEL 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758595 1459 HNELQAAQAAKGAFGQLLadHGHSQALEALQERLQDAEAAAARHLTELEHC---VALRQAEVEAMASRIQEFEATL 1531
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEA--ESLREDADDLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIEELRERF 400
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2252-2544 |
1.46e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2252 ELKVVLEELECERGKGQVLQAQQEEQQLRHLQREGQSSRALEELKISLEKQLAQNNQLCVALKHERAAKDNLQKELQiea 2331
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE--- 792
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2332 sRCEALLAQEKGQLSELRKSLEAERSRSLELSEALQHerlLTEQLSRNAQEAcarQDTQAQHALLRKLKAEKARALE-LE 2410
Cdd:TIGR02168 793 -QLKEELKALREALDELRAELTLLNEEAANLRERLES---LERRIAATERRL---EDLEEQIEELSEDIESLAAEIEeLE 865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2411 AMLEKVQKQAAHTQQQLEAQAQERcLELRREKEvsgNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQ 2490
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEAL-ALLRSELE---ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1958758595 2491 EARQDEKRMDrrssredldkrKWQRVKEKLRELELQRQRDEHKIEQLQRLVREL 2544
Cdd:TIGR02168 942 QERLSEEYSL-----------TLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1302-1422 |
1.67e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1302 AKLDEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQ---------LQEELEKQRRSTE 1372
Cdd:COG1579 27 KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNvrnnkeyeaLQKEIESLKRRIS 106
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758595 1373 ELE--------VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1422
Cdd:COG1579 107 DLEdeilelmeRIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
286-586 |
1.71e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 286 QHQAAIRKLQEdlrSEHCQYLQDLELRFREKEKAKELELETLQASYEDLKAQSQEEIRHLWSQLESMKTNREEQNGSwep 365
Cdd:pfam17380 279 QHQKAVSERQQ---QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELER--- 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 366 lLAQASHLEELQHLRS-----DFAQQQQQERAQHESELEHLRVYFE----KKLNDAEKTYQEDLTVFQQRLQEAREESLE 436
Cdd:pfam17380 353 -IRQEERKRELERIRQeeiamEISRMRELERLQMERQQKNERVRQEleaaRKVKILEEERQRKIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 437 SAEISSSCMFPEETSGRERkeppdpldLQLEQPKAQGSLIEDYQEKLSNAEEKIELMKQEFQKKEAEwELSREDLKRDAE 516
Cdd:pfam17380 432 ARQREVRRLEEERAREMER--------VRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE-EQRRKILEKELE 502
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 517 EKLASMFLELREKAESEKLSIINRFELRESSMRHLQDQQAAQISDLERSLREQQgHLRQLEQELTRDEVL 586
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQE-QMRKATEERSRLEAM 571
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2394-2550 |
1.73e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2394 ALLRKLKAEKARALELEAMLEKVQKQAAHtqQQLEAQAQERCLELRREKEVSGNLRSAVDALQ-THKQELgccLEREREK 2472
Cdd:COG4913 225 EAADALVEHFDDLERAHEALEDAREQIEL--LEPIRELAERYAAARERLAELEYLRAALRLWFaQRRLEL---LEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2473 aawLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRV---KEKLRELELQRQRDEHKIEQLQRLVRELRWKEE 2549
Cdd:COG4913 300 ---LRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLeqlEREIERLERELEERERRRARLEALLAALGLPLP 376
|
.
gi 1958758595 2550 A 2550
Cdd:COG4913 377 A 377
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2321-2545 |
1.80e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2321 DNLQKELQIEASRCEAL---LAQEKGQLSELRKSLEAERSRSLELSEALQHERLLTEQLsRNAQEACARQDTQAQHALLR 2397
Cdd:TIGR02168 680 EELEEKIEELEEKIAELekaLAELRKELEELEEELEQLRKELEELSRQISALRKDLARL-EAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2398 kLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQ 2477
Cdd:TIGR02168 759 -LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2478 AELEQLSARVKQQEARQDEKRMDRRSSREDLDK--RKWQRVKEKLRELELQRQRDEHKIEQLQRLVRELR 2545
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEEleSELEALLNERASLEEALALLRSELEELSEELRELE 907
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
194-521 |
1.82e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 194 LRNEQETAELKEKFRSEMEKTvQMMETLKQDWESERELclETLRKELSAKhqsemeglqnqfQKELSEQKAELEKIFQAK 273
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREY-EGYELLKEKEALERQK--EAIERQLASL------------EEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 274 HEAEVSLKNLEAQHQA----AIRKLQEDLRSEHCQYLQdlelrFREKEKAKELELETLQASyedlKAQSQEEIRHLWSQL 349
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDlgeeEQLRVKEKIGELEAEIAS-----LERSIAEKERELEDAEER----LAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 350 ESMKTNREEQNGSWEPLLAQASHL-EELQHLRSDFAQQQQQERAQHEsELEHLRVYFEkKLNDAEKTYQEDLTVFQQRLQ 428
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAELkEELEDLRAELEEVDKEFAETRD-ELKDYREKLE-KLKREINELKRELDRLQEELQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 429 EAREEsLESAEISSSCMFPEETSGRERKEppdplDLQLEQPKAQGSLiEDYQEKLSNAEEKIELMKQEFQKKEAEwelsR 508
Cdd:TIGR02169 417 RLSEE-LADLNAAIAGIEAKINELEEEKE-----DKALEIKKQEWKL-EQLAADLSKYEQELYDLKEEYDRVEKE----L 485
|
330
....*....|...
gi 1958758595 509 EDLKRDAEEKLAS 521
Cdd:TIGR02169 486 SKLQRELAEAEAQ 498
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1302-1422 |
2.00e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.08 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1302 AKLDEEVELLQE---KLREKLDGFN-ELVIKKDLA------DQQLL-IQEEEIKHLEETNENIQRQMAQLQEELEkqrrs 1370
Cdd:smart00787 161 KLLMKELELLNSikpKLRDRKDALEeELRQLKQLEdeledcDPTELdRAKEKLKKLLQEIMIKVKKLEELEEELQ----- 235
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1958758595 1371 teELE-VVNSRNSEIEELKAIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1422
Cdd:smart00787 236 --ELEsKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1026-1408 |
2.11e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1026 ENTQECEQPIRKVYQSLSTAVEglLDMALDSSKQLEDARQLHRCVEK--EFRHRDEEMAQAVQKQQELLERLREESAAKD 1103
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADE--LKKAAAAKKKADEAKKKAEEKKKadEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1104 rlALELHTAEGLLEgfKVEKADLQEALGKKEESEQQLIVEL----------EDLRKQLQQASRELLTLKEENsvlwNQKE 1173
Cdd:PTZ00121 1466 --AEEAKKADEAKK--KAEEAKKADEAKKKAEEAKKKADEAkkaaeakkkaDEAKKAEEAKKADEAKKAEEA----KKAD 1537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1174 TFTNEAKEREAALQKEVESLTRDQwESRKQSEKDRATLLSQMRVLESELEDQLVQHR--GCAQLAEEVTTLKQQLATLDK 1251
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAE-EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARieEVMKLYEEEKKMKAEEAKKAE 1616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1252 HLRSQRQFM---DEQAAEREHEREEFQQEIKWLEgQLRQA-----TRPRPPGPRDSQCAKLDEEVELLQEKLREKLDGFN 1323
Cdd:PTZ00121 1617 EAKIKAEELkkaEEEKKKVEQLKKKEAEEKKKAE-ELKKAeeenkIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1324 ELVIKKDLADQQLLIQEEEIKHLEE---TNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQ 1400
Cdd:PTZ00121 1696 KEAEEAKKAEELKKKEAEEKKKAEElkkAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
|
....*...
gi 1958758595 1401 LQKAKAEE 1408
Cdd:PTZ00121 1776 EKEAVIEE 1783
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1071-1422 |
2.25e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1071 EKEFRHRDEEMAQAVQKQQELLERLREEsaakdrlaleLHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQ 1150
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQ----------LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDK 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1151 LQQASRELLTLKEEnsvlwnQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRatllsqmRVLESELEDQLvqhr 1230
Cdd:pfam12128 669 KNKALAERKDSANE------RLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYW-------QVVEGALDAQL---- 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1231 gcAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPR---------DSQC 1301
Cdd:pfam12128 732 --ALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwyqetwLQRR 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1302 AKLDEEVELLQEKLREkldgfnelvIKKDLADQQlliqeeeikhlEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRN 1381
Cdd:pfam12128 810 PRLATQLSNIERAISE---------LQQQLARLI-----------ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM 869
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1958758595 1382 SEIEELkaiieHLQENQEQLQKAKAEEIEQLHEVIEKLQSE 1422
Cdd:pfam12128 870 SKLATL-----KEDANSEQAQGSIGERLAQLEDLKLKRDYL 905
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1093-1290 |
2.46e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1093 ERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQK 1172
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1173 ETFTNEAKEREAALQK-----EVESLTRDqwESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQLA 1247
Cdd:COG4942 100 EAQKEELAELLRALYRlgrqpPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958758595 1248 TLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATR 1290
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
179-279 |
2.64e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 179 ELMREQHAREKEEMALRNEQETA--ELKEKFRSEMEKTVQMMETLKQDWESERELCLE--TLRKELSAKHqsemeGLQNQ 254
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDEAsfERLAELRDELAELEEELEALKARWEAEKELIEEiqELKEELEQRY-----GKIPE 489
|
90 100
....*....|....*....|....*
gi 1958758595 255 FQKELSEQKAELEKIFQAKHEaEVS 279
Cdd:COG0542 490 LEKELAELEEELAELAPLLRE-EVT 513
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
198-345 |
2.80e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 42.56 E-value: 2.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 198 QETAELKEKFRSEMEKTVQMMETLKQDWESeRELCLETLRKELSAKHQSEMEGLQNQFQKELSEQKAELEKifQAKHEAE 277
Cdd:cd16269 149 EDREKLVEKYRQVPRKGVKAEEVLQEFLQS-KEAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLE--EQQRELE 225
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 278 VSLKNLEAQHQAAIRKLQEDLRSEHCQYLQDLE--LRFREKEKAKELELETLQASyedlkAQSQEEIRHL 345
Cdd:cd16269 226 QKLEDQERSYEEHLRQLKEKMEEERENLLKEQEraLESKLKEQEALLEEGFKEQA-----ELLQEEIRSL 290
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1327-1601 |
2.99e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1327 IKKDLADQQLLIQ----EEEIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNSRNSEIEELKAIIEHLQENQEQLQ 1402
Cdd:TIGR02168 218 LKAELRELELALLvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1403 KAKAEEIEQLHEVIEKLQSELSlMGPTVHEMSDLPPGSLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLadhghS 1482
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLE-ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-----E 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1483 QALEALQERLQDAEAAAArhltELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQRDLEIDAVNKWKVSHSVELEAL 1562
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958758595 1563 LLALAHFQHA-VEQQTSATPDEPPKLQQLLVQCARLSHQL 1601
Cdd:TIGR02168 448 ELEELQEELErLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
181-580 |
3.02e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 181 MR-EQHAREKEEMALRNEQETAELKEKFRSEMEKTVQMME----------TLKQDWESERE---LCLETLR-KELSAKHQ 245
Cdd:PRK04863 275 MRhANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARelaelneaesDLEQDYQAASDhlnLVQTALRqQEKIERYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 246 SEMEGL------QNQFQKELSEQKAELEKIFQAKHEAEVSLKNLEAQHQAAIrKLQEDLRSEHCQYLQDLElRFREKEKA 319
Cdd:PRK04863 355 ADLEELeerleeQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL-DVQQTRAIQYQQAVQALE-RAKQLCGL 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 320 KELELETLQASYEDLKAQSQE---EIRHLWSQLESMKTNREEQNGSWEPLLAQASHLEELQHLRSDFAQQQQQERAQHES 396
Cdd:PRK04863 433 PDLTADNAEDWLEEFQAKEQEateELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLA 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 397 E-LEHLRvyfeKKLNDAEKTYQEdltvfQQRLQEAREESlesaeissscmfpeetSGRERKEPPDPLDLQLEQpKAQGSL 475
Cdd:PRK04863 513 EqLQQLR----MRLSELEQRLRQ-----QQRAERLLAEF----------------CKRLGKNLDDEDELEQLQ-EELEAR 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 476 IEDYQEKLSNAEEKIELMKQEfqkkeaewelsREDLKRDAEE--KLASMFLELREKAEseklsiinrfELRESSMRHLQD 553
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQ-----------LEQLQARIQRlaARAPAWLAAQDALA----------RLREQSGEEFED 625
|
410 420 430
....*....|....*....|....*....|..
gi 1958758595 554 QQA-----AQISDLERSLREQQGHLRQLEQEL 580
Cdd:PRK04863 626 SQDvteymQQLLERERELTVERDELAARKQAL 657
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1058-1230 |
3.17e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1058 KQLEDARQLHRCVEkEFRHRDEEMAQAVQKQQEL---LERLREESAAKDRLALELHTAEGLLEGFKVEKADLQEALGKKE 1134
Cdd:COG4913 641 DALQERREALQRLA-EYSWDEIDVASAEREIAELeaeLERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLE 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1135 ESEQQLIVELEDLRKQLQQASRElltlkeensvlwNQKETFTNEAKEREAALQKEVESLTRDQWESRkqsekdRATLLSQ 1214
Cdd:COG4913 720 KELEQAEEELDELQDRLEAAEDL------------ARLELRALLEERFAAALGDAVERELRENLEER------IDALRAR 781
|
170
....*....|....*.
gi 1958758595 1215 MRVLESELEDQLVQHR 1230
Cdd:COG4913 782 LNRAEEELERAMRAFN 797
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1143-1367 |
3.31e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1143 ELEDLRKQ------LQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRATLLSQMR 1216
Cdd:COG4913 243 ALEDAREQiellepIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1217 VLESELEDQLVQHRGcaqlaEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRprppgp 1296
Cdd:COG4913 323 EELDELEAQIRGNGG-----DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA------ 391
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958758595 1297 rdsQCAKLDEEVELLQEKLREKLDGFNELviKKDLADQqlliqEEEIKHLEETNENIQRQMAQLQEELEKQ 1367
Cdd:COG4913 392 ---LLEALEEELEALEEALAEAEAALRDL--RRELREL-----EAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| BspD6I-like |
cd22316 |
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction ... |
1302-1422 |
3.33e-03 |
|
nicking endonuclease Nt.BspD6I and similar endonucleases; Heterodimeric type II restriction endonuclease nicking endonuclease BspD6I recognizes a pseudosymmetric DNA sequence (5'-GAGTC) and cuts both strands outside the recognition motif 4 nucleotides downstream. It forms the large subunit in a heterodimeric arrangement. This catalytic domain/subunit belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411720 Cd Length: 345 Bit Score: 42.67 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1302 AKLDEEVELLQEKLREKLDGFNELVIKKDLADqqlliqeeeIKHLEETNENIQRQMAQLQEELEKQRRSTEELEVVNS-- 1379
Cdd:cd22316 38 EKKVEVEEILSNVERKPIFFDSDDDYLEYLFN---------PALPPLDNDDKANLVLELLRIRLKERGILIKISSKPLlt 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1958758595 1380 ---RNSEIEELKAIIEHLQENQeqLQKAKAEEIEQLHEVIEKLQSE 1422
Cdd:cd22316 109 padLNIIRKELENKLKKLREKK--YAKRQAEDWEEILEYFDLIENR 152
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2292-2496 |
4.16e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2292 LEELKISLEK------QLAQNNQLcVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELRKSLEAERSRSLELSEA 2365
Cdd:COG3206 184 LPELRKELEEaeaaleEFRQKNGL-VDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2366 LQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKAralELEAMLEKVQKQAAHTQQQLEAQAQERCLELRREKEvs 2445
Cdd:COG3206 263 PVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIA---ALRAQLQQEAQRILASLEAELEALQAREASLQAQLA-- 337
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958758595 2446 gNLRSAVDALQTHKQELgccLEREREKAAwLQAELEQLSARvkQQEARQDE 2496
Cdd:COG3206 338 -QLEARLAELPELEAEL---RRLEREVEV-ARELYESLLQR--LEEARLAE 381
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
1089-1412 |
4.47e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 42.52 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1089 QELLERLRE---ESAAKDRLALE--LHTAEGLLEGFKVEKAdlqealgKKEESE-QQLIVELEDLRKQLQQASRELLTLK 1162
Cdd:PRK04778 63 EEKFEEWRQkwdEIVTNSLPDIEeqLFEAEELNDKFRFRKA-------KHEINEiESLLDLIEEDIEQILEELQELLESE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1163 EENSvlwnqketftneakereaalqKEVESLTRDQWESRKQSEKDRATLLSQMRVLE---SELEDQLVQHrgcAQLAEE- 1238
Cdd:PRK04778 136 EKNR---------------------EEVEQLKDLYRELRKSLLANRFSFGPALDELEkqlENLEEEFSQF---VELTESg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1239 -VTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQATRPRPPGPRDsqcaKLDEEVELLQEKLRE 1317
Cdd:PRK04778 192 dYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHL----DIEKEIQDLKEQIDE 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1318 KLDgfnelvikkdladqqlLIQEEEIKHLEETNENIQRQMAQLQEELEKqrrsteELEVVNSRNSEIEELKAIIEHLQEN 1397
Cdd:PRK04778 268 NLA----------------LLEELDLDEAEEKNEEIQERIDQLYDILER------EVKARKYVEKNSDTLPDFLEHAKEQ 325
|
330
....*....|....*
gi 1958758595 1398 QEQLQkakaEEIEQL 1412
Cdd:PRK04778 326 NKELK----EEIDRV 336
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1053-1423 |
4.53e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1053 ALDSSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAK---DRLALELHTAEGLLEGFKVEKAdlqEA 1129
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKaeeKKKADELKKAEELKKAEEKKKA---EE 1568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1130 LGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQSEKDRa 1209
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK- 1647
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1210 tllsQMRVLESELEDQLVQHRGCAQLAEEVTTLKQQL--ATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKWLEGQLRQ 1287
Cdd:PTZ00121 1648 ----KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAkkAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1288 ATRPRPPgpRDSQCAKLDEEVELLQEKLREKLDGFNELvikkdladqQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQ 1367
Cdd:PTZ00121 1724 AEEENKI--KAEEAKKEAEEDKKKAEEAKKDEEEKKKI---------AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958758595 1368 RRSTEELEVVNSRNSEIeelkaIIEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1423
Cdd:PTZ00121 1793 RMEVDKKIKDIFDNFAN-----IIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQL 1843
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1305-1422 |
4.55e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1305 DEEVELLQEKLREKLDGFNELVIKKDLADQQLLIQEEEIKHLEetneniqRQMAQLQEELEKqrrsteELEVVNSRNSEI 1384
Cdd:PRK12704 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE-------KRLLQKEENLDR------KLELLEKREEEL 112
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958758595 1385 EELKAIIEHLQEN----QEQLQKAKAEEIEQLhEVIEKLQSE 1422
Cdd:PRK12704 113 EKKEKELEQKQQElekkEEELEELIEEQLQEL-ERISGLTAE 153
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
232-499 |
5.26e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 42.47 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 232 CLETLRKELSA-KHQSEMEGLQNQFQKELSEQ---KAELEKIFQAKHEAEV-----SLKNLEAQHQAAIRKLQEDLRSEH 302
Cdd:PTZ00341 294 CRKIMNSDISSfKHINELKSLEHRAAKAAEAEmkkRAEKPKKKKSKRRGWLccgggDIETVEPQQEEPVQDVGEHQINEY 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 303 CQYLQDLELRFREK--------EKAKELELETLQASYED----LKAQSQEEIRHL-WSQLESMKTNREEQNG-SWEPLLA 368
Cdd:PTZ00341 374 GDILPSLKASINNSainyydavKDGKYLDDDSSDALYTDedllFDLEKQKYMDMLdGSEDESVEDNEEEHSGdANEEELS 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 369 QASHLEElQHLRSDFAQQQQQERAQHESELEhlrVYFEKKLNDaektYQEDLTVFQQRLQEAREESLESAEIssscmfpe 448
Cdd:PTZ00341 454 VDEHVEE-HNADDSGEQQSDDESGEHQSVNE---IVEEQSVNE----HVEEPTVADIVEQETVDEHVEEPAV-------- 517
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1958758595 449 etsgrERKEPPDPLDLQLEQPKAQGSLIedyQEKLSNAEEKIELMKQEFQK 499
Cdd:PTZ00341 518 -----DENEEQQTADEHVEEPTIAEEHV---EEEISTAEEHIEEPASDVQQ 560
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
1072-1228 |
5.30e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 41.67 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1072 KEFRHRDEEMAQAVQKQQELLERLREESAAKDrlaLELHTAEGL-LEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQ 1150
Cdd:pfam09787 7 QELADYKQKAARILQSKEKLIASLKEGSGVEG---LDSSTALTLeLEELRQERDLLREEIQKLRGQIQQLRTELQELEAQ 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958758595 1151 LQQasrELLTLKEENSVLwnqKETFTNEAKEREAAlQKEVESLTRDQWESRKQSEKDRATLLSQMRVLESELEDQLVQ 1228
Cdd:pfam09787 84 QQE---EAESSREQLQEL---EEQLATERSARREA-EAELERLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQ 154
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1056-1373 |
5.53e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.58 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1056 SSKQLEDARQLHRCVEKEFRHRDEEMAQAVQKqqelLERLREEsaaKDRLALELHTAEgllegFKVEKADLQEALGKKEE 1135
Cdd:PLN02939 126 SDFQLEDLVGMIQNAEKNILLLNQARLQALED----LEKILTE---KEALQGKINILE-----MRLSETDARIKLAAQEK 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1136 SEQQLIVE-LEDLRKQLQQA-----------SRELLTLKEENSVLWNQKEtftneakereaALQKEVESLTRDQwESRKQ 1203
Cdd:PLN02939 194 IHVEILEEqLEKLRNELLIRgateglcvhslSKELDVLKEENMLLKDDIQ-----------FLKAELIEVAETE-ERVFK 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1204 SEKDRATLLSQMRVLESEL----EDQL-VQHRGCAQLAEEVTTLKQQLATLDKHLrsqrqfmdEQAAEREHEREEFQQEI 1278
Cdd:PLN02939 262 LEKERSLLDASLRELESKFivaqEDVSkLSPLQYDCWWEKVENLQDLLDRATNQV--------EKAALVLDQNQDLRDKV 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1279 KWLEGQLRQAtrprppgprdsQCAKLD-EEVELLQEKLREKLDGFnelvikkDLADQQLLIQeeeIKHLEETNENIQRQM 1357
Cdd:PLN02939 334 DKLEASLKEA-----------NVSKFSsYKVELLQQKLKLLEERL-------QASDHEIHSY---IQLYQESIKEFQDTL 392
|
330
....*....|....*.
gi 1958758595 1358 AQLQEELEKqrRSTEE 1373
Cdd:PLN02939 393 SKLKEESKK--RSLEH 406
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1102-1424 |
6.25e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1102 KDRLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRKQLQQASRELLTLKEENSvlwnQKETFTNEAKE 1181
Cdd:TIGR04523 119 KNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKL----NIQKNIDKIKN 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1182 REAALQKEVESLtrdqwesrKQSEKDRATLLSQMRVLE---SELEDQLVQ-HRGCAQLAEEVTTLKQQLATL-DKHLRSQ 1256
Cdd:TIGR04523 195 KLLKLELLLSNL--------KKKIQKNKSLESQISELKkqnNQLKDNIEKkQQEINEKTTEISNTQTQLNQLkDEQNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1257 RQFMDEQAAEREHERE---------EFQQEIKWLEGQLRQATRPRppgpRDSQCAKLDEEVELLQEKLREKLDGFNELvi 1327
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKikelekqlnQLKSEISDLNNQKEQDWNKE----LKSELKNQEKKLEEIQNQISQNNKIISQL-- 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1328 kkdlaDQQLLIQEEEIKHLEETNENIQRQMAQLQEELEKQRRSTEE-LEVVNSRNSEIEELKAIIEHlQENQEQLQKAKA 1406
Cdd:TIGR04523 341 -----NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSyKQEIKNLESQINDLESKIQN-QEKLNQQKDEQI 414
|
330
....*....|....*...
gi 1958758595 1407 EEIEQLHEVIEKLQSELS 1424
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLK 432
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1346-1541 |
6.33e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1346 LEETNENIQR----------QMAQLQEELEKQRRS---TEELEVV---------NSRNSEIEELKAIIEHLQENQEQLQK 1403
Cdd:COG1196 181 LEATEENLERledilgelerQLEPLERQAEKAERYrelKEELKELeaellllklRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1404 AKAE---EIEQLHEVIEKLQSELSLMGPTVHEmsdlppgsLHTELSCLQAEGMGGQALHNELQAAQAAKGAFGQLLADH- 1479
Cdd:COG1196 261 ELAEleaELEELRLELEELELELEEAQAEEYE--------LLAELARLEQDIARLEERRRELEERLEELEEELAELEEEl 332
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958758595 1480 -GHSQALEALQERLQDAEAAAARHLTELEHCVALRQAEVEAMASRIQEFEATLKAKEAIIVQR 1541
Cdd:COG1196 333 eELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1060-1425 |
7.56e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1060 LEDARQLHRCVEKEFRHRDEEMAQAVQKQQELLERLREESAAK-DRLALELHTAEGLLEGFKVEKADLQEALGKK-EESE 1137
Cdd:pfam15921 129 MADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQiEQLRKMMLSHEGVLQEIRSILVDFEEASGKKiYEHD 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1138 QQLIVELEDLRKQLQQASRELLT----LKEENSVLWNQKETFTNEAKER-EAALQK--------------EVESLTRDQW 1198
Cdd:pfam15921 209 SMSTMHFRSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKSESQNKiELLLQQhqdrieqlisehevEITGLTEKAS 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1199 ESRKQSEkdraTLLSQMRVLESELEDQLVQH-RGCAQLAEEVTTLKQQLATLDK-------HLRSQRQFMDEQAAEREHE 1270
Cdd:pfam15921 289 SARSQAN----SIQSQLEIIQEQARNQNSMYmRQLSDLESTVSQLRSELREAKRmyedkieELEKQLVLANSELTEARTE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1271 REEFQQEIKWLEGQLRQATrprppgprdSQCAKLDEEVELLQEKLRE--KLDGFNELVI---KKDLADQQLLIQEEE--I 1343
Cdd:pfam15921 365 RDQFSQESGNLDDQLQKLL---------ADLHKREKELSLEKEQNKRlwDRDTGNSITIdhlRRELDDRNMEVQRLEalL 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1344 KHLE-ETNENIQRQMAQLQ---EELEKQRRSTEELEvvnsrnSEIEELKAIIEHLQENQEQLQKA-------------KA 1406
Cdd:pfam15921 436 KAMKsECQGQMERQMAAIQgknESLEKVSSLTAQLE------STKEMLRKVVEELTAKKMTLESSertvsdltaslqeKE 509
|
410
....*....|....*....
gi 1958758595 1407 EEIEQLHEVIEKLQSELSL 1425
Cdd:pfam15921 510 RAIEATNAEITKLRSRVDL 528
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1083-1423 |
8.52e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 8.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1083 QAVQKQQELLERLREESAAkdrLALELHTAEGLLEGFKVEKADLQEALGKKEESEQQLIVELEDLRK----------QLQ 1152
Cdd:COG3096 340 QTALRQQEKIERYQEDLEE---LTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQaldvqqtraiQYQ 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1153 QASRELltlkEENSVLWNQKETFTNEAKEREAALQKEVESLTRDQWESRKQ--------SEKDRATLLSQMRVLESELED 1224
Cdd:COG3096 417 QAVQAL----EKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKlsvadaarRQFEKAYELVCKIAGEVERSQ 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1225 -------QLVQHRGCAQLAEEVTTLKQQLATLDKHLRSQRQFMDEQAAEREHEREEFQQEIKwLEGQLRQAtrprppgpr 1297
Cdd:COG3096 493 awqtareLLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEE-LEELLAEL--------- 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1298 DSQCAKLDEEVELLQEK---LREKLDGFNELVikKDLAD--------QQLLIQEEEikHLEETNENIQRQMAQLQEELEK 1366
Cdd:COG3096 563 EAQLEELEEQAAEAVEQrseLRQQLEQLRARI--KELAArapawlaaQDALERLRE--QSGEALADSQEVTAAMQQLLER 638
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758595 1367 QRRSTEElevvnsrNSEIEELKaiiEHLQENQEQLQKAKAEEIEQLHEVIEKLQSEL 1423
Cdd:COG3096 639 EREATVE-------RDELAARK---QALESQIERLSQPGGAEDPRLLALAERLGGVL 685
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
1109-1421 |
8.54e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.38 E-value: 8.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1109 LHTAEGLLEGFKVEKA-------------------DLQEALGKKEESEQQLIVELEDLRKQLQQASRELLT--------- 1160
Cdd:pfam06160 69 LFEAEELNDKYRFKKAkkaldeieellddieedikQILEELDELLESEEKNREEVEELKDKYRELRKTLLAnrfsygpai 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1161 --LKEENSVLWNQKETFTN--------EAKEREAALQKEVESLtrdqwesrkqsEKDRATLLSQMRVLESELEDQLVQHR 1230
Cdd:pfam06160 149 deLEKQLAEIEEEFSQFEEltesgdylEAREVLEKLEEETDAL-----------EELMEDIPPLYEELKTELPDQLEELK 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1231 -GCAQLAEEvttlKQQLATLDkhlrsqrqfmdeqaaerehereeFQQEIKWLEGQLRQATrprppgprdSQCAKLD-EEV 1308
Cdd:pfam06160 218 eGYREMEEE----GYALEHLN-----------------------VDKEIQQLEEQLEENL---------ALLENLElDEA 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 1309 ELLQEKLREKLDGFNEL----VIKKDLADQQLLIQEEEIKHLEETNENIQRQMAQLQ-------EELEKQRRSTEELEVV 1377
Cdd:pfam06160 262 EEALEEIEERIDQLYDLlekeVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQqsytlneNELERVRGLEKQLEEL 341
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1958758595 1378 NSRNSEIEELKA--------IIEHLQENQEQLQKAKAEEIeqlhEVIEKLQS 1421
Cdd:pfam06160 342 EKRYDEIVERLEekevayseLQEELEEILEQLEEIEEEQE----EFKESLQS 389
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2041-2522 |
9.57e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2041 EELLQAIQEVFAREQENAELQprpysSDLGDYNSLVKKLEKVIQEQGDLQKVREHACLPDRSSLLAEIQALRAQLRmthl 2120
Cdd:COG1196 323 EELAELEEELEELEEELEELE-----EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR---- 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2121 qNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANDLQKTLSKEQEAASDVRKRLMVEQGAVQDLKSEL 2200
Cdd:COG1196 394 -AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2201 HACKQENTNLLESLDKVQQEVLRLRygHVTWSYSGTSSASAGRAVLDGKENELKVVLEELECERGKGQVLQAQQEEQQLR 2280
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLL--EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2281 HLQREGQSSRALEELkislekqlaqnnqlcvaLKHERAAKDNLQKELQIEASRcEALLAQEKGQLSELRKSLEAERSRSL 2360
Cdd:COG1196 551 IVVEDDEVAAAAIEY-----------------LKAAKAGRATFLPLDKIRARA-ALAAALARGAIGAAVDLVASDLREAD 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2361 ELSEALQHERLLTEQLSRNAQEACARQDTQAQHALLRKLKAEKARALELEAMLEKVQKQAAHTQQQLEAQAQERCLELRR 2440
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758595 2441 EKEVSGNLRSAVDALQTHKQELGCCLEREREKAAWLQAELEQLSARVKQQEARQDEKRMDRRSSREDLDKRKWQRVKEKL 2520
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
..
gi 1958758595 2521 RE 2522
Cdd:COG1196 773 ER 774
|
|
|