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Conserved domains on  [gi|1958807938|ref|XP_038955877|]
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zinc finger C4H2 domain-containing protein isoform X3 [Rattus norvegicus]

Protein Classification

zf-C4H2 domain-containing protein( domain architecture ID 11185706)

zf-C4H2 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
zf-C4H2 pfam10146
Zinc finger-containing protein; This is a family of proteins which appears to have a highly ...
1-198 1.36e-76

Zinc finger-containing protein; This is a family of proteins which appears to have a highly conserved zinc finger domain at the C terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members are annotated as being tumour-associated antigen HCA127 in humans but this could not confirmed.


:

Pssm-ID: 462963 [Multi-domain]  Cd Length: 213  Bit Score: 228.80  E-value: 1.36e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958807938   1 MEKIKARLKAEFEALESEERHLKEYKQEMDLLLQEKMAHVEELRLIHADINVMENTIKQSENDLNKLLESTRRLHDEYKP 80
Cdd:pfam10146  12 LEKLKERLLKELEAHENEEKCLKEYKKEMELLLQEKMAHVEELRLIHADINKMEKVIKEAEEERNRVLEGAVRLHEEYIP 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958807938  81 LKEHVDALRMT-LGLQRLPDLCEEEEKL-SLDYFEKQKAEWQTEPQEPPIPESLAAAAAAAQQLQVARKQDTRQT--ATF 156
Cdd:pfam10146  92 LKLEIDRMRRElLGLEELPLLHEEEEDLiQTTIFEKQYTSWPPTPSVPPVPPDPPGGLPSPGPPAPLQTLAAFRAmqPSG 171
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1958807938 157 RQQPPPMKACLSCHQQIHRNAPICPLCKAKSRSRNPKKPKRK 198
Cdd:pfam10146 172 SQQPPPMKACLSCHQQIHRNAPICPLCKAKSRSRNPKKPKRK 213
 
Name Accession Description Interval E-value
zf-C4H2 pfam10146
Zinc finger-containing protein; This is a family of proteins which appears to have a highly ...
1-198 1.36e-76

Zinc finger-containing protein; This is a family of proteins which appears to have a highly conserved zinc finger domain at the C terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members are annotated as being tumour-associated antigen HCA127 in humans but this could not confirmed.


Pssm-ID: 462963 [Multi-domain]  Cd Length: 213  Bit Score: 228.80  E-value: 1.36e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958807938   1 MEKIKARLKAEFEALESEERHLKEYKQEMDLLLQEKMAHVEELRLIHADINVMENTIKQSENDLNKLLESTRRLHDEYKP 80
Cdd:pfam10146  12 LEKLKERLLKELEAHENEEKCLKEYKKEMELLLQEKMAHVEELRLIHADINKMEKVIKEAEEERNRVLEGAVRLHEEYIP 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958807938  81 LKEHVDALRMT-LGLQRLPDLCEEEEKL-SLDYFEKQKAEWQTEPQEPPIPESLAAAAAAAQQLQVARKQDTRQT--ATF 156
Cdd:pfam10146  92 LKLEIDRMRRElLGLEELPLLHEEEEDLiQTTIFEKQYTSWPPTPSVPPVPPDPPGGLPSPGPPAPLQTLAAFRAmqPSG 171
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1958807938 157 RQQPPPMKACLSCHQQIHRNAPICPLCKAKSRSRNPKKPKRK 198
Cdd:pfam10146 172 SQQPPPMKACLSCHQQIHRNAPICPLCKAKSRSRNPKKPKRK 213
 
Name Accession Description Interval E-value
zf-C4H2 pfam10146
Zinc finger-containing protein; This is a family of proteins which appears to have a highly ...
1-198 1.36e-76

Zinc finger-containing protein; This is a family of proteins which appears to have a highly conserved zinc finger domain at the C terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members are annotated as being tumour-associated antigen HCA127 in humans but this could not confirmed.


Pssm-ID: 462963 [Multi-domain]  Cd Length: 213  Bit Score: 228.80  E-value: 1.36e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958807938   1 MEKIKARLKAEFEALESEERHLKEYKQEMDLLLQEKMAHVEELRLIHADINVMENTIKQSENDLNKLLESTRRLHDEYKP 80
Cdd:pfam10146  12 LEKLKERLLKELEAHENEEKCLKEYKKEMELLLQEKMAHVEELRLIHADINKMEKVIKEAEEERNRVLEGAVRLHEEYIP 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958807938  81 LKEHVDALRMT-LGLQRLPDLCEEEEKL-SLDYFEKQKAEWQTEPQEPPIPESLAAAAAAAQQLQVARKQDTRQT--ATF 156
Cdd:pfam10146  92 LKLEIDRMRRElLGLEELPLLHEEEEDLiQTTIFEKQYTSWPPTPSVPPVPPDPPGGLPSPGPPAPLQTLAAFRAmqPSG 171
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1958807938 157 RQQPPPMKACLSCHQQIHRNAPICPLCKAKSRSRNPKKPKRK 198
Cdd:pfam10146 172 SQQPPPMKACLSCHQQIHRNAPICPLCKAKSRSRNPKKPKRK 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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