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Conserved domains on  [gi|1958653889|ref|XP_038957026|]
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BRCA2-interacting transcriptional repressor EMSY isoform X34 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ENT super family cl04239
ENT domain; This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that ...
 17-59 1.43e-13

ENT domain; This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that is amplified in breast cancer and interacts with BRCA2. The N terminus of this protein is found to be similar to other vertebrate and plant proteins of unknown function. This domain has a completely conserved histidine residue that may be functionally important.


The actual alignment was detected with superfamily member pfam03735:

Pssm-ID: 461032  Cd Length: 71  Bit Score: 66.82  E-value: 1.43e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1958653889   17 KRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSMS 59
Cdd:pfam03735    1 KRQLRKLELEAYSSVLRAFRAQGDaLSWEKEKLLTELRKELNIS 44
COG3889 super family cl28569
Extracellular solute-binding protein, contains Ig-fold domain [General function prediction ...
 415-516 2.94e-04

Extracellular solute-binding protein, contains Ig-fold domain [General function prediction only];


The actual alignment was detected with superfamily member COG3889:

Pssm-ID: 443097 [Multi-domain]  Cd Length: 878  Bit Score: 45.40  E-value: 2.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  415 LPKPVTATLPTSSNSPIMVVSSNGAIM----TTKLVTTPTGTQATYTRPTVSPSLGRVATT-----------PGAATYVK 479
Cdd:COG3889    758 LPAEVTAKLSPGSYTLVVIAYSELVALpaiyTTSFIVTPAVTIAVSTTIQTLTDTDTTTTTsakttpslttaATTTTTST 837

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1958653889  480 TTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTI 516
Cdd:COG3889    838 TTSTTSVTTTAAALASAATAAIVVGVVAVAVAIATAI 874
PABP-1234 super family cl31127
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 882-1026 1.79e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


The actual alignment was detected with superfamily member TIGR01628:

Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 42.49  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  882 KQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQ-ADQLQHKLTQMPQLSVRHQKLTPL---QQEQAQPKPDAQHTQHTV 957
Cdd:TIGR01628  364 KEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQpPYYGQGPQQQFNGQPLGWPRMSMMptpMGPGGPLRPNGLAPMNAV 443

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958653889  958 VAKDRQLPTLMAQPPQTVVQvlAVKTTQQLPKLQQAPNQPKIYVQpqapQSQMALpTSSEKQPASQVEQ 1026
Cdd:TIGR01628  444 RAPSRNAQNAAQKPPMQPVM--YPPNYQSLPLSQDLPQPQSTASQ----GGQNKK-LAQVLASATPQMQ 505
 
Name Accession Description Interval E-value
ENT pfam03735
ENT domain; This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that ...
 17-59 1.43e-13

ENT domain; This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that is amplified in breast cancer and interacts with BRCA2. The N terminus of this protein is found to be similar to other vertebrate and plant proteins of unknown function. This domain has a completely conserved histidine residue that may be functionally important.


Pssm-ID: 461032  Cd Length: 71  Bit Score: 66.82  E-value: 1.43e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1958653889   17 KRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSMS 59
Cdd:pfam03735    1 KRQLRKLELEAYSSVLRAFRAQGDaLSWEKEKLLTELRKELNIS 44
COG3889 COG3889
Extracellular solute-binding protein, contains Ig-fold domain [General function prediction ...
 415-516 2.94e-04

Extracellular solute-binding protein, contains Ig-fold domain [General function prediction only];


Pssm-ID: 443097 [Multi-domain]  Cd Length: 878  Bit Score: 45.40  E-value: 2.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  415 LPKPVTATLPTSSNSPIMVVSSNGAIM----TTKLVTTPTGTQATYTRPTVSPSLGRVATT-----------PGAATYVK 479
Cdd:COG3889    758 LPAEVTAKLSPGSYTLVVIAYSELVALpaiyTTSFIVTPAVTIAVSTTIQTLTDTDTTTTTsakttpslttaATTTTTST 837

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1958653889  480 TTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTI 516
Cdd:COG3889    838 TTSTTSVTTTAAALASAATAAIVVGVVAVAVAIATAI 874
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 882-1026 1.79e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 42.49  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  882 KQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQ-ADQLQHKLTQMPQLSVRHQKLTPL---QQEQAQPKPDAQHTQHTV 957
Cdd:TIGR01628  364 KEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQpPYYGQGPQQQFNGQPLGWPRMSMMptpMGPGGPLRPNGLAPMNAV 443

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958653889  958 VAKDRQLPTLMAQPPQTVVQvlAVKTTQQLPKLQQAPNQPKIYVQpqapQSQMALpTSSEKQPASQVEQ 1026
Cdd:TIGR01628  444 RAPSRNAQNAAQKPPMQPVM--YPPNYQSLPLSQDLPQPQSTASQ----GGQNKK-LAQVLASATPQMQ 505
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 918-1095 7.02e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.84  E-value: 7.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  918 QLQHKLTQMPQLSVRHQKLTPlQQEQAQPKPDAQHTQHTVVAKDRQLPTLMAQPPQtvvQVLAVKTTQQLPKLQQAPNQP 997
Cdd:PRK10263   754 QPQQPVAPQQQYQQPQQPVAP-QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ---QPVAPQPQYQQPQQPVAPQPQ 829

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  998 kiYVQPQAPQSQmalptssekQPASQVEQPIITQgssvtkitfEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTA 1077
Cdd:PRK10263   830 --YQQPQQPVAP---------QPQDTLLHPLLMR---------NGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQ 889

                          170
                   ....*....|....*...
gi 1958653889 1078 VSDILQMSLMEAQIDTNV 1095
Cdd:PRK10263   890 MARLVEARLADFRIKADV 907
 
Name Accession Description Interval E-value
ENT pfam03735
ENT domain; This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that ...
 17-59 1.43e-13

ENT domain; This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that is amplified in breast cancer and interacts with BRCA2. The N terminus of this protein is found to be similar to other vertebrate and plant proteins of unknown function. This domain has a completely conserved histidine residue that may be functionally important.


Pssm-ID: 461032  Cd Length: 71  Bit Score: 66.82  E-value: 1.43e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1958653889   17 KRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSMS 59
Cdd:pfam03735    1 KRQLRKLELEAYSSVLRAFRAQGDaLSWEKEKLLTELRKELNIS 44
COG3889 COG3889
Extracellular solute-binding protein, contains Ig-fold domain [General function prediction ...
 415-516 2.94e-04

Extracellular solute-binding protein, contains Ig-fold domain [General function prediction only];


Pssm-ID: 443097 [Multi-domain]  Cd Length: 878  Bit Score: 45.40  E-value: 2.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  415 LPKPVTATLPTSSNSPIMVVSSNGAIM----TTKLVTTPTGTQATYTRPTVSPSLGRVATT-----------PGAATYVK 479
Cdd:COG3889    758 LPAEVTAKLSPGSYTLVVIAYSELVALpaiyTTSFIVTPAVTIAVSTTIQTLTDTDTTTTTsakttpslttaATTTTTST 837

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1958653889  480 TTSGSIITVVPKSLATLGGKIISSNIVSGTTTKITTI 516
Cdd:COG3889    838 TTSTTSVTTTAAALASAATAAIVVGVVAVAVAIATAI 874
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 882-1026 1.79e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 42.49  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  882 KQQKLSQPQLEQTQLQVKTLQCFQTKQKQTIHLQ-ADQLQHKLTQMPQLSVRHQKLTPL---QQEQAQPKPDAQHTQHTV 957
Cdd:TIGR01628  364 KEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQpPYYGQGPQQQFNGQPLGWPRMSMMptpMGPGGPLRPNGLAPMNAV 443

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958653889  958 VAKDRQLPTLMAQPPQTVVQvlAVKTTQQLPKLQQAPNQPKIYVQpqapQSQMALpTSSEKQPASQVEQ 1026
Cdd:TIGR01628  444 RAPSRNAQNAAQKPPMQPVM--YPPNYQSLPLSQDLPQPQSTASQ----GGQNKK-LAQVLASATPQMQ 505
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 918-1095 7.02e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.84  E-value: 7.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  918 QLQHKLTQMPQLSVRHQKLTPlQQEQAQPKPDAQHTQHTVVAKDRQLPTLMAQPPQtvvQVLAVKTTQQLPKLQQAPNQP 997
Cdd:PRK10263   754 QPQQPVAPQQQYQQPQQPVAP-QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ---QPVAPQPQYQQPQQPVAPQPQ 829

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958653889  998 kiYVQPQAPQSQmalptssekQPASQVEQPIITQgssvtkitfEGRQPPTVTKITGGSSVPKLTSPVTSISPIQASEKTA 1077
Cdd:PRK10263   830 --YQQPQQPVAP---------QPQDTLLHPLLMR---------NGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQ 889

                          170
                   ....*....|....*...
gi 1958653889 1078 VSDILQMSLMEAQIDTNV 1095
Cdd:PRK10263   890 MARLVEARLADFRIKADV 907
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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