|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
638-1090 |
6.86e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.86 E-value: 6.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 638 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfdHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQ 717
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 718 SQLRSDLDKLNKEVAAVQECYL----EVCREKDELESTLRKTMEKAQEQTRQL--------LEDREEHVRKLKlELEERY 785
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAkkkaEEKKKADEAKKKAEEDKKKADELKKAAaakkkadeAKKKAEEKKKAD-EAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 786 QETLKAEKqswLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPAR--RKATSDCGSQTDQAAYPA-AMPNAEALVL 862
Cdd:PTZ00121 1441 EEAKKADE---AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADeaKKKAEEAKKKADEAKKAAeAKKKADEAKK 1517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 863 AEE--QAHQVQQEKELTVKEALRKSEvelELKYCESIAQKVEtaVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVA 940
Cdd:PTZ00121 1518 AEEakKADEAKKAEEAKKADEAKKAE---EKKKADELKKAEE--LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 941 VAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQ 1020
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766038 1021 NE---EDYRQFLEDHRNKINEVLTAAKEdfvKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEE 1090
Cdd:PTZ00121 1673 DKkkaEEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
623-1112 |
1.15e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 1.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 623 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKH 702
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 703 AAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRkTMEKAQEQTRQLLEDREEHVRKLKLELE 782
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL-EALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 783 ERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLPARRKATSDCGSQTDQAAYPAAmpNAEALVL 862
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAELLEEAALLEAALAELLEELA--EAAARLL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 863 AEEQAHQVQQEKELTVKEALRKSE---VELELKYCESIAQKVETAVQNARSRWILELPMLAEYKAllrAQQQEWAKQQEV 939
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGlrgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA---AAAIEYLKAAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 940 AVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIH---- 1015
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevtl 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1016 --KIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEEDIL 1093
Cdd:COG1196 652 egEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
490
....*....|....*....
gi 1958766038 1094 TVLDFLLRDTQLEYDGDSQ 1112
Cdd:COG1196 732 AEREELLEELLEEEELLEE 750
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
622-1091 |
1.78e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 622 NREDILRLKNEVEVLQQQNQELKEAEEKLRStnqDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKA--------- 692
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKA---DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeakkkaee 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 693 -QIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELEST---LRKTME---KAQEQTRQ 765
Cdd:PTZ00121 1327 aKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKaeeKKKADEakkKAEEDKKK 1406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 766 LLE-DREEHVRKLKLELEERYQETLKAE----------KQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPAR 834
Cdd:PTZ00121 1407 ADElKKAAAAKKKADEAKKKAEEKKKADeakkkaeeakKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 835 --RKATSDCGSQTDQAAYPA-AMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEVEL---ELKYCESI-----AQKV 901
Cdd:PTZ00121 1487 eaKKKAEEAKKKADEAKKAAeAKKKADEAKKAEEakKADEAKKAEEAKKADEAKKAEEKKkadELKKAEELkkaeeKKKA 1566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 902 ETAvQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSE----LQNMKPNVASVQELEEKi 977
Cdd:PTZ00121 1567 EEA-KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEelkkAEEEKKKVEQLKKKEAE- 1644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 978 hSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFL--EDHRNKINEVLTAAKEDfvKQKTELL 1055
Cdd:PTZ00121 1645 -EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEE--KKKAEEL 1721
|
490 500 510
....*....|....*....|....*....|....*.
gi 1958766038 1056 LQKETEFQACLDQSRKEwtlQEAQRTQLEVHRYEED 1091
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKE---AEEDKKKAEEAKKDEE 1754
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
644-1305 |
2.27e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 2.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 644 KEAEEKLRSTNQ------DLCNQMRQMVQEFDHDKQEAvdrceRTYQqhheAMKAQIRESLLAKHAAEKQHLSEVYEGTQ 717
Cdd:COG1196 175 EEAERKLEATEEnlerleDILGELERQLEPLERQAEKA-----ERYR----ELKEELKELEAELLLLKLRELEAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 718 SQLRSDLDKLNKEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWL 797
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELE-ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 798 KAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLPARRKAtsdcgsqtdqaaypaampnAEALVLAEEQAHQVQQEKELT 877
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEA-EEELEEAEAELAEA-------------------EEALLEAEAELAEAEEELEEL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 878 VKEALRKSEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKwk 957
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLER-------LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE-- 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 958 selqnmkpnvASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWnkekqeeihkIQEQNEEDYRQFLEDHRNKIN 1037
Cdd:COG1196 456 ----------EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL----------LLLEAEADYEGFLEGVKAALL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1038 EVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEEDILTVLDFLLRDTQLEYDGDSQGKQLL 1117
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1118 EVMSVCSskwtSVQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKTSADAVSWNTGQGDSGVPAPLpvSTSGPCAQ 1197
Cdd:COG1196 596 AIGAAVD----LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS--LTGGSRRE 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1198 SSALLEAEAETDKKIFEmkdlccghcfQELEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRVVEELIEEN 1277
Cdd:COG1196 670 LLAALLEAEAELEELAE----------RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
650 660
....*....|....*....|....*...
gi 1958766038 1278 HDMKNKLETLRALCRTPPQSLSAGAAES 1305
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
235-985 |
1.14e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 235 KERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTK 314
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 315 KLRT-------TEITLESLKQQLVELH-HSESLQRAREQHESVVAGLTQKYEE-QVSCLQKNLDTTITALQEQVTwfpms 385
Cdd:TIGR02168 380 QLETlrskvaqLELQIASLNNEIERLEaRLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQE----- 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 386 ncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTEL---------INRLTRSLEDSQKQCAHLLQSGS----VH 452
Cdd:TIGR02168 455 ------------ELERLEEALEELREELEEAEQALDAAERELaqlqarldsLERLQENLEGFSEGVKALLKNQSglsgIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 453 EVTQLQLQLQQAQKAHI---LSESMNKALQEELTGLKEEISLYESAAE--LGVLPGDVEGDLSVeltescvglgiknvsw 527
Cdd:TIGR02168 523 GVLSELISVDEGYEAAIeaaLGGRLQAVVVENLNAAKKAIAFLKQNELgrVTFLPLDSIKGTEI---------------- 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 528 kQSKANSVAQQEPPNEKLSKDEVilKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRET-MEALQQSKDSD---RGMETKT 603
Cdd:TIGR02168 587 -QGNDREILKNIEGFLGVAKDLV--KFDPKLRKALSYLLGGVLVVDDLDNALELAKKLrPGYRIVTLDGDlvrPGGVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 604 ETSEKTTNQLWldspeaiNREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQmvqefdhdkqeAVDRCERTY 683
Cdd:TIGR02168 664 GSAKTNSSILE-------RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ-----------LRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 684 QQHHEA-MKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYlevcREKDELESTLRKTMEKAQEQ 762
Cdd:TIGR02168 726 RQISALrKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIEQLKEELKAL 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 763 TRQLLEDREEHVrklklELEERYQEtlKAEKQSWLKAQAAgATQVEHESRQKLIQQLEEEwQSKLNHSLparrkatsdcg 842
Cdd:TIGR02168 802 REALDELRAELT-----LLNEEAAN--LRERLESLERRIA-ATERRLEDLEEQIEELSED-IESLAAEI----------- 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 843 sqtdqaaypaampnaealvlAEEQAHQVQQEKELTVKEALRKSeVELELKYCESIAQKVETAVQNARSRwilelpMLAEY 922
Cdd:TIGR02168 862 --------------------EELEELIEELESELEALLNERAS-LEEALALLRSELEELSEELRELESK------RSELR 914
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958766038 923 KALLRAQQQEWAKQQEVAVAH-RLSLALSEAKEKWKSELQNMKPN----VASVQELEEKIHSLQKELE 985
Cdd:TIGR02168 915 RELEELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALenkiEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
233-1038 |
1.49e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 1.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 233 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 312
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 313 TKKLRTTEITLESLKQQLVELhhSESLQRAREQHESV---VAGLTQKYEEQVScLQKNLDTTITALQEQVTWFPmsncqw 389
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDEL--AEELAELEEKLEELkeeLESLEAELEELEA-ELEELESRLEELEEQLETLR------ 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 390 SKVGYFVLSEEDV---CTRLKDHVQQLERNQEAVRLEKTELINRLTRS-LEDSQKQCAHLLQSgsvhEVTQLQLQLQQAQ 465
Cdd:TIGR02168 386 SKVAQLELQIASLnneIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEE----LEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 466 KAHILSESMNKALQEELTGLKEEISLYESAAELGVLPGDVEG---DLSVELTESCVGLGIKNVSWKQ-------SKANSV 535
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfseGVKALLKNQSGLSGILGVLSELisvdegyEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 536 AQQEPPNEKLSKDEVILKLktQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTN---Q 612
Cdd:TIGR02168 542 ALGGRLQAVVVENLNAAKK--AIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalS 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 613 LWL-------DSPEAIN---------------------------------------REDILRLKNEVEVLQQQNQELKEA 646
Cdd:TIGR02168 620 YLLggvlvvdDLDNALElakklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 647 EEKLRSTNQDLCNQMRQmvqefdhdkqeAVDRCERTYQQHHEA-MKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLD 725
Cdd:TIGR02168 700 LAELRKELEELEEELEQ-----------LRKELEELSRQISALrKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 726 KLNKEVAAVQECYlevcREKDELESTLRKTMEKAQEQTRQLLEDREEHVrklklELEERYQEtlKAEKQSWLKAQAAgAT 805
Cdd:TIGR02168 769 RLEEAEEELAEAE----AEIEELEAQIEQLKEELKALREALDELRAELT-----LLNEEAAN--LRERLESLERRIA-AT 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 806 QVEHESRQKLIQQLEEEwQSKLNHSLPARRKATSDCGSQTDQA--AYPAAMPNAEALVLAEEQAHQVQQEKELTVKEA-- 881
Cdd:TIGR02168 837 ERRLEDLEEQIEELSED-IESLAAEIEELEELIEELESELEALlnERASLEEALALLRSELEELSEELRELESKRSELrr 915
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 882 ----LRKSEVELELKyCESIAQKVETAVQNARSRWILELPMLAEYKALLRAQQQEWakQQEVavaHRLslalseakekwK 957
Cdd:TIGR02168 916 eleeLREKLAQLELR-LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA--RRRL---KRL-----------E 978
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 958 SELQNMKP-NVASVQELEEkihsLQKELELKDEEvpvavRAELAKARnewnkEKQEEIhkIQEQNEEDYRQFLEDHrNKI 1036
Cdd:TIGR02168 979 NKIKELGPvNLAAIEEYEE----LKERYDFLTAQ-----KEDLTEAK-----ETLEEA--IEEIDREARERFKDTF-DQV 1041
|
..
gi 1958766038 1037 NE 1038
Cdd:TIGR02168 1042 NE 1043
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
638-1050 |
4.08e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 4.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 638 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTYQQHHEAMKAQI---RESLLAKHAAEKQHLSEVYE 714
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEE-KKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKK 1438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 715 GTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTME---------KAQEQTRQLLEDREEHVRKLKLELEERY 785
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakkadeakkKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 786 QETLKAE--KQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMPNA---EAL 860
Cdd:PTZ00121 1519 EEAKKADeaKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEArieEVM 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 861 VLAEE----QAHQVQQEKELTVK-EALRKSEVELelKYCESIAQKVETAVQNArsrwilELPMLAEYKALLRAQQQEWAK 935
Cdd:PTZ00121 1599 KLYEEekkmKAEEAKKAEEAKIKaEELKKAEEEK--KKVEQLKKKEAEEKKKA------EELKKAEEENKIKAAEEAKKA 1670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 936 QQEVAVAHRLSLAlSEAKEKWKSELQNMKPNVASVQELEEKI-HSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEI 1014
Cdd:PTZ00121 1671 EEDKKKAEEAKKA-EEDEKKAAEALKKEAEEAKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
410 420 430
....*....|....*....|....*....|....*.
gi 1958766038 1015 HKiqEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQ 1050
Cdd:PTZ00121 1750 KK--DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
743-1091 |
4.75e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.44 E-value: 4.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 743 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERyqETLKAEKQSWLKAQAAGATQVEHEsrQKLIQQLEEE 822
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDY--LKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 823 WQSKLNHSLparrkatsdcgsqtdqaaypaampNAEALVLAEEQAHQ--VQQEKELTVKEALRKSEVELELKYCESIAQK 900
Cdd:pfam02463 242 LQELLRDEQ------------------------EEIESSKQEIEKEEekLAQVLKENKEEEKEKKLQEEELKLLAKEEEE 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 901 VETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKekwKSELQNMKPNVASVQELEEKIHSL 980
Cdd:pfam02463 298 LKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK---REAEEEEEEELEKLQEKLEQLEEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 981 QKELELKDEEVPVAVRAELAKARNEWNKEKQE--EIHKIQEQNEEDYR---QFLEDHRNKINEVLTAAKEDFVKQKTELL 1055
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEaqLLLELARQLEDLLKeekKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350
....*....|....*....|....*....|....*.
gi 1958766038 1056 LQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEED 1091
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
627-1289 |
8.46e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 8.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 627 LRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTyqqhheAMKAQIRESLLAKHAaEK 706
Cdd:TIGR02168 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL------EELKEELESLEAELE-EL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 707 QHLSEVYEGTQSQLRSDLDKLNKEVAAVQEcylEVCREKDELEStLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQ 786
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLEL---QIASLNNEIER-LEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 787 ETLKAEKQSWLKAQAAGATQVEHESR-QKLIQQLEEEWQSKLN--HSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLA 863
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEElREELEEAEQALDAAERelAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 864 EE-----QAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRW-ILELPMLAEYKalLRAQQQEWAKQQ 937
Cdd:TIGR02168 520 GIlgvlsELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVtFLPLDSIKGTE--IQGNDREILKNI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 938 E--------------------------VAVAHRLSLALSEAKEKWKSEL------------------------------Q 961
Cdd:TIGR02168 598 EgflgvakdlvkfdpklrkalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsaktnssilerrR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 962 NMKPNVASVQELEEKIHSLQKEL-------ELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDHRN 1034
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALaelrkelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1035 KINEVLTAAKEDFVKQKTEL--LLQKETEFQACLDQSRKEWTLQEAQRTQLevhryeEDILTVLDFLLRDTQLEYDGDSQ 1112
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELaeAEAEIEELEAQIEQLKEELKALREALDEL------RAELTLLNEEAANLRERLESLER 831
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1113 GKQLLEVMSVCSSKwtsvqyfekvkacIHKALQDTLSLLIDNIASEREKRNVVKTSADAVSwntgqgdsgvpaplpVSTS 1192
Cdd:TIGR02168 832 RIAATERRLEDLEE-------------QIEELSEDIESLAAEIEELEELIEELESELEALL---------------NERA 883
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1193 GPCAQSSALLEAEAETDKKIFEMKdlccghcfQELEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRVVEE 1272
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELE--------SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
730
....*....|....*..
gi 1958766038 1273 LIEENHDMKNKLETLRA 1289
Cdd:TIGR02168 956 AEALENKIEDDEEEARR 972
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
718-1070 |
9.75e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 9.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 718 SQLRSDLDKLNKEVAAVQEcYLEVCREKDELESTLR----KTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEK 793
Cdd:TIGR02169 194 DEKRQQLERLRREREKAER-YQALLKEKREYEGYELlkekEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 794 qswLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSlparRKATSDCGSQTDQAaypaampnAEALVLAEEQAHQVQQE 873
Cdd:TIGR02169 273 ---LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASL----ERSIAEKERELEDA--------EERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 874 KElTVKEALRKSEVELElkycesiaqKVETAVQNARsrwilelpmlAEYKALLRAQQQEWAKQQEVAVAHRlslALSEAK 953
Cdd:TIGR02169 338 IE-ELEREIEEERKRRD---------KLTEEYAELK----------EELEDLRAELEEVDKEFAETRDELK---DYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 954 EKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEevpvAVRAELAKARNEwNKEKQEEIHKIQEQNE------EDYRQ 1027
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIA----GIEAKINELEEE-KEDKALEIKKQEWKLEqlaadlSKYEQ 469
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1958766038 1028 FLEDHRNKINEVltaakEDFVKQKTELLLQKETEFQACLDQSR 1070
Cdd:TIGR02169 470 ELYDLKEEYDRV-----EKELSKLQRELAEAEAQARASEERVR 507
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
743-1090 |
1.16e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 743 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSwlkaQAAGATQVEHESRQKLIQQLEEE 822
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDAR----KAEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 823 WQSKLNHSLPARRKAtsDCGSQTDQAAYPAAMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEvelELKYCESIAQK 900
Cdd:PTZ00121 1164 RKAEEARKAEDAKKA--EAARKAEEVRKAEELRKAEDARKAEAarKAEEERKAEEARKAEDAKKAE---AVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 901 VETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVavahRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSL 980
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA----RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 981 QKELELKDEEVPVAVRAELAKARNEWNKEKQE-----------EIHKIQEQNEEDYRQfLEDHRNKINEVLTAAKE---- 1045
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaeaeaaadEAEAAEEKAEAAEKK-KEEAKKKADAAKKKAEEkkka 1393
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1958766038 1046 DFVKQKTELLLQKETEFQACLDQSRKEwtlQEAQRTQLEVHRYEE 1090
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKKKA---DEAKKKAEEKKKADE 1435
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
305-1092 |
1.30e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 305 FKVSEEKLTKKLRTTEITLE-------SLKQQLVELH-HSESLQRAREQHESV----VAGLTQKYEEQVSCLQKnLDTTI 372
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDrledilnELERQLKSLErQAEKAERYKELKAELreleLALLVLRLEELREELEE-LQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 373 TALQEQVTwfpmsncqwSKVGYFVLSEEDVcTRLKDHVQQLERNQEAVR---LEKTELINRLTRSLEDSQKQCAHLLQSG 449
Cdd:TIGR02168 249 KEAEEELE---------ELTAELQELEEKL-EELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 450 SVHEVTQLQLQLQQAQKAHILSESMNKA--LQEELTGLKEEISlyESAAELGVLPGDVEgDLSVELTEscvglgiknvsw 527
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLeeLKEELESLEAELE--ELEAELEELESRLE-ELEEQLET------------ 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 528 KQSKANSVAQQeppneklskdevILKLKTQVQRLLSsnsmkrhLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSE 607
Cdd:TIGR02168 384 LRSKVAQLELQ------------IASLNNEIERLEA-------RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 608 KTTNQLWLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLRStNQDLCNQMRQMVQEFDHDKQEAVD---------- 677
Cdd:TIGR02168 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA-RLDSLERLQENLEGFSEGVKALLKnqsglsgilg 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 678 ------RCERTYQQhheAMKAQIRESL-----------------LAKHAAEKQHLSEVYEGTQSQLRSDldklNKEVAAV 734
Cdd:TIGR02168 524 vlseliSVDEGYEA---AIEAALGGRLqavvvenlnaakkaiafLKQNELGRVTFLPLDSIKGTEIQGN----DREILKN 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 735 QECYLEVCREKDELESTLRKTME-------------KAQEQTRQLleDREEHVRKLKLEL-----------EERYQETLK 790
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldNALELAKKL--RPGYRIVTLDGDLvrpggvitggsAKTNSSILE 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 791 AEKQ-SWLKAQAAGATQVEHESRQKLiQQLEEEwQSKLNHSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQ 869
Cdd:TIGR02168 675 RRREiEELEEKIEELEEKIAELEKAL-AELRKE-LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 870 VQQEKELTVKEAL---RKSEVELELKYCESIAQKVETAVQNARSRWILELPMLAEYKALL-----RAQQQEWAKQQEVAV 941
Cdd:TIGR02168 753 SKELTELEAEIEEleeRLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLESLERR 832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 942 AHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEvpvavRAELAKARNEWNKEKQEEIHKIQEQN 1021
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE-----RASLEEALALLRSELEELSEELRELE 907
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958766038 1022 E-----EDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQAclDQSRKEWTLQEAQRTQLEVHRYEEDI 1092
Cdd:TIGR02168 908 SkrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE--AEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
624-1396 |
8.55e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 8.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 624 EDILR-LKNEVEVLQQQnqelKEAEEKLRstnqdlcnqmRQMVQEFDHDKQEAVDRCERtYQQHHEAMKAQIRE--SLLA 700
Cdd:TIGR02168 192 EDILNeLERQLKSLERQ----AEKAERYK----------ELKAELRELELALLVLRLEE-LREELEELQEELKEaeEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 701 KHAAEKQhlseVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQ--EQTRQLLEDREEHVRKLK 778
Cdd:TIGR02168 257 ELTAELQ----ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAnlERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 779 LELEERYQEtLKAEKQSwLKAQAAGAtQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAypaampnae 858
Cdd:TIGR02168 333 DELAEELAE-LEEKLEE-LKEELESL-EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN--------- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 859 ALVLAEEQAHQVQ--QEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRwilelpmlaeykaLLRAQQQEWAKQ 936
Cdd:TIGR02168 401 EIERLEARLERLEdrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE-------------LERLEEALEELR 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 937 QEVAVAhrlslalSEAKEKWKSELQNMKPNVASVQELEEKIHSLQ---KELELKDEEVP--VAVRAELAKARNEW----- 1006
Cdd:TIGR02168 468 EELEEA-------EQALDAAERELAQLQARLDSLERLQENLEGFSegvKALLKNQSGLSgiLGVLSELISVDEGYeaaie 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1007 -------------NKEKQEEIHKIQEQNEEDYRQFLE-----DHRNKINEVLTAAKEDFVKQKTELLLQKETEFQAC--- 1065
Cdd:TIGR02168 541 aalggrlqavvveNLNAAKKAIAFLKQNELGRVTFLPldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsy 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1066 -LDQSRKEWTLQEAQRtQLEVHRYEEDILTVLDFLLRDTQLEYDGDSQGKQ-LLEVMSVCSSKWTSVQYFEKVKACIHKA 1143
Cdd:TIGR02168 621 lLGGVLVVDDLDNALE-LAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSsILERRREIEELEEKIEELEEKIAELEKA 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1144 LQDTLSLLiDNIASEREKRNVVKTSADAVSWNTGQGDSGVPAplpvsTSGPCAQSSALLEAEAETDKKIFEMKDLCCGHC 1223
Cdd:TIGR02168 700 LAELRKEL-EELEEELEQLRKELEELSRQISALRKDLARLEA-----EVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1224 FQELEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRV------VEELIEENHDMKNKLETLRALCRTPPQS 1297
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAanlrerLESLERRIAATERRLEDLEEQIEELSED 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1298 LSAGAAESARLlcsGQALEELRGQyIKAVKKIKRDMLRYIQESKERATEMvkAEVLRERQDTARKMHKYYLSCLQQILED 1377
Cdd:TIGR02168 854 IESLAAEIEEL---EELIEELESE-LEALLNERASLEEALALLRSELEEL--SEELRELESKRSELRRELEELREKLAQL 927
|
810
....*....|....*....
gi 1958766038 1378 NGKEEGAEKKIMSAASKLA 1396
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLS 946
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
746-999 |
1.03e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 746 DELESTlRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEwqs 825
Cdd:COG4913 235 DDLERA-HEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAE--- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 826 klnhslparrkaTSDCGSQTDQAaypaampnAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKycESIAQKVETAV 905
Cdd:COG4913 311 ------------LERLEARLDAL--------REELDELEAQIRGNGGDRLEQLEREIERLERELEER--ERRRARLEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 906 QNARSRWILELPMLAEYKALLRAQQQEWAK-----QQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASV-QELEEKIHS 979
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEelealEEALAEAEAALRDLRRELRELEAEIASLERRKSNIpARLLALRDA 448
|
250 260
....*....|....*....|
gi 1958766038 980 LQKELELKDEEVPVAvrAEL 999
Cdd:COG4913 449 LAEALGLDEAELPFV--GEL 466
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
636-1107 |
1.23e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 636 LQQQNQELKEAEEKLRStnqdlCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEvyeg 715
Cdd:COG4717 73 LKELEEELKEAEEKEEE-----YAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE---- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 716 tqsqLRSDLDKLNKEVAAVQEcyleVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEE--RYQETLKAEK 793
Cdd:COG4717 144 ----LPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEElqQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 794 QSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPArrkATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQE 873
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIA---AALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 874 KELTVKEALRKSEVELELKYCESIAQKvetAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAK 953
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEE---ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 954 EKWKSELQNMkpNVASVQELEEKIHSLQKELELkdeevpvavRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDHR 1033
Cdd:COG4717 370 QEIAALLAEA--GVEDEEELRAALEQAEEYQEL---------KEELEELEEQLEELLGELEELLEALDEEELEEELEELE 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1034 NKINEvltaakedfVKQKTELLLQKETEFQACLDQSRKEWTLQEA----QRTQLEVHRYEED--ILTVLDFLLRDTQLEY 1107
Cdd:COG4717 439 EELEE---------LEEELEELREELAELEAELEQLEEDGELAELlqelEELKAELRELAEEwaALKLALELLEEAREEY 509
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
233-498 |
1.68e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 233 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 312
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 313 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKYEEQVSCLQKNLDTTITALQEQvtwfpmsncqwsk 391
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEElEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL------------- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 392 vgyfvLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLtRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILS 471
Cdd:COG1196 389 -----LEALRAAAELAAQLEELEEAEEALLERLERLEEEL-EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260
....*....|....*....|....*..
gi 1958766038 472 ESMNKALQEELTGLKEEISLYESAAEL 498
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEA 489
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
528-1113 |
1.91e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.58 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 528 KQSKANSVAQQEPPNEKLSKDEVILKLKTQVQRLlsSNSMKRHLVSELQRDLRDCRETMEALQQS-----KDSDRGMETK 602
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRARKAAPLAAHIKAvtqieQQAQRIHTEL 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 603 TETSEKTTNQLWLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQ------MRQMVQEFDHDKQEAV 676
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQhtltqhIHTLQQQKTTLTQKLQ 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 677 DRCERTYQQHHEAMKAqirESLLAKHAAEKQHLSEVYEGTQSQLRsdldKLNKEVAAVQECYLEVCREKDELESTLRKTM 756
Cdd:TIGR00618 397 SLCKELDILQREQATI---DTRTSAFRDLQGQLAHAKKQQELQQR----YAELCAAAITCTAQCEKLEKIHLQESAQSLK 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 757 EKAQ-EQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQ------SKLNH 829
Cdd:TIGR00618 470 EREQqLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAqletseEDVYH 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 830 SLPARRKATSDCGSQTdQAAYPAAMPNAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKyCESIAQKVETAVQNAR 909
Cdd:TIGR00618 550 QLTSERKQRASLKEQM-QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA-CEQHALLRKLQPEQDL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 910 SRWILELpmlaeykallRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDE 989
Cdd:TIGR00618 628 QDVRLHL----------QQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 990 EVP---------VAVRAELAKARNEWNKEKQEEIHKIQeQNEEDYRQFLEDHRNKINEVLTA-AKEDFVKQKTEL----L 1055
Cdd:TIGR00618 698 MLAqcqtllrelETHIEEYDREFNEIENASSSLGSDLA-AREDALNQSLKELMHQARTVLKArTEAHFNNNEEVTaalqT 776
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958766038 1056 LQKETEFQACLDQSRKEW-TLQEAQRTQLEVHRYE----EDILTVLDFLLR------DTQLEYDGDSQG 1113
Cdd:TIGR00618 777 GAELSHLAAEIQFFNRLReEDTHLLKTLEAEIGQEipsdEDILNLQCETLVqeeeqfLSRLEEKSATLG 845
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
228-822 |
5.57e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.09 E-value: 5.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 228 LQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEremqleaQIHALETQIEAFKV 307
Cdd:TIGR04523 59 LDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE-------QKNKLEVELNKLEK 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 308 SEEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTqKYEEQVSCLQKNLDTtiTALQEQVTWFPMSNC 387
Cdd:TIGR04523 132 QKKENKKNIDKFLTEIKKKEKELEKL--NNKYNDLKKQKEELENELN-LLEKEKLNIQKNIDK--IKNKLLKLELLLSNL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 388 QWSKVGYFVLSEEdvCTRLKDHVQQLERNQEavrlEKTELINRLTRSLEDSQKQCAHLLQSgSVHEVTQLQLQLQQAQKA 467
Cdd:TIGR04523 207 KKKIQKNKSLESQ--ISELKKQNNQLKDNIE----KKQQEINEKTTEISNTQTQLNQLKDE-QNKIKKQLSEKQKELEQN 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 468 HILSESMNKALQEeltgLKEEISlyesaaelgVLPGDVEGDLSVELTEScvglgIKNVswKQSKANSVAQQEPPNEKLSK 547
Cdd:TIGR04523 280 NKKIKELEKQLNQ----LKSEIS---------DLNNQKEQDWNKELKSE-----LKNQ--EKKLEEIQNQISQNNKIISQ 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 548 -DEVILKLKTQVQRLLSSNsmkrhlvSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLwLDSPEAINREdi 626
Cdd:TIGR04523 340 lNEQISQLKKELTNSESEN-------SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK-IQNQEKLNQQ-- 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 627 lrLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTYQQhheaMKAQIrESLLAKHAAEK 706
Cdd:TIGR04523 410 --KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRES----LETQL-KVLSRSINKIK 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 707 QHLsevyEGTQSQLR---SDLDKLNKEVAAVQECYLEVCREKDELESTLRKtMEKAQEQTRQLLEDREEHVRKLKLELEE 783
Cdd:TIGR04523 482 QNL----EQKQKELKskeKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK-LESEKKEKESKISDLEDELNKDDFELKK 556
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1958766038 784 RYQETLKAEKQSWLKA--QAAGATQVEHESRQKLIQQLEEE 822
Cdd:TIGR04523 557 ENLEKEIDEKNKEIEElkQTQKSLKKKQEEKQELIDQKEKE 597
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
277-1061 |
9.59e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 9.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 277 SQKLFQSGKEREMQLEAQIHALETQIEafkvSEEKLTKKlrtTEITLESLKQQLVELHHSESLQRAREQHESVVAGLTQK 356
Cdd:TIGR00606 208 ELKYLKQYKEKACEIRDQITSKEAQLE----SSREIVKS---YENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQ 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 357 YEEQVSCLQKNLDTTITALQEQVtwfpmsNCQWSKVGYFVLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTR-SL 435
Cdd:TIGR00606 281 MEKDNSELELKMEKVFQGTDEQL------NDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRlQL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 436 EDSQKQCAHLLQSgsvhevtqlqlqlqqaqkahilSESMNKALQEELTGLKeeislyesaaelgvlpgdvEGDLSVELTE 515
Cdd:TIGR00606 355 QADRHQEHIRARD----------------------SLIQSLATRLELDGFE-------------------RGPFSERQIK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 516 SCVGLGIKNVSWKQSKANSVAQQEPPNEKLsKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDS 595
Cdd:TIGR00606 394 NFHTLVIERQEDEAKTAAQLCADLQSKERL-KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 596 DRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNE-VEVLQQQNQELKEAEEKLRSTnqdlcnQMRQMVQEFDHDKQE 674
Cdd:TIGR00606 473 ILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHT------TTRTQMEMLTKDKMD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 675 AVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHlseVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRK 754
Cdd:TIGR00606 547 KDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLH---SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSS 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 755 TMEKAQEQTRQllEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHES----------RQKLIQQLEEEWQ 824
Cdd:TIGR00606 624 YEDKLFDVCGS--QDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpvcqrvfqTEAELQEFISDLQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 825 SKLnHSLPARRKATSDCGSQTDQAaypaampNAEALVLAEEQAHQVQ-QEKEL-TVKEALR---------KSEVELELKY 893
Cdd:TIGR00606 702 SKL-RLAPDKLKSTESELKKKEKR-------RDEMLGLAPGRQSIIDlKEKEIpELRNKLQkvnrdiqrlKNDIEEQETL 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 894 CESIAQKVETAVQNARSRWILElPMLAEYKALLRAQQQEWAKQQEVAVA---HRLSLALSEAKEKWKSELQNMKPNVASV 970
Cdd:TIGR00606 774 LGTIMPEEESAKVCLTDVTIME-RFQMELKDVERKIAQQAAKLQGSDLDrtvQQVNQEKQEKQHELDTVVSKIELNRKLI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 971 QELEEKIHSLQKEL-ELKDEEVPVAVRAELAKARNEWNKEKQEEihkIQEQNEEdyrqfLEDHRNKINEvLTAAKEDFVK 1049
Cdd:TIGR00606 853 QDQQEQIQHLKSKTnELKSEKLQIGTNLQRRQQFEEQLVELSTE---VQSLIRE-----IKDAKEQDSP-LETFLEKDQQ 923
|
810
....*....|..
gi 1958766038 1050 QKTELLLQKETE 1061
Cdd:TIGR00606 924 EKEELISSKETS 935
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
225-769 |
1.34e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 225 IIQLQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEA 304
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 305 FKVSEEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTQKYEEQVSCLQK--NLDTTITALQEQVTwf 382
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEA--EEALLEAEAELAEAEEELEELAEELLEALRAaaELAAQLEELEEAEE-- 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 383 pmsncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQ 462
Cdd:COG1196 411 ---------------ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 463 QAQKAHILSESMNKALQEELtgLKEEISLYESAAE-----------------LGVLPGD---VEGDLSVELTESCVGLGI 522
Cdd:COG1196 476 EAALAELLEELAEAAARLLL--LLEAEADYEGFLEgvkaalllaglrglagaVAVLIGVeaaYEAALEAALAAALQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 523 KNVS--------WKQSKA-------NSVAQQEPPNEKLSKDEVILKLKTQVQRLLSSNSMKRHLVSE--LQRDLRDCRET 585
Cdd:COG1196 554 EDDEvaaaaieyLKAAKAgratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDtlLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 586 MEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMV 665
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 666 QEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEgtqSQLRSDLDKLNKEV--------AAVQEc 737
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL---EELERELERLEREIealgpvnlLAIEE- 789
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1958766038 738 YLEVCREKDELES----------TLRKTMEKAQEQTRQLLED 769
Cdd:COG1196 790 YEELEERYDFLSEqredleeareTLEEAIEEIDRETRERFLE 831
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
405-985 |
1.50e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 405 RLKDHVQQLERNQEAVRLEKTEL---INRLTRSLEDSQKQCAHLLQSgsvhevtqlqlqLQQAQKAHILSESMNKALQEE 481
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELrleLEELELELEEAQAEEYELLAE------------LARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 482 LTGLKEEISLYESAAELGVlpgDVEGDLSVELTESCVGLGIKNVSWKQSKANSVAQQEppnEKLSKDEVILKLKTQVQRL 561
Cdd:COG1196 318 LEELEEELAELEEELEELE---EELEELEEELEEAEEELEEAEAELAEAEEALLEAEA---ELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 562 LSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSdrgmetktetsekttnqlwLDSPEAINREDILRLKNEVEVLQQQNQ 641
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEE-------------------LEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 642 ELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAvdrcertyqqhheamkAQIRESLLAKHAAEKQHLSEVYEGTQSQLR 721
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEEL----------------AEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 722 SDLDKLNKEVAAVQECYLEV-----CREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSW 796
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 797 LKAQAAGAT--QVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAypaAMPNAEALVLAEEQAHQVQQEK 874
Cdd:COG1196 597 IGAAVDLVAsdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL---EGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 875 ELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKE 954
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELA-------EAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
570 580 590
....*....|....*....|....*....|.
gi 1958766038 955 KWKSELQNMKPNVASVQELEEKIHSLQKELE 985
Cdd:COG1196 747 LLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
233-822 |
1.57e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 233 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 312
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 313 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKY---EEQVSCLQKNLDTTITALQEQVTwfpmsncq 388
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEElAELEEELEELEEELEELEEELeeaEEELEEAEAELAEAEEALLEAEA-------- 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 389 wskvgyfvlSEEDVCTRLKDHVQQLERNQEAvRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAH 468
Cdd:COG1196 373 ---------ELAEAEEELEELAEELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 469 ILSESMNKALQEELTGLKEEISLYESAAELgvlpgdvegdlsvELTESCVGLGIKNVSWKQSKANSVAQQEPPNEKLSKD 548
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEA-------------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 549 EVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILR 628
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 629 LKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQH 708
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 709 LSEVYEGTQSQLRSDLDKLNKEVAAVqecylevcREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQET 788
Cdd:COG1196 670 LLAALLEAEAELEELAERLAEEELEL--------EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590
....*....|....*....|....*....|....
gi 1958766038 789 LKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEE 822
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
642-1012 |
1.65e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 642 ELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQ---EAVDRCERTYQQHHEAMKAQirESLLAKHAAEKQHLSEvyegtqs 718
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENrldELSQELSDASRKIGEIEKEI--EQLEQEEEKLKERLEE------- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 719 qLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQEtlkaekqswLK 798
Cdd:TIGR02169 742 -LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR---------IE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 799 AQAAgATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMpnaeALVLAEEQAHQVQQEKELTV 878
Cdd:TIGR02169 812 ARLR-EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL----EEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 879 KEALRKsEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWA------KQQEVAVAHRLSLA-LSE 951
Cdd:TIGR02169 887 LKKERD-ELEAQLRELERKIEELEAQIEKKRKR-------LSELKAKLEALEEELSeiedpkGEDEEIPEEELSLEdVQA 958
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766038 952 AKEKWKSELQNMKP-NVASVQELEEkihSLQKELELKDE-EVPVAVRAELAKARNEWNKEKQE 1012
Cdd:TIGR02169 959 ELQRVEEEIRALEPvNMLAIQEYEE---VLKRLDELKEKrAKLEEERKAILERIEEYEKKKRE 1018
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
227-342 |
3.95e-04 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 45.39 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 227 QLQVLNKAKERQLDSLVEKLND----RERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKeremqleaQIHALETqi 302
Cdd:pfam09798 5 KLELLQQEKEKELEKLKNSYEElkssHEEELEKLKQEVQKLEDEKKFLLNELRSLSATSPASS--------QSHETDT-- 74
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1958766038 303 eafKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRA 342
Cdd:pfam09798 75 ---DDSSSVSLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
622-1391 |
4.30e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 622 NREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCErtyQQHHEAMKAQIRESLLAK 701
Cdd:pfam02463 214 QLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLK---ENKEEEKEKKLQEEELKL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 702 HAAEKQHLSEVYEGTQSQLRSDLDKLN----------KEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDRE 771
Cdd:pfam02463 291 LAKEEEELKSELLKLERRKVDDEEKLKesekekkkaeKELKKEKEEIEELEKELKELE-IKREAEEEEEEELEKLQEKLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 772 EHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDcgSQTDQAayP 851
Cdd:pfam02463 370 QLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES--IELKQG--K 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 852 AAMPNAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSrwilelpMLAEYKALLRAQQQ 931
Cdd:pfam02463 446 LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESK-------ARSGLKVLLALIKD 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 932 EWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKarnewnkeKQ 1011
Cdd:pfam02463 519 GVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLK--------LP 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1012 EEIHKIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEED 1091
Cdd:pfam02463 591 LKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1092 ILTVLDFLLRDTQLEYDGDSQGKQLLEVMSVCSSKWTSVQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKTSADA 1171
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1172 VSWNTGQGDSGVPAPLPvstsgpcAQSSALLEAEAETDKKIFEMKDLCCGHCFQELEKEKQECQDLRRKLEKSRRHLQHL 1251
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKS-------ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1252 ERTHKATVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTppqslsagAAESARLLCSGQALEELRGQYIKAVKKIKR 1331
Cdd:pfam02463 824 IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITK--------EELLQELLLKEEELEEQKLKDELESKEEKE 895
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766038 1332 DMLRYIQESKERATEMVKAEVLRERQDTARKMHKYYLSCLQQI---LEDNGKEEGAEKKIMSA 1391
Cdd:pfam02463 896 KEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEellLEEADEKEKEENNKEEE 958
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
236-822 |
5.61e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 5.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 236 ERQLDSLvEKlnDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTKK 315
Cdd:COG1196 199 ERQLEPL-ER--QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 316 LRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTQKYEEQVSclqknLDTTITALQEQvtwfpmsncqwskvgyf 395
Cdd:COG1196 276 LEELELELEEAQAEEYEL--LAELARLEQDIARLEERRRELEERLEE-----LEEELAELEEE----------------- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 396 VLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQcAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMN 475
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 476 KALQEELTGLKEEISLYESAAELGVLPGDVEGDLSVELTescvglgiknvswkqskansvaqqeppnEKLSKDEVILKLK 555
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE----------------------------EEAELEEEEEALL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 556 TQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVE- 634
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEa 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 635 ----VLQQQNQELKEAEEKLRSTNQDLcnqmRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLS 710
Cdd:COG1196 543 alaaALQNIVVEDDEVAAAAIEYLKAA----KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 711 EVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTRQLLEDREEhvRKLKLELEERYQETLK 790
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE--LEELAERLAEEELELE 696
|
570 580 590
....*....|....*....|....*....|..
gi 1958766038 791 AEKQSWLKAQAAGATQVEHESRQKLIQQLEEE 822
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
636-864 |
5.85e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 636 LQQQNQELKEAEEKLrSTNQDLCNQMRQMVQEFdhdkQEAVDRCERtyQQHHEAMKAQIRESLLAKHAAE-----KQHLS 710
Cdd:COG3096 450 EQQATEEVLELEQKL-SVADAARRQFEKAYELV----CKIAGEVER--SQAWQTARELLRRYRSQQALAQrlqqlRAQLA 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 711 EV--YEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLrktmEKAQEQTRQLLEDREEHVRKLKlELEERYQEt 788
Cdd:COG3096 523 ELeqRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQL----EELEEQAAEAVEQRSELRQQLE-QLRARIKE- 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 789 LKAEKQSWLKAQAAGATQVEH-----ESRQKLI----QQLEEEWQSKLNHSLPARRKATSDcgSQTDQAAYPAAMPNAEA 859
Cdd:COG3096 597 LAARAPAWLAAQDALERLREQsgealADSQEVTaamqQLLEREREATVERDELAARKQALE--SQIERLSQPGGAEDPRL 674
|
....*
gi 1958766038 860 LVLAE 864
Cdd:COG3096 675 LALAE 679
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
233-437 |
7.68e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 7.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 233 KAKERQLDSLVEKLNDRERQIRYLnhqllivQDEKDGLALSLRESQKLFQSGKERE--MQLEAQIHALETQIEAfkvsee 310
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELER------ 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 311 kltkkLRTTEITLESLKQQLvelhhsESLQRAREQHESVVAGLTQKYEEQVSCLqKNLDTTITALQEQVTWFPMSNCQWS 390
Cdd:COG4913 680 -----LDASSDDLAALEEQL------EELEAELEELEEELDELKGEIGRLEKEL-EQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958766038 391 kVGYF--VLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLED 437
Cdd:COG4913 748 -RALLeeRFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
636-822 |
9.20e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 9.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 636 LQQQNQELKEAEEKLRSTNQDLcNQMRQMVQEFDHDKQEAvdrcertyQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEG 715
Cdd:COG4942 57 LAALERRIAALARRIRALEQEL-AALEAELAELEKEIAEL--------RAELEAQKEELAELLRALYRLGRQPPLALLLS 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 716 TQS--QLRSDLDKLNKEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEK 793
Cdd:COG4942 128 PEDflDAVRRLQYLKYLAPARREQAEELRADLAELA-ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEK 206
|
170 180
....*....|....*....|....*....
gi 1958766038 794 QSWLKAQAAGATQVEHESRQKLIQQLEEE 822
Cdd:COG4942 207 ELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
198-590 |
1.02e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 198 EIAGSDMFEGLQQQFLGANENSAENIHIIQLQVlnKAKERQLDSLVEklnDRERQIRYLnhqllIVQDEKDGLALSLRES 277
Cdd:TIGR02169 161 EIAGVAEFDRKKEKALEELEEVEENIERLDLII--DEKRQQLERLRR---EREKAERYQ-----ALLKEKREYEGYELLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 278 QKlfQSGKEREMQLEAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRAREQHEsvvagltqky 357
Cdd:TIGR02169 231 EK--EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE---------- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 358 eeqVSCLQKNLDTTITALQEQvtwfpMSNCQWSKVGYFVLSEedvctRLKDHVQQLERNQEAVRLEKTELINRLtrsleD 437
Cdd:TIGR02169 299 ---LEAEIASLERSIAEKERE-----LEDAEERLAKLEAEID-----KLLAEIEELEREIEEERKRRDKLTEEY-----A 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 438 SQKQCAHLLQSgsvhevtqlqlQLQQAQKAHILSESMNKALQEELTGLKEEIslYESAAELGVLpgdveGDLSVELTESc 517
Cdd:TIGR02169 361 ELKEELEDLRA-----------ELEEVDKEFAETRDELKDYREKLEKLKREI--NELKRELDRL-----QEELQRLSEE- 421
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766038 518 vGLGIKNvswkqskANSVAQQEPPNEKLSKDEVILKLKTQVQRLLSSNSMKrhlvSELQRDLRDCRETMEALQ 590
Cdd:TIGR02169 422 -LADLNA-------AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL----SKYEQELYDLKEEYDRVE 482
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
275-792 |
1.08e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 275 RESQKLF-QSGKEREMQLEaQIHALETQIEAFKVSEE---KLTKKLRTTEITLESLKQQLVEL-HHSESLQRA------- 342
Cdd:COG4717 53 KEADELFkPQGRKPELNLK-ELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELrEELEKLEKLlqllply 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 343 --REQHESVVAGLTQKYEEqvsclqknLDTTITALQEQVTwfpmsncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAV 420
Cdd:COG4717 132 qeLEALEAELAELPERLEE--------LEERLEELRELEE-----------------ELEELEAELAELQEELEELLEQL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 421 RLEKTELINRLTRSLEDSQKQCAHLlqsgsvHEVTQLQLQLQQAQKAHILSESMNKALQEELTGLKEEISLYESAAELGV 500
Cdd:COG4717 187 SLATEEELQDLAEELEELQQRLAEL------EEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLA 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 501 LPGDVEGDLSVELTE-----SCVGLGIKNVSWKQSKANSVAQQEPPNEKLSKDEVI--LKLKTQVQRLLSSNSMKRHLVS 573
Cdd:COG4717 261 LLGLGGSLLSLILTIagvlfLVLGLLALLFLLLAREKASLGKEAEELQALPALEELeeEELEELLAALGLPPDLSPEELL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 574 ELQRDLRDCRETMEALQQSKDSdrgmeTKTETSEKTTNQLwLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLRST 653
Cdd:COG4717 341 ELLDRIEELQELLREAEELEEE-----LQLEELEQEIAAL-LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEEL 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 654 NQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAA 733
Cdd:COG4717 415 LGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAA 494
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958766038 734 VQ--ECYLEVCREKDElESTLRKTMEKAQEQTRQLLEDREEHVR---KLKLELEERYQETLKAE 792
Cdd:COG4717 495 LKlaLELLEEAREEYR-EERLPPVLERASEYFSRLTDGRYRLIRideDLSLKVDTEDGRTRPVE 557
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
623-821 |
1.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 623 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLcnqmrQMVQEFDHDKQEaVDRCERTYQQHhEAMKAQIRESLLAKH 702
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREAL-----QRLAEYSWDEID-VASAEREIAEL-EAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 703 AAEKQhlsevyegtQSQLRSDLDKLNKEVAAVQecylevcREKDELESTLrKTMEKAQEQTRQLLEDREEHVRK-LKLEL 781
Cdd:COG4913 689 ALEEQ---------LEELEAELEELEEELDELK-------GEIGRLEKEL-EQAEEELDELQDRLEAAEDLARLeLRALL 751
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958766038 782 EERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEE 821
Cdd:COG4913 752 EERFAAALGDAVERELRENLEERIDALRARLNRAEEELER 791
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
291-932 |
1.95e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 291 LEAQIHALETQIEAFKVSEEKltkklrtteiTLESLKQQlvelhHSESLQRAREQHESVVAGLTQK---YEEQVSCLQKN 367
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQN----------KIELLLQQ-----HQDRIEQLISEHEVEITGLTEKassARSQANSIQSQ 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 368 LDTtitaLQEQV-TWFPMSNCQWSKVGYFV---LSEEDVCTRL-KDHVQQLERNqeaVRLEKTELINRLTRSLEDSQkqc 442
Cdd:pfam15921 301 LEI----IQEQArNQNSMYMRQLSDLESTVsqlRSELREAKRMyEDKIEELEKQ---LVLANSELTEARTERDQFSQ--- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 443 ahllQSGSV-HEVTQLQLQLQQAQKAHILSESMNKALQEELTGlkEEISLYESAAELGvlpgdvEGDLSVELTESCVglg 521
Cdd:pfam15921 371 ----ESGNLdDQLQKLLADLHKREKELSLEKEQNKRLWDRDTG--NSITIDHLRRELD------DRNMEVQRLEALL--- 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 522 iknvswKQSKANSVAQQEPPNEKLS-KDEVILKLKTQVQRLLSSNSMKRHLVSEL---QRDLRDCRETMEALQQS-KDSD 596
Cdd:pfam15921 436 ------KAMKSECQGQMERQMAAIQgKNESLEKVSSLTAQLESTKEMLRKVVEELtakKMTLESSERTVSDLTASlQEKE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 597 RGMetktetsekttnqlwldspEAINREdILRLKNEVEVLQQQNQELKEAEEKLRSTnQDLCNQMRQMVQEFDHD----K 672
Cdd:pfam15921 510 RAI-------------------EATNAE-ITKLRSRVDLKLQELQHLKNEGDHLRNV-QTECEALKLQMAEKDKVieilR 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 673 QEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEK----QHLSEVYEGTQSQLR------SDLDKLNKEVAAVQECYLEVC 742
Cdd:pfam15921 569 QQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRrlelQEFKILKDKKDAKIRelearvSDLELEKVKLVNAGSERLRAV 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 743 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKaekqswLKAQAAGAtQVEHESRQKLIQQLEEE 822
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNK------LKMQLKSA-QSELEQTRNTLKSMEGS 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 823 WQSKLNHSLPARRKATSDCGsQTDqAAYPAAMPNAEALVLAEEQAHQVQQEKELTVKE----ALRKSEVELELKYCESIA 898
Cdd:pfam15921 722 DGHAMKVAMGMQKQITAKRG-QID-ALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQElstvATEKNKMAGELEVLRSQE 799
|
650 660 670
....*....|....*....|....*....|....
gi 1958766038 899 QKVETAVQNARSRWILELPMLAEYKALLRAQQQE 932
Cdd:pfam15921 800 RRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
234-359 |
2.01e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 234 AKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRE-SQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 312
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1958766038 313 TKKLRTTEITLESLKQQLVELHhsESLQRAREQHESVVAGLTQKYEE 359
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALR--AEAAALLEALEEELEALEEALAE 409
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
531-651 |
2.05e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 531 KANSVAQQEPPNEKLSKDEVILKLKTQVQRLlssnsmkRHLVSELQRDLRDCRETMEALQQSKDSDRgmetktetseKTT 610
Cdd:COG2433 395 PEAEREKEHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAELEEKDERIERLERELSEAR----------SEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958766038 611 NQLWLDSPEAINRE-DILRLKNEVEVLQQQNQELKEAEEKLR 651
Cdd:COG2433 458 RREIRKDREISRLDrEIERLERELEEERERIEELKRKLERLK 499
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
695-1040 |
2.19e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 695 RESLLAKHAAEKQHLSEVYEgTQSQLRSDLDKLNKEVAAVQECyLEVCREKDELEStLRKTMEKAQEQTRQLLEDREEhV 774
Cdd:COG4913 612 LAALEAELAELEEELAEAEE-RLEALEAELDALQERREALQRL-AEYSWDEIDVAS-AEREIAELEAELERLDASSDD-L 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 775 RKLKLELEEryqetLKAEKQswlkaqaagATQVEHESRQKLIQQLEEEWQSklnhslparrkatsdcgsqtdqaaypaam 854
Cdd:COG4913 688 AALEEQLEE-----LEAELE---------ELEEELDELKGEIGRLEKELEQ----------------------------- 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 855 pnaealvlAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNArsrwilelpmlaeykalLRAQQQEWA 934
Cdd:COG4913 725 --------AEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN-----------------LEERIDALR 779
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 935 KQQEVAvAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHslqkelELKDEEVPvAVRAELAKARNEWNKEKQEEI 1014
Cdd:COG4913 780 ARLNRA-EEELERAMRAFNREWPAETADLDADLESLPEYLALLD------RLEEDGLP-EYEERFKELLNENSIEFVADL 851
|
330 340
....*....|....*....|....*..
gi 1958766038 1015 -HKIQEQNEEDYRQFledhrNKINEVL 1040
Cdd:COG4913 852 lSKLRRAIREIKERI-----DPLNDSL 873
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1200-1387 |
2.34e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1200 ALLEAEAETDKKIFEMKDlccghcfqELEKEKQEC-QDLRRKleksRRHLQHLERT---HKATVEKLGEENSRVVEELIE 1275
Cdd:PRK12704 47 AKKEAEAIKKEALLEAKE--------EIHKLRNEFeKELRER----RNELQKLEKRllqKEENLDRKLELLEKREEELEK 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 1276 ENHDMKNKLETLralcrtppqslsagaaesarllcsgqalEELRGQYIKAVKKIKRDMLRYIQESKERATEMVKAEVLRE 1355
Cdd:PRK12704 115 KEKELEQKQQEL----------------------------EKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEE 166
|
170 180 190
....*....|....*....|....*....|...
gi 1958766038 1356 -RQDTARKMHKYylsclqqilEDNGKEEgAEKK 1387
Cdd:PRK12704 167 aRHEAAVLIKEI---------EEEAKEE-ADKK 189
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
236-345 |
2.71e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 41.35 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 236 ERQLDSLVEKLNDRERQIRylnhqlLIVQDEKDGLALSLresqklfqsgKEREMQLEAQIHALETQIEAFKVSEEKLTKK 315
Cdd:COG1842 57 ERQLEELEAEAEKWEEKAR------LALEKGREDLAREA----------LERKAELEAQAEALEAQLAQLEEQVEKLKEA 120
|
90 100 110
....*....|....*....|....*....|
gi 1958766038 316 LRTTEITLESLKQQLVELHHSESLQRAREQ 345
Cdd:COG1842 121 LRQLESKLEELKAKKDTLKARAKAAKAQEK 150
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
234-448 |
3.83e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 234 AKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLT 313
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 314 KKLRTTEitlESLKQQLVELH------------HSESLQRArEQHESVVAGLTQKYEEQVSCLQKNLDtTITALQEQVTw 381
Cdd:COG4942 97 AELEAQK---EELAELLRALYrlgrqpplalllSPEDFLDA-VRRLQYLKYLAPARREQAEELRADLA-ELAALRAELE- 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766038 382 fpmsncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQS 448
Cdd:COG4942 171 ----------------AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
553-1061 |
7.57e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.25 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 553 KLKTQVQRLLSSNSMKRHLVSELQrdlrdcrETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNE 632
Cdd:pfam05483 276 KTKLQDENLKELIEKKDHLTKELE-------DIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHS 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 633 VEVLQQQN-----QELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQ 707
Cdd:pfam05483 349 FVVTEFEAttcslEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 708 HLSEVYEGTQSQLRSDLDKLNKEV----------AAVQECYLEVCRE-KDELESTLRKTMEKAQEQTRQLLEDRE--EHV 774
Cdd:pfam05483 429 KIAEELKGKEQELIFLLQAREKEIhdleiqltaiKTSEEHYLKEVEDlKTELEKEKLKNIELTAHCDKLLLENKEltQEA 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 775 RKLKLELEERYQETLKAEKQswlkaqaagatqvehesRQKLIQQLE--EEWQSKLNHSLPARRKatsDCGSQTDQAAYPA 852
Cdd:pfam05483 509 SDMTLELKKHQEDIINCKKQ-----------------EERMLKQIEnlEEKEMNLRDELESVRE---EFIQKGDEVKCKL 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 853 AMPNAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQkvetavqnarsrwilelpmlaEYKALLRAQQQE 932
Cdd:pfam05483 569 DKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQ---------------------ENKALKKKGSAE 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 933 wAKQQEV--AVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIH--------------SLQKELELKDEEVPVAVR 996
Cdd:pfam05483 628 -NKQLNAyeIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLeevekakaiadeavKLQKEIDKRCQHKIAEMV 706
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958766038 997 AELAKARNEWNKEKQEE-----IHKIQEQNEEDYRQFLEDHRNKI-NEVLTAAKEDFVKQKTELLLQKETE 1061
Cdd:pfam05483 707 ALMEKHKHQYDKIIEERdselgLYKNKEQEQSSAKAALEIELSNIkAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
288-946 |
7.84e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 288 EMQLEAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRAreqhesvvAGLTQKYEEQVSCLQKN 367
Cdd:TIGR00618 207 TLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQL--------LKQLRARIEELRAQEAV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 368 LDTTITALQEQVTWFPMSNCQwSKVGYFVLSEEDVCTRLKDHVQQLE--RNQEAVRLEKTELINRLTRSLEDSQKQCAHL 445
Cdd:TIGR00618 279 LEETQERINRARKAAPLAAHI-KAVTQIEQQAQRIHTELQSKMRSRAklLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHI 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 446 LQSGSVHEVTQLQLQLQQAQKAHIlsesmnKALQEELTGLKEEISLyeSAAELGVLPGDVEGDLSVELTESCVglgiknv 525
Cdd:TIGR00618 358 RDAHEVATSIREISCQQHTLTQHI------HTLQQQKTTLTQKLQS--LCKELDILQREQATIDTRTSAFRDL------- 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 526 swKQSKANSVAQQEPPNEKLSKDEVILKLKTQVQRllssnsMKRHLVSELQRDLRDCRETMEALQQ--SKDSDRGMETKT 603
Cdd:TIGR00618 423 --QGQLAHAKKQQELQQRYAELCAAAITCTAQCEK------LEKIHLQESAQSLKEREQQLQTKEQihLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 604 ETSEKTTNQLWL--------------DSPEAINREdILRLKNEVEVLQQ--------------QNQELKEAEEKLRSTNQ 655
Cdd:TIGR00618 495 RLLELQEEPCPLcgscihpnparqdiDNPGPLTRR-MQRGEQTYAQLETseedvyhqltserkQRASLKEQMQEIQQSFS 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 656 DLCNQMRQMVQEFDHDKQEAVD-RCERTYQQHHEAMKAQIRESLLAK--HAAEKQHLSeVYEGTQSQlrsdldKLNKEVA 732
Cdd:TIGR00618 574 ILTQCDNRSKEDIPNLQNITVRlQDLTEKLSEAEDMLACEQHALLRKlqPEQDLQDVR-LHLQQCSQ------ELALKLT 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 733 AVQECYLEVCREKDELESTLRKTMEKAQEQTRQLLEDREEH-VRKLKLELE------ERYQETLKAEKQSWLKAQAagAT 805
Cdd:TIGR00618 647 ALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSeKEQLTYWKEmlaqcqTLLRELETHIEEYDREFNE--IE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 806 QVEHESRQKLIQQLE--EEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQEKELTVKEALR 883
Cdd:TIGR00618 725 NASSSLGSDLAAREDalNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTL 804
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958766038 884 KSEVELELKY--------CESIAQKVETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLS 946
Cdd:TIGR00618 805 EAEIGQEIPSdedilnlqCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
572-855 |
8.98e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 8.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 572 VSELQRDLRDCRETMEALQQSKDSD-RGMETKTE-TSEKTTNQLWLDSPEAINRE-DILRLKNEVEVLQQQNQELKEAEE 648
Cdd:pfam17380 284 VSERQQQEKFEKMEQERLRQEKEEKaREVERRRKlEEAEKARQAEMDRQAAIYAEqERMAMERERELERIRQEERKRELE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 649 KLRstNQDLCNQMRQMvQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRS-DLDKL 727
Cdd:pfam17380 364 RIR--QEEIAMEISRM-RELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQrEVRRL 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766038 728 NKEVAAVQE----------CYLEVCREKDELESTLRKTMEK-------AQEQTRQLLEdREEHVRKLKLELEERYQETLK 790
Cdd:pfam17380 441 EEERAREMErvrleeqerqQQVERLRQQEEERKRKKLELEKekrdrkrAEEQRRKILE-KELEERKQAMIEEERKRKLLE 519
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766038 791 ----------AEKQSWLKAQAAGATQVEHESRQKLIQQLEE--EWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMP 855
Cdd:pfam17380 520 kemeerqkaiYEEERRREAEEERRKQQEMEERRRIQEQMRKatEERSRLEAMEREREMMRQIVESEKARAEYEATTP 596
|
|
| |
