|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
411-863 |
1.48e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 411 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfdHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQ 490
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 491 SQLRSDLDKLNKEVAAVQECYL----EVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLElEERYQETLKAEK 566
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAkkkaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAE-EKKKADEAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 567 QSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPA--AMPNAEALVLAEE--QAHQ 642
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAdeAKKAAEAKKKADEakKAEE 1520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 643 VQQEKELTVKEALRKSEvelELKYCESI--AQKVETA--VQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRL 718
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKAD---EAKKAEEKkkADELKKAeeLKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 719 SLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNE--- 795
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKkka 1677
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958766052 796 EDYRQFLEDHRNKINEVLTAAKEdfvKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEE 863
Cdd:PTZ00121 1678 EEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
396-885 |
2.48e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 2.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 396 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKH 475
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 476 AAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRkTMEKAQEQTRQLLEDREEHVRKLKLELE 555
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL-EALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 556 ERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLPARRKATSDCGSQTDQAAYPAAmpNAEALVL 635
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAELLEEAALLEAALAELLEELA--EAAARLL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 636 AEEQAHQVQQEKELTVKEALRKSE---VELELKYCESIAQKVETAVQNARSRWILELPMLAEYKAllrAQQQEWAKQQEV 712
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGlrgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA---AAAIEYLKAAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 713 AVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIH---- 788
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevtl 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 789 --KIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEEDIL 866
Cdd:COG1196 652 egEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
490
....*....|....*....
gi 1958766052 867 TVLDFLLRDTQLEYDGDSQ 885
Cdd:COG1196 732 AEREELLEELLEEEELLEE 750
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
395-864 |
5.25e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 5.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 395 NREDILRLKNEVEVLQQQNQELKEAEEKLRStnqDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKA--------- 465
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKA---DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeakkkaee 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 466 -QIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELEST---LRKTME---KAQEQTRQ 538
Cdd:PTZ00121 1327 aKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKaeeKKKADEakkKAEEDKKK 1406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 539 LLE-DREEHVRKLKLELEERYQETLKAE----------KQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPAR 607
Cdd:PTZ00121 1407 ADElKKAAAAKKKADEAKKKAEEKKKADeakkkaeeakKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 608 --RKATSDCGSQTDQAAYPA-AMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEVEL---ELKYCESI-----AQKV 674
Cdd:PTZ00121 1487 eaKKKAEEAKKKADEAKKAAeAKKKADEAKKAEEakKADEAKKAEEAKKADEAKKAEEKKkadELKKAEELkkaeeKKKA 1566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 675 ETAvQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSE----LQNMKPNVASVQELEEKi 750
Cdd:PTZ00121 1567 EEA-KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEelkkAEEEKKKVEQLKKKEAE- 1644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 751 hSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFL--EDHRNKINEVLTAAKEDfvKQKTELL 828
Cdd:PTZ00121 1645 -EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEE--KKKAEEL 1721
|
490 500 510
....*....|....*....|....*....|....*.
gi 1958766052 829 LQKETEFQACLDQSRKEwtlQEAQRTQLEVHRYEED 864
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKE---AEEDKKKAEEAKKDEE 1754
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
417-1078 |
8.27e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 8.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 417 KEAEEKLRSTNQ------DLCNQMRQMVQEFDHDKQEAvdrceRTYQqhheAMKAQIRESLLAKHAAEKQHLSEVYEGTQ 490
Cdd:COG1196 175 EEAERKLEATEEnlerleDILGELERQLEPLERQAEKA-----ERYR----ELKEELKELEAELLLLKLRELEAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 491 SQLRSDLDKLNKEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWL 570
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELE-ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 571 KAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLPARRKAtsdcgsqtdqaaypaampnAEALVLAEEQAHQVQQEKELT 650
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEA-EEELEEAEAELAEA-------------------EEALLEAEAELAEAEEELEEL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 651 VKEALRKSEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKwk 730
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLER-------LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE-- 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 731 selqnmkpnvASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWnkekqeeihkIQEQNEEDYRQFLEDHRNKIN 810
Cdd:COG1196 456 ----------EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL----------LLLEAEADYEGFLEGVKAALL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 811 EVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEEDILTVLDFLLRDTQLEYDGDSQGKQLL 890
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 891 EVMSVCSskwtSVQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKTSADAVSWNTGQGDSGVPAPLpvSTSGPCAQ 970
Cdd:COG1196 596 AIGAAVD----LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS--LTGGSRRE 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 971 SSALLEAEAETDKKIFEmkdlccghcfQELEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRVVEELIEEN 1050
Cdd:COG1196 670 LLAALLEAEAELEELAE----------RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
650 660
....*....|....*....|....*...
gi 1958766052 1051 HDMKNKLETLRALCRTPPQSLSAGAAES 1078
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
411-823 |
8.39e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 8.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 411 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTYQQHHEAMKAQI---RESLLAKHAAEKQHLSEVYE 487
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEE-KKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKK 1438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 488 GTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTME---------KAQEQTRQLLEDREEHVRKLKLELEERY 558
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakkadeakkKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 559 QETLKAE--KQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMPNA---EAL 633
Cdd:PTZ00121 1519 EEAKKADeaKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEArieEVM 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 634 VLAEE----QAHQVQQEKELTVK-EALRKSEVELelKYCESIAQKVETAVQNArsrwilELPMLAEYKALLRAQQQEWAK 708
Cdd:PTZ00121 1599 KLYEEekkmKAEEAKKAEEAKIKaEELKKAEEEK--KKVEQLKKKEAEEKKKA------EELKKAEEENKIKAAEEAKKA 1670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 709 QQEVAVAHRLSLAlSEAKEKWKSELQNMKPNVASVQELEEKI-HSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEI 787
Cdd:PTZ00121 1671 EEDKKKAEEAKKA-EEDEKKAAEALKKEAEEAKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
410 420 430
....*....|....*....|....*....|....*.
gi 1958766052 788 HKiqEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQ 823
Cdd:PTZ00121 1750 KK--DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
8-758 |
8.87e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 8.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 8 KERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTK 87
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 88 KLRT-------TEITLESLKQQLVELH-HSESLQRAREQHESVVAGLTQKYEE-QVSCLQKNLDTTITALQEQVTwfpms 158
Cdd:TIGR02168 380 QLETlrskvaqLELQIASLNNEIERLEaRLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQE----- 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 159 ncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTEL---------INRLTRSLEDSQKQCAHLLQSGS----VH 225
Cdd:TIGR02168 455 ------------ELERLEEALEELREELEEAEQALDAAERELaqlqarldsLERLQENLEGFSEGVKALLKNQSglsgIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 226 EVTQLQLQLQQAQKAHI---LSESMNKALQEELTGLKEEISLYESAAE--LGVLPGDVEGDLSVeltescvglgiknvsw 300
Cdd:TIGR02168 523 GVLSELISVDEGYEAAIeaaLGGRLQAVVVENLNAAKKAIAFLKQNELgrVTFLPLDSIKGTEI---------------- 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 301 kQSKANSVAQQEPPNEKLSKDEVilKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRET-MEALQQSKDSD---RGMETKT 376
Cdd:TIGR02168 587 -QGNDREILKNIEGFLGVAKDLV--KFDPKLRKALSYLLGGVLVVDDLDNALELAKKLrPGYRIVTLDGDlvrPGGVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 377 ETSEKTTNQLWldspeaiNREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDhdkqeavdrcERTY 456
Cdd:TIGR02168 664 GSAKTNSSILE-------RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE----------ELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 457 QQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYlevcREKDELESTLRKTMEKAQEQT 536
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIEQLKEELKALR 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 537 RQLLEDREEHVrklklELEERYQEtlKAEKQSWLKAQAAgATQVEHESRQKLIQQLEEEwQSKLNHSLparrkatsdcgs 616
Cdd:TIGR02168 803 EALDELRAELT-----LLNEEAAN--LRERLESLERRIA-ATERRLEDLEEQIEELSED-IESLAAEI------------ 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 617 qtdqaaypaampnaealvlAEEQAHQVQQEKELTVKEALRKSeVELELKYCESIAQKVETAVQNARSRwilelpMLAEYK 696
Cdd:TIGR02168 862 -------------------EELEELIEELESELEALLNERAS-LEEALALLRSELEELSEELRELESK------RSELRR 915
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766052 697 ALLRAQQQEWAKQQEVAVAH-RLSLALSEAKEKWKSELQNMKPNVA----SVQELEEKIHSLQKELE 758
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEvRIDNLQERLSEEYSLTLEEAEALENkiedDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
6-811 |
1.58e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 6 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 85
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 86 TKKLRTTEITLESLKQQLVELhhSESLQRAREQHESV---VAGLTQKYEEQVScLQKNLDTTITALQEQVTWFPmsncqw 162
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDEL--AEELAELEEKLEELkeeLESLEAELEELEA-ELEELESRLEELEEQLETLR------ 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 163 SKVGYFVLSEEDV---CTRLKDHVQQLERNQEAVRLEKTELINRLTRS-LEDSQKQCAHLLQSgsvhEVTQLQLQLQQAQ 238
Cdd:TIGR02168 386 SKVAQLELQIASLnneIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEE----LEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 239 KAHILSESMNKALQEELTGLKEEISLYESAAELGVLPGDVEG---DLSVELTESCVGLGIKNVSWKQ-------SKANSV 308
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfseGVKALLKNQSGLSGILGVLSELisvdegyEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 309 AQQEPPNEKLSKDEVILKLktQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTN---Q 385
Cdd:TIGR02168 542 ALGGRLQAVVVENLNAAKK--AIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalS 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 386 LWL-------DSPEAIN---------------------------------------REDILRLKNEVEVLQQQNQELKEA 419
Cdd:TIGR02168 620 YLLggvlvvdDLDNALElakklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 420 EEKLRSTNQDLCNQMRQMVQEFDhdkqeavdrcERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDK 499
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELE----------ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 500 LNKEVAAVQECYlevcREKDELESTLRKTMEKAQEQTRQLLEDREEHVrklklELEERYQEtlKAEKQSWLKAQAAgATQ 579
Cdd:TIGR02168 770 LEEAEEELAEAE----AEIEELEAQIEQLKEELKALREALDELRAELT-----LLNEEAAN--LRERLESLERRIA-ATE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 580 VEHESRQKLIQQLEEEwQSKLNHSLPARRKATSDCGSQTDQA--AYPAAMPNAEALVLAEEQAHQVQQEKELTVKEA--- 654
Cdd:TIGR02168 838 RRLEDLEEQIEELSED-IESLAAEIEELEELIEELESELEALlnERASLEEALALLRSELEELSEELRELESKRSELrre 916
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 655 ---LRKSEVELELKyCESIAQKVETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQevavaHRLslalseakekwKS 731
Cdd:TIGR02168 917 leeLREKLAQLELR-LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL-----KRL-----------EN 979
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 732 ELQNMKP-NVASVQELEEkihsLQKELELKDEEvpvavRAELAKARnewnkEKQEEIhkIQEQNEEDYRQFLEDHrNKIN 810
Cdd:TIGR02168 980 KIKELGPvNLAAIEEYEE----LKERYDFLTAQ-----KEDLTEAK-----ETLEEA--IEEIDREARERFKDTF-DQVN 1042
|
.
gi 1958766052 811 E 811
Cdd:TIGR02168 1043 E 1043
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
516-864 |
2.89e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 516 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERyqETLKAEKQSWLKAQAAGATQVEHEsrQKLIQQLEEE 595
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDY--LKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 596 WQSKLNHSLparrkatsdcgsqtdqaaypaampNAEALVLAEEQAHQ--VQQEKELTVKEALRKSEVELELKYCESIAQK 673
Cdd:pfam02463 242 LQELLRDEQ------------------------EEIESSKQEIEKEEekLAQVLKENKEEEKEKKLQEEELKLLAKEEEE 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 674 VETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKekwKSELQNMKPNVASVQELEEKIHSL 753
Cdd:pfam02463 298 LKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK---REAEEEEEEELEKLQEKLEQLEEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 754 QKELELKDEEVPVAVRAELAKARNEWNKEKQE--EIHKIQEQNEEDYR---QFLEDHRNKINEVLTAAKEDFVKQKTELL 828
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEaqLLLELARQLEDLLKeekKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350
....*....|....*....|....*....|....*.
gi 1958766052 829 LQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEED 864
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
525-865 |
1.12e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 525 LRKTMEKAQEQTRQLLEDREEhvrkLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSklnhsl 604
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAE----LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ------ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 605 parrkatsdcgsqtdqaaypaampNAEALVLAEEQAHQVQQEKEltvKEALRKSEVELELKYCESIAQKVETAVQNARSR 684
Cdd:TIGR02168 752 ------------------------LSKELTELEAEIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 685 wILELPmlAEYKAL-LRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEE 763
Cdd:TIGR02168 805 -LDELR--AELTLLnEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 764 vpvavRAELAKARNEWNKEKQEEIHKIQEQNE-----EDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQAc 838
Cdd:TIGR02168 882 -----RASLEEALALLRSELEELSEELRELESkrselRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE- 955
|
330 340
....*....|....*....|....*..
gi 1958766052 839 lDQSRKEWTLQEAQRTQLEVHRYEEDI 865
Cdd:TIGR02168 956 -AEALENKIEDDEEEARRRLKRLENKI 981
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
516-863 |
2.16e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 2.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 516 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSwlkaQAAGATQVEHESRQKLIQQLEEE 595
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDAR----KAEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 596 WQSKLNHSLPARRKAtsDCGSQTDQAAYPAAMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEvelELKYCESIAQK 673
Cdd:PTZ00121 1164 RKAEEARKAEDAKKA--EAARKAEEVRKAEELRKAEDARKAEAarKAEEERKAEEARKAEDAKKAE---AVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 674 VETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVavahRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSL 753
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA----RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 754 QKELELKDEEVPVAVRAELAKARNEWNKEKQE-----------EIHKIQEQNEEDYRQfLEDHRNKINEVLTAAKE---- 818
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaeaeaaadEAEAAEEKAEAAEKK-KEEAKKKADAAKKKAEEkkka 1393
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1958766052 819 DFVKQKTELLLQKETEFQACLDQSRKEwtlQEAQRTQLEVHRYEE 863
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKKKA---DEAKKKAEEKKKADE 1435
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
491-843 |
2.71e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 491 SQLRSDLDKLNKEVAAVQEcYLEVCREKDELESTLR----KTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEK 566
Cdd:TIGR02169 194 DEKRQQLERLRREREKAER-YQALLKEKREYEGYELlkekEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 567 qswLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSlparRKATSDCGSQTDQAaypaampnAEALVLAEEQAHQVQQE 646
Cdd:TIGR02169 273 ---LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASL----ERSIAEKERELEDA--------EERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 647 KElTVKEALRKSEVELElkycesiaqKVETAVQNARsrwilelpmlAEYKALLRAQQQEWAKQQEVAVAHRlslALSEAK 726
Cdd:TIGR02169 338 IE-ELEREIEEERKRRD---------KLTEEYAELK----------EELEDLRAELEEVDKEFAETRDELK---DYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 727 EKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEevpvAVRAELAKARNEwNKEKQEEIHKIQEQNE------EDYRQ 800
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIA----GIEAKINELEEE-KEDKALEIKKQEWKLEqlaadlSKYEQ 469
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1958766052 801 FLEDHRNKINEVltaakEDFVKQKTELLLQKETEFQACLDQSR 843
Cdd:TIGR02169 470 ELYDLKEEYDRV-----EKELSKLQRELAEAEAQARASEERVR 507
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
400-1062 |
4.44e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 4.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 400 LRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTyqqhheAMKAQIRESLLAKHAaEK 479
Cdd:TIGR02168 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL------EELKEELESLEAELE-EL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 480 QHLSEVYEGTQSQLRSDLDKLNKEVAAVQEcylEVCREKDELEStLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQ 559
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLEL---QIASLNNEIER-LEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 560 ETLKAEKQSWLKAQAAGATQVEHESR-QKLIQQLEEEWQSKLN--HSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLA 636
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEElREELEEAEQALDAAERelAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 637 EE-----QAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRW-ILELPMLAEYKalLRAQQQEWAKQQ 710
Cdd:TIGR02168 520 GIlgvlsELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVtFLPLDSIKGTE--IQGNDREILKNI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 711 E--------------------------VAVAHRLSLALSEAKEKWKSEL------------------------------Q 734
Cdd:TIGR02168 598 EgflgvakdlvkfdpklrkalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsaktnssilerrR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 735 NMKPNVASVQELEEKIHSLQKEL-------ELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDHRN 807
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALaelrkelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 808 KINEVLTAAKEDFVKQKTEL--LLQKETEFQACLDQSRKEWTLQEAQRTQLevhryeEDILTVLDFLLRDTQLEYDGDSQ 885
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELaeAEAEIEELEAQIEQLKEELKALREALDEL------RAELTLLNEEAANLRERLESLER 831
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 886 GKQLLEVMSVCSSKwtsvqyfekvkacIHKALQDTLSLLIDNIASEREKRNVVKTSADAVSwntgqgdsgvpaplpVSTS 965
Cdd:TIGR02168 832 RIAATERRLEDLEE-------------QIEELSEDIESLAAEIEELEELIEELESELEALL---------------NERA 883
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 966 GPCAQSSALLEAEAETDKKIFEMKdlccghcfQELEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRVVEE 1045
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELE--------SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
730
....*....|....*..
gi 1958766052 1046 LIEENHDMKNKLETLRA 1062
Cdd:TIGR02168 956 AEALENKIEDDEEEARR 972
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
519-772 |
1.51e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 519 DELESTlRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEwqs 598
Cdd:COG4913 235 DDLERA-HEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAE--- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 599 klnhslparrkaTSDCGSQTDQAaypaampnAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKycESIAQKVETAV 678
Cdd:COG4913 311 ------------LERLEARLDAL--------REELDELEAQIRGNGGDRLEQLEREIERLERELEER--ERRRARLEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 679 QNARSRWILELPMLAEYKALLRAQQQEWAK-----QQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASV-QELEEKIHS 752
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEelealEEALAEAEAALRDLRRELRELEAEIASLERRKSNIpARLLALRDA 448
|
250 260
....*....|....*....|
gi 1958766052 753 LQKELELKDEEVPVAvrAEL 772
Cdd:COG4913 449 LAEALGLDEAELPFV--GEL 466
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
6-271 |
2.31e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 6 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 85
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 86 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKYEEQVSCLQKNLDTTITALQEQvtwfpmsncqwsk 164
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEElEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL------------- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 165 vgyfvLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLtRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILS 244
Cdd:COG1196 389 -----LEALRAAAELAAQLEELEEAEEALLERLERLEEEL-EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260
....*....|....*....|....*..
gi 1958766052 245 ESMNKALQEELTGLKEEISLYESAAEL 271
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEA 489
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
409-880 |
4.71e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 4.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 409 LQQQNQELKEAEEKLRStnqdlCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEvyeg 488
Cdd:COG4717 73 LKELEEELKEAEEKEEE-----YAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE---- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 489 tqsqLRSDLDKLNKEVAAVQEcyleVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEE--RYQETLKAEK 566
Cdd:COG4717 144 ----LPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEElqQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 567 QSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPArrkATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQE 646
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIA---AALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 647 KELTVKEALRKSEVELELKYCESIAQKvetAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAK 726
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEE---ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 727 EKWKSELQNMkpNVASVQELEEKIHSLQKELELkdeevpvavRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDHR 806
Cdd:COG4717 370 QEIAALLAEA--GVEDEEELRAALEQAEEYQEL---------KEELEELEEQLEELLGELEELLEALDEEELEEELEELE 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 807 NKINEvltaakedfVKQKTELLLQKETEFQACLDQSRKEWTLQEA----QRTQLEVHRYEED--ILTVLDFLLRDTQLEY 880
Cdd:COG4717 439 EELEE---------LEEELEELREELAELEAELEQLEEDGELAELlqelEELKAELRELAEEwaALKLALELLEEAREEY 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
397-1169 |
5.10e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 5.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 397 EDILR-LKNEVEVLQQQnqelKEAEEKLRstnqdlcnqmRQMVQEFDHDKQEAVDRCERtYQQHHEAMKAQIRE--SLLA 473
Cdd:TIGR02168 192 EDILNeLERQLKSLERQ----AEKAERYK----------ELKAELRELELALLVLRLEE-LREELEELQEELKEaeEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 474 KHAAEKQhlseVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQ--EQTRQLLEDREEHVRKLK 551
Cdd:TIGR02168 257 ELTAELQ----ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAnlERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 552 LELEERYQEtLKAEKQSwLKAQAAGAtQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAypaampnae 631
Cdd:TIGR02168 333 DELAEELAE-LEEKLEE-LKEELESL-EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN--------- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 632 ALVLAEEQAHQVQ--QEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQ 709
Cdd:TIGR02168 401 EIERLEARLERLEdrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 710 QEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEW---NKEKQEE 786
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVvveNLNAAKK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 787 IHKIQEQNEEDYRQFLE-----DHRNKINEVLTAAKEDFVKQKTELLLQKETEFQAC----LDQSRKEWTLQEAQRtQLE 857
Cdd:TIGR02168 561 AIAFLKQNELGRVTFLPldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsylLGGVLVVDDLDNALE-LAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 858 VHRYEEDILTVLDFLLRDTQLEYDGDSQGKQ-LLEVMSVCSSKWTSVQYFEKVKACIHKALQDTLSLLiDNIASEREKRN 936
Cdd:TIGR02168 640 KLRPGYRIVTLDGDLVRPGGVITGGSAKTNSsILERRREIEELEEKIEELEEKIAELEKALAELRKEL-EELEEELEQLR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 937 VVKTSADAVSWNTGQGDSGVPAplpvsTSGPCAQSSALLEAEAETDKKIFEMKDLCCGHCFQELEKEKQECQDLRRKLEK 1016
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEA-----EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 1017 SRRHLQHLERTHKATVEKLGEENSRV------VEELIEENHDMKNKLETLRALCRTPPQSLSAGAAESARLlcsGQALEE 1090
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEEAanlrerLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL---EELIEE 870
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958766052 1091 LRGQyIKAVKKIKRDMLRYIQESKERATEMvkAEVLRERQDTARKMHKYYLSCLQQILEDNGKEEGAEKKIMSAASKLA 1169
Cdd:TIGR02168 871 LESE-LEALLNERASLEEALALLRSELEEL--SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
301-886 |
1.38e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 301 KQSKANSVAQQEPPNEKLSKDEVILKLKTQVQRLlsSNSMKRHLVSELQRDLRDCRETMEALQQS-----KDSDRGMETK 375
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRARKAAPLAAHIKAvtqieQQAQRIHTEL 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 376 TETSEKTTNQLWLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQ------MRQMVQEFDHDKQEAV 449
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQhtltqhIHTLQQQKTTLTQKLQ 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 450 DRCERTYQQHHEAMKAqirESLLAKHAAEKQHLSEVYEGTQSQLRSdldKLNKEVAAVQECYLEVCREKDELESTLRKTM 529
Cdd:TIGR00618 397 SLCKELDILQREQATI---DTRTSAFRDLQGQLAHAKKQQELQQRY---AELCAAAITCTAQCEKLEKIHLQESAQSLKE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 530 EKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQ------SKLNHS 603
Cdd:TIGR00618 471 REQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAqletseEDVYHQ 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 604 LPARRKATSDCGSQTdQAAYPAAMPNAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKyCESIAQKVETAVQNARS 683
Cdd:TIGR00618 551 LTSERKQRASLKEQM-QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA-CEQHALLRKLQPEQDLQ 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 684 RWILELpmlaeykallRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEE 763
Cdd:TIGR00618 629 DVRLHL----------QQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 764 VP---------VAVRAELAKARNEWNKEKQEEIHKIQeQNEEDYRQFLEDHRNKINEVLTA-AKEDFVKQKTEL----LL 829
Cdd:TIGR00618 699 LAqcqtllrelETHIEEYDREFNEIENASSSLGSDLA-AREDALNQSLKELMHQARTVLKArTEAHFNNNEEVTaalqTG 777
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958766052 830 QKETEFQACLDQSRKEW-TLQEAQRTQLEVHRYE----EDILTVLDFLLR------DTQLEYDGDSQG 886
Cdd:TIGR00618 778 AELSHLAAEIQFFNRLReEDTHLLKTLEAEIGQEipsdEDILNLQCETLVqeeeqfLSRLEEKSATLG 845
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
6-595 |
2.40e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 6 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 85
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 86 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKY---EEQVSCLQKNLDTTITALQEQVTwfpmsncq 161
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEEElAELEEELEELEEELEELEEELeeaEEELEEAEAELAEAEEALLEAEA-------- 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 162 wskvgyfvlSEEDVCTRLKDHVQQLERNQEAvRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAH 241
Cdd:COG1196 373 ---------ELAEAEEELEELAEELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 242 ILSESMNKALQEELTGLKEEISLYESAAELgvlpgdvegdlsvELTESCVGLGIKNVSWKQSKANSVAQQEPPNEKLSKD 321
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEA-------------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 322 EVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILR 401
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 402 LKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQH 481
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 482 LSEVYEGTQSQLRSDLDKLNKEVAAVqecylevcREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQET 561
Cdd:COG1196 670 LLAALLEAEAELEELAERLAEEELEL--------EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590
....*....|....*....|....*....|....
gi 1958766052 562 LKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEE 595
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
316-758 |
2.70e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 316 EKLSKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLwldspEAIN 395
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER-----LERL 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 396 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAkh 475
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL-- 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 476 AAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEV-----CREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKL 550
Cdd:COG1196 498 EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFL 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 551 KLELEERYQETLKAEKQSWLKAQAAGAT--QVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAypaAMP 628
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVAsdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL---EGE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 629 NAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWAK 708
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA-------EAEEERLEEELEEEALE 727
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1958766052 709 QQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELE 758
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
415-785 |
3.80e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 415 ELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQ---EAVDRCERTYQQHHEAMKAQirESLLAKHAAEKQHLSEvyegtqs 491
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENrldELSQELSDASRKIGEIEKEI--EQLEQEEEKLKERLEE------- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 492 qLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQEtlkaekqswLK 571
Cdd:TIGR02169 742 -LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR---------IE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 572 AQAAgATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMpnaeALVLAEEQAHQVQQEKELTV 651
Cdd:TIGR02169 812 ARLR-EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL----EEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 652 KEALRKsEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWA------KQQEVAVAHRLSLA-LSE 724
Cdd:TIGR02169 887 LKKERD-ELEAQLRELERKIEELEAQIEKKRKR-------LSELKAKLEALEEELSeiedpkGEDEEIPEEELSLEdVQA 958
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766052 725 AKEKWKSELQNMKP-NVASVQELEEkihSLQKELELKDE-EVPVAVRAELAKARNEWNKEKQE 785
Cdd:TIGR02169 959 ELQRVEEEIRALEPvNMLAIQEYEE---VLKRLDELKEKrAKLEEERKAILERIEEYEKKKRE 1018
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
50-834 |
8.08e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 8.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 50 SQKLFQSGKEREMQLEAQIHALETQIEafkvSEEKLTKKlrtTEITLESLKQQLVELHHSESLQRAREQHESVVAGLTQK 129
Cdd:TIGR00606 208 ELKYLKQYKEKACEIRDQITSKEAQLE----SSREIVKS---YENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQ 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 130 YEEQVSCLQKNLDTTITALQEQVtwfpmsNCQWSKVGYFVLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTR-SL 208
Cdd:TIGR00606 281 MEKDNSELELKMEKVFQGTDEQL------NDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRlQL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 209 EDSQKQCAHLLQSgsvhevtqlqlqlqqaqkahilSESMNKALQEELTGLKeeislyesaaelgvlpgdvEGDLSVELTE 288
Cdd:TIGR00606 355 QADRHQEHIRARD----------------------SLIQSLATRLELDGFE-------------------RGPFSERQIK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 289 SCVGLGIKNVSWKQSKANSVAQQEPPNEKLsKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDS 368
Cdd:TIGR00606 394 NFHTLVIERQEDEAKTAAQLCADLQSKERL-KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 369 DRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNE-VEVLQQQNQELKEAEEKLRSTnqdlcnQMRQMVQEFDHDKQE 447
Cdd:TIGR00606 473 ILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHT------TTRTQMEMLTKDKMD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 448 AVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHlseVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRK 527
Cdd:TIGR00606 547 KDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLH---SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSS 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 528 TMEKAQEQTRQllEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHES----------RQKLIQQLEEEWQ 597
Cdd:TIGR00606 624 YEDKLFDVCGS--QDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpvcqrvfqTEAELQEFISDLQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 598 SKLnHSLPARRKATSDCGSQTDQAaypaampNAEALVLAEEQAHQVQ-QEKEL-TVKEALR---------KSEVELELKY 666
Cdd:TIGR00606 702 SKL-RLAPDKLKSTESELKKKEKR-------RDEMLGLAPGRQSIIDlKEKEIpELRNKLQkvnrdiqrlKNDIEEQETL 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 667 CESIAQKVETAVQNARSRWILElPMLAEYKALLRAQQQEWAKQQEVAVA---HRLSLALSEAKEKWKSELQNMKPNVASV 743
Cdd:TIGR00606 774 LGTIMPEEESAKVCLTDVTIME-RFQMELKDVERKIAQQAAKLQGSDLDrtvQQVNQEKQEKQHELDTVVSKIELNRKLI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 744 QELEEKIHSLQKEL-ELKDEEVPVAVRAELAKARNEWNKEKQEEihkIQEQNEEdyrqfLEDHRNKINEvLTAAKEDFVK 822
Cdd:TIGR00606 853 QDQQEQIQHLKSKTnELKSEKLQIGTNLQRRQQFEEQLVELSTE---VQSLIRE-----IKDAKEQDSP-LETFLEKDQQ 923
|
810
....*....|..
gi 1958766052 823 QKTELLLQKETE 834
Cdd:TIGR00606 924 EKEELISSKETS 935
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
409-637 |
8.38e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 409 LQQQNQELKEAEEKLrSTNQDLCNQMRQMVQEFdhdkQEAVDRCERtyQQHHEAMKAQIRESLLAKHAAE-----KQHLS 483
Cdd:COG3096 450 EQQATEEVLELEQKL-SVADAARRQFEKAYELV----CKIAGEVER--SQAWQTARELLRRYRSQQALAQrlqqlRAQLA 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 484 EV--YEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLrktmEKAQEQTRQLLEDREEHVRKLKlELEERYQEt 561
Cdd:COG3096 523 ELeqRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQL----EELEEQAAEAVEQRSELRQQLE-QLRARIKE- 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 562 LKAEKQSWLKAQAAGATQVEH-----ESRQKLI----QQLEEEWQSKLNHSLPARRKATSDcgSQTDQAAYPAAMPNAEA 632
Cdd:COG3096 597 LAARAPAWLAAQDALERLREQsgealADSQEVTaamqQLLEREREATVERDELAARKQALE--SQIERLSQPGGAEDPRL 674
|
....*
gi 1958766052 633 LVLAE 637
Cdd:COG3096 675 LALAE 679
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
6-210 |
9.96e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 9.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 6 KAKERQLDSLVEKLNDRERQIRYLnhqllivQDEKDGLALSLRESQKLFQSGKERE--MQLEAQIHALETQIEAfkvsee 83
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELER------ 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 84 kltkkLRTTEITLESLKQQLvelhhsESLQRAREQHESVVAGLTQKYEEQVSCLqKNLDTTITALQEQVTWFPMSNCQWS 163
Cdd:COG4913 680 -----LDASSDDLAALEEQL------EELEAELEELEEELDELKGEIGRLEKEL-EQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958766052 164 kVGYF--VLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLED 210
Cdd:COG4913 748 -RALLeeRFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
9-595 |
1.12e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 9 ERQLDSLvEKlnDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTKK 88
Cdd:COG1196 199 ERQLEPL-ER--QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 89 LRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTQKYEEQVSclqknLDTTITALQEQvtwfpmsncqwskvgyf 168
Cdd:COG1196 276 LEELELELEEAQAEEYEL--LAELARLEQDIARLEERRRELEERLEE-----LEEELAELEEE----------------- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 169 VLSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQcAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMN 248
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 249 KALQEELTGLKEEISLYESAAELGVLPGDVEGDLSVELTescvglgiknvswkqskansvaqqeppnEKLSKDEVILKLK 328
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE----------------------------EEAELEEEEEALL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 329 TQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVE- 407
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEa 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 408 ----VLQQQNQELKEAEEKLRSTNQDLcnqmRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLS 483
Cdd:COG1196 543 alaaALQNIVVEDDEVAAAAIEYLKAA----KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 484 EVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTRQLLEDREEhvRKLKLELEERYQETLK 563
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE--LEELAERLAEEELELE 696
|
570 580 590
....*....|....*....|....*....|..
gi 1958766052 564 AEKQSWLKAQAAGATQVEHESRQKLIQQLEEE 595
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2-595 |
1.19e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 2 KVLNKaKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEremqleaQIHALETQIEAFKVS 81
Cdd:TIGR04523 61 KNLNK-DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE-------QKNKLEVELNKLEKQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 82 EEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTqKYEEQVSCLQKNLDTtiTALQEQVTWFPMSNCQ 161
Cdd:TIGR04523 133 KKENKKNIDKFLTEIKKKEKELEKL--NNKYNDLKKQKEELENELN-LLEKEKLNIQKNIDK--IKNKLLKLELLLSNLK 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 162 WSKVGYFVLSEEdvCTRLKDHVQQLERNQEavrlEKTELINRLTRSLEDSQKQCAHLLQSgSVHEVTQLQLQLQQAQKAH 241
Cdd:TIGR04523 208 KKIQKNKSLESQ--ISELKKQNNQLKDNIE----KKQQEINEKTTEISNTQTQLNQLKDE-QNKIKKQLSEKQKELEQNN 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 242 ILSESMNKALQEeltgLKEEISlyesaaelgVLPGDVEGDLSVELTEScvglgIKNVswKQSKANSVAQQEPPNEKLSK- 320
Cdd:TIGR04523 281 KKIKELEKQLNQ----LKSEIS---------DLNNQKEQDWNKELKSE-----LKNQ--EKKLEEIQNQISQNNKIISQl 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 321 DEVILKLKTQVQRLLSSNsmkrhlvSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLwLDSPEAINREdil 400
Cdd:TIGR04523 341 NEQISQLKKELTNSESEN-------SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK-IQNQEKLNQQ--- 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 401 rLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTYQQhheaMKAQIrESLLAKHAAEKQ 480
Cdd:TIGR04523 410 -KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRES----LETQL-KVLSRSINKIKQ 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 481 HLsevyEGTQSQLR---SDLDKLNKEVAAVQECYLEVCREKDELESTLRKtMEKAQEQTRQLLEDREEHVRKLKLELEER 557
Cdd:TIGR04523 483 NL----EQKQKELKskeKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK-LESEKKEKESKISDLEDELNKDDFELKKE 557
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1958766052 558 YQETLKAEKQSWLKA--QAAGATQVEHESRQKLIQQLEEE 595
Cdd:TIGR04523 558 NLEKEIDEKNKEIEElkQTQKSLKKKQEEKQELIDQKEKE 597
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
409-595 |
1.61e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 409 LQQQNQELKEAEEKLRSTNQDLcNQMRQMVQEFDHDKQEAvdrcertyQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEG 488
Cdd:COG4942 57 LAALERRIAALARRIRALEQEL-AALEAELAELEKEIAEL--------RAELEAQKEELAELLRALYRLGRQPPLALLLS 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 489 TQS--QLRSDLDKLNKEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEK 566
Cdd:COG4942 128 PEDflDAVRRLQYLKYLAPARREQAEELRADLAELA-ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEK 206
|
170 180
....*....|....*....|....*....
gi 1958766052 567 QSWLKAQAAGATQVEHESRQKLIQQLEEE 595
Cdd:COG4942 207 ELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
396-594 |
2.13e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 396 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLcnqmrQMVQEFDHDKQEaVDRCERTYQQHhEAMKAQIRESLLAKH 475
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREAL-----QRLAEYSWDEID-VASAEREIAEL-EAELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 476 AAEKQhlsevyegtQSQLRSDLDKLNKEVAAVQecylevcREKDELESTLrKTMEKAQEQTRQLLEDREEHVRK-LKLEL 554
Cdd:COG4913 689 ALEEQ---------LEELEAELEELEEELDELK-------GEIGRLEKEL-EQAEEELDELQDRLEAAEDLARLeLRALL 751
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958766052 555 EERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEE 594
Cdd:COG4913 752 EERFAAALGDAVERELRENLEERIDALRARLNRAEEELER 791
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
304-424 |
2.35e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 304 KANSVAQQEPPNEKLSKDEVILKLKTQVQRLlssnsmkRHLVSELQRDLRDCRETMEALQQSKDSDRgmetktetseKTT 383
Cdd:COG2433 395 PEAEREKEHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAELEEKDERIERLERELSEAR----------SEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958766052 384 NQLWLDSPEAINRE-DILRLKNEVEVLQQQNQELKEAEEKLR 424
Cdd:COG2433 458 RREIRKDREISRLDrEIERLERELEEERERIEELKRKLERLK 499
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
7-132 |
2.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 7 AKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRE-SQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 85
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1958766052 86 TKKLRTTEITLESLKQQLVELHhsESLQRAREQHESVVAGLTQKYEE 132
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALR--AEAAALLEALEEELEALEEALAE 409
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
395-1164 |
2.75e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 395 NREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCErtyQQHHEAMKAQIRESLLAK 474
Cdd:pfam02463 214 QLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLK---ENKEEEKEKKLQEEELKL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 475 HAAEKQHLSEVYEGTQSQLRSDLDKLN----------KEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDRE 544
Cdd:pfam02463 291 LAKEEEELKSELLKLERRKVDDEEKLKesekekkkaeKELKKEKEEIEELEKELKELE-IKREAEEEEEEELEKLQEKLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 545 EHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDcgSQTDQAayP 624
Cdd:pfam02463 370 QLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES--IELKQG--K 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 625 AAMPNAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSrwilelpMLAEYKALLRAQQQ 704
Cdd:pfam02463 446 LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESK-------ARSGLKVLLALIKD 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 705 EWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKarnewnkeKQ 784
Cdd:pfam02463 519 GVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLK--------LP 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 785 EEIHKIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEED 864
Cdd:pfam02463 591 LKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 865 ILTVLDFLLRDTQLEYDGDSQGKQLLEVMSVCSSKWTSVQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKTSADA 944
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 945 VSWNTGQGDSGVPAPLPvstsgpcAQSSALLEAEAETDKKIFEMKDLCCGHCFQELEKEKQECQDLRRKLEKSRRHLQHL 1024
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKS-------ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 1025 ERTHKATVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTppqslsagAAESARLLCSGQALEELRGQYIKAVKKIKR 1104
Cdd:pfam02463 824 IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITK--------EELLQELLLKEEELEEQKLKDELESKEEKE 895
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766052 1105 DMLRYIQESKERATEMVKAEVLRERQDTARKMHKYYLSCLQQI---LEDNGKEEGAEKKIMSA 1164
Cdd:pfam02463 896 KEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEellLEEADEKEKEENNKEEE 958
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
468-813 |
3.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 468 RESLLAKHAAEKQHLSEVYEgTQSQLRSDLDKLNKEVAAVQECyLEVCREKDELEStLRKTMEKAQEQTRQLLEDREEhV 547
Cdd:COG4913 612 LAALEAELAELEEELAEAEE-RLEALEAELDALQERREALQRL-AEYSWDEIDVAS-AEREIAELEAELERLDASSDD-L 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 548 RKLKLELEEryqetLKAEKQswlkaqaagATQVEHESRQKLIQQLEEEWQSklnhslparrkatsdcgsqtdqaaypaam 627
Cdd:COG4913 688 AALEEQLEE-----LEAELE---------ELEEELDELKGEIGRLEKELEQ----------------------------- 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 628 pnaealvlAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNArsrwilelpmlaeykalLRAQQQEWA 707
Cdd:COG4913 725 --------AEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN-----------------LEERIDALR 779
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 708 KQQEVAvAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHslqkelELKDEEVPvAVRAELAKARNEWNKEKQEEI 787
Cdd:COG4913 780 ARLNRA-EEELERAMRAFNREWPAETADLDADLESLPEYLALLD------RLEEDGLP-EYEERFKELLNENSIEFVADL 851
|
330 340
....*....|....*....|....*..
gi 1958766052 788 -HKIQEQNEEDYRQFledhrNKINEVL 813
Cdd:COG4913 852 lSKLRRAIREIKERI-----DPLNDSL 873
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
973-1170 |
3.98e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 973 ALLEAEAETDKKIFEMKDlccghcfqELEKEKQEC-QDLRRKleksRRHLQHLERT---HKATVEKLGEENSRVVEELIE 1048
Cdd:PRK12704 47 AKKEAEAIKKEALLEAKE--------EIHKLRNEFeKELRER----RNELQKLEKRllqKEENLDRKLELLEKREEELEK 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 1049 ENHDMKNKLETLralcrtppqslsagaaesarllcsgqalEELRGQYIKAVKKIKRDMLRYIQESKERATEMVKAEVLRE 1128
Cdd:PRK12704 115 KEKELEQKQQEL----------------------------EKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958766052 1129 -RQDTARKMHKYylsclqqilEDNGKEEG---AEKKIMSAASKLAT 1170
Cdd:PRK12704 167 aRHEAAVLIKEI---------EEEAKEEAdkkAKEILAQAIQRCAA 203
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
48-565 |
4.43e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 48 RESQKLF-QSGKEREMQLEaQIHALETQIEAFKVSEE---KLTKKLRTTEITLESLKQQLVEL-HHSESLQRAREQHESV 122
Cdd:COG4717 53 KEADELFkPQGRKPELNLK-ELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELrEELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 123 --VAGLTQKYEEQVSCLQKnLDTTITALQEQVTwfpmsncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTEL 200
Cdd:COG4717 132 qeLEALEAELAELPERLEE-LEERLEELRELEE-----------------ELEELEAELAELQEELEELLEQLSLATEEE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 201 INRLTRSLEDSQKQCAHLlqsgsvHEVTQLQLQLQQAQKAHILSESMNKALQEELTGLKEEISLYESAAELGVLPGDVEG 280
Cdd:COG4717 194 LQDLAEELEELQQRLAEL------EEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 281 DLSVELTE-----SCVGLGIKNVSWKQSKANSVAQQEPPNEKLSKDEVI--LKLKTQVQRLLSSNSMKRHLVSELQRDLR 353
Cdd:COG4717 268 LLSLILTIagvlfLVLGLLALLFLLLAREKASLGKEAEELQALPALEELeeEELEELLAALGLPPDLSPEELLELLDRIE 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 354 DCRETMEALQQSKDSdrgmeTKTETSEKTTNQLwLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQ 433
Cdd:COG4717 348 ELQELLREAEELEEE-----LQLEELEQEIAAL-LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEEL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 434 MRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQ--ECY 511
Cdd:COG4717 422 LEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKlaLEL 501
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766052 512 LEVCREKDElESTLRKTMEKAQEQTRQLLEDREEHVR---KLKLELEERYQETLKAE 565
Cdd:COG4717 502 LEEAREEYR-EERLPPVLERASEYFSRLTDGRYRLIRideDLSLKVDTEDGRTRPVE 557
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
9-118 |
6.25e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 39.81 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 9 ERQLDSLVEKLNDRERQIRylnhqlLIVQDEKDGLALSLresqklfqsgKEREMQLEAQIHALETQIEAFKVSEEKLTKK 88
Cdd:COG1842 57 ERQLEELEAEAEKWEEKAR------LALEKGREDLAREA----------LERKAELEAQAEALEAQLAQLEEQVEKLKEA 120
|
90 100 110
....*....|....*....|....*....|
gi 1958766052 89 LRTTEITLESLKQQLVELHHSESLQRAREQ 118
Cdd:COG1842 121 LRQLESKLEELKAKKDTLKARAKAAKAQEK 150
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
7-221 |
7.69e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 7 AKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLT 86
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766052 87 KKLRTTEitlESLKQQLVELH------------HSESLQRArEQHESVVAGLTQKYEEQVSCLQKNLDtTITALQEQVTw 154
Cdd:COG4942 97 AELEAQK---EELAELLRALYrlgrqpplalllSPEDFLDA-VRRLQYLKYLAPARREQAEELRADLA-ELAALRAELE- 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958766052 155 fpmsncqwskvgyfvlSEEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQS 221
Cdd:COG4942 171 ----------------AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| |
