|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
403-1056 |
1.18e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.45 E-value: 1.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 403 LERVDQVVREKEK----LRSDLDKAEKLKSLMASEVD-DHHAAIERRNEYNLRKldEEYKERIAALKNELRQEREQI--- 474
Cdd:COG1196 188 LERLEDILGELERqlepLERQAEKAERYRELKEELKElEAELLLLKLRELEAEL--EELEAELEELEAELEELEAELael 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 475 ---LQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENV---LAEKFGD 548
Cdd:COG1196 266 eaeLEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeeLEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 549 LDPSSAEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLpcQNALSEELDGHGDGIEQDQEpgsgec 628
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE--LAAQLEELEEAEEALLERLE------ 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 629 nplnmSIEAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIAD 708
Cdd:COG1196 418 -----RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 709 LQGQAAVLKEAHHK-ASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKAR 787
Cdd:COG1196 493 LLLLLEAEADYEGFlEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 788 SLTRdleqshqeQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETEcnRRVSQIEAQFQADCEKVTERCEQTLQSL 867
Cdd:COG1196 573 RATF--------LPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR--YYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 868 EGRYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHKERLAILSMEREQLL 947
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 948 QDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEhvlcqtGVSEQLGSQQLARLqvehEQERREMaGKI--AALESAh 1025
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPE------PPDLEELERELERL----EREIEAL-GPVnlLAIEEY- 790
|
650 660 670
....*....|....*....|....*....|.
gi 1958782428 1026 rvscERADQEKAEMSAEIRRLQSTVKDLQQA 1056
Cdd:COG1196 791 ----EELEERYDFLSEQREDLEEARETLEEA 817
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
455-1130 |
1.45e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 1.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 455 EYKERIAALKNELRQEREQ------ILQQVGKQRVELEQEIEKAKTeenyirdrlALSLKEnnrlENELLENAEKLAEYE 528
Cdd:COG1196 169 KYKERKEEAERKLEATEENlerledILGELERQLEPLERQAEKAER---------YRELKE----ELKELEAELLLLKLR 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 529 NLTSKLQRSLENVLAEKfgdldpssaeffLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQgrvlrlpcQNALSE 608
Cdd:COG1196 236 ELEAELEELEAELEELE------------AELEELEAELAELEAELEELRLELEELELELEEAQAE--------EYELLA 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 609 ELDGHGDGIEQDQEpgsgecnplnMSIEAELVIEQLKEQhhrdlchlRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKy 688
Cdd:COG1196 296 ELARLEQDIARLEE----------RRRELEERLEELEEE--------LAELEEELEELEEELEELEEELEEAEEELEEA- 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 689 EQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESF 768
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 769 RQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQRELQegrEEMETECNRRVSQIEAQ 848
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL---LEAEADYEGFLEGVKAA 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 849 FQADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERsqwefekdeLTQECTEAQEQLEEVLQR--EKATALARSQEQE 926
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI---------VVEDDEVAAAAIEYLKAAkaGRATFLPLDKIRA 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 927 TLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVlcQTGVSEQLGSQQLARLQVE 1006
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA--GRLREVTLEGEGGSAGGSL 662
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1007 HEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLLVlqggcRATAGEEAEGNGALSLLQQG 1086
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL-----EEELEEEALEEQLEAEREEL 737
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 1958782428 1087 EQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKLEP 1130
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
686-1263 |
4.22e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 4.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 686 QKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQmvfdeektQLQEELRLEHEQelKARLQQAE 765
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE--------EAQAEEYELLAE--LARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 766 ESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQI 845
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 846 EAQfQADCEKVTERCEQTLQSLEGRyRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQ 925
Cdd:COG1196 385 AEE-LLEALRAAAELAAQLEELEEA-EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 926 ETLEKTHKERLailsmEREQLLQDLKDLQNTSERQHSLLSdQMLELKRSQERELREPEHVLCQTGVSEQLGsqqlARLQV 1005
Cdd:COG1196 463 ELLAELLEEAA-----LLEAALAELLEELAEAAARLLLLL-EAEADYEGFLEGVKAALLLAGLRGLAGAVA----VLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1006 EHEQERremAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLLVLQGGCRATAGEEAEG-NGALSLLQ 1084
Cdd:COG1196 533 EAAYEA---ALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1085 QGEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKLEPGSAISSCLEERMTEISGSSREHAEpvmkrgtatk 1164
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA---------- 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1165 hFLSDPGDHEAQGLGSTGTSSVQRQECRTEESEASLECFSELENSEDTRTESWDLKSQIIQLQEQLTVLRADcdrASERK 1244
Cdd:COG1196 680 -ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE---EALEE 755
|
570
....*....|....*....
gi 1958782428 1245 RDLLFDISVLKKKLKMLER 1263
Cdd:COG1196 756 LPEPPDLEELERELERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
374-956 |
5.39e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 5.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 374 LALENELLVTKNGIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRN--EYNLRK 451
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQaeEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 452 LDEEYKERIAALKnELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLT 531
Cdd:COG1196 296 ELARLEQDIARLE-ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 532 SKLQRSLENVLAEKFGDLDpssaefflQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELD 611
Cdd:COG1196 375 AEAEEELEELAEELLEALR--------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 612 GHGDGIEQDQEpgsgecnpLNMSIEAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQG 691
Cdd:COG1196 447 AAEEEAELEEE--------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 692 MRTLEKQISELQS-EIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQ 770
Cdd:COG1196 519 LRGLAGAVAVLIGvEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 771 E-REGLAQAAAWTEEKAR-----SLTRDLEQSHQEQLLSLMEKHALEKEELRKEL-------SEYHQRELQEGREEMETE 837
Cdd:COG1196 599 AaVDLVASDLREADARYYvlgdtLLGRTLVAARLEAALRRAVTLAGRLREVTLEGeggsaggSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 838 CNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKAT 917
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958782428 918 ALARSQEQETLEKTH--------------------KERLAILSMEREQLLQDLKDLQNT 956
Cdd:COG1196 759 PPDLEELERELERLEreiealgpvnllaieeyeelEERYDFLSEQREDLEEARETLEEA 817
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
388-981 |
5.85e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 5.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 388 HQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIER-RNEYN-LRKLDEEYKERIAALKN 465
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEElKEELEsLEAELEELEAELEELES 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 466 ELRQEREQILQQVGKqRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRS-LENVLAE 544
Cdd:TIGR02168 373 RLEELEEQLETLRSK-VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEeLEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 545 KFGDLDPSSAEFFLQEERLAQMRNE---YEQQCRLLQDQVDELQSELEEYQAQGR------------------------- 596
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQAldaAERELAQLQARLDSLERLQENLEGFSEgvkallknqsglsgilgvlselisv 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 597 ----------VLRLPCQNALSEELDGHGDGIEQDQEPGSGECNPLNMSIEAELVIEQLKE---QHHRDLCHLRLELEDKV 663
Cdd:TIGR02168 532 degyeaaieaALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDReilKNIEGFLGVAKDLVKFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 664 RHYEKQ----LDHTRVACEKEQ-VAMKQKYEQGMR----------------------------------TLEKQISELQS 704
Cdd:TIGR02168 612 PKLRKAlsylLGGVLVVDDLDNaLELAKKLRPGYRivtldgdlvrpggvitggsaktnssilerrreieELEEKIEELEE 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 705 EIADLQGQAAVLKEAH--------------HKASCRHEEEKKQLQMvfdEEKTQLQEELRLEHEQELKARLQQAEESFRQ 770
Cdd:TIGR02168 692 KIAELEKALAELRKELeeleeeleqlrkelEELSRQISALRKDLAR---LEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 771 EREGLAQAAAWTEEKARSLTRDLEQsHQEQLLSLMEKHalekEELRKELSEyHQRELQEGREEMEtECNRRVSQIEAQFQ 850
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQ-LKEELKALREAL----DELRAELTL-LNEEAANLRERLE-SLERRIAATERRLE 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 851 aDCEKVTERCEQTLQSLEGRYRQ------ELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKAtALARSQE 924
Cdd:TIGR02168 842 -DLEEQIEELSEDIESLAAEIEEleelieELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE-LRRELEE 919
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958782428 925 QETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELRE 981
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
384-1130 |
1.92e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 1.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 384 KNGIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAI-ERRNEYN-LRKLDEEYKERIA 461
Cdd:TIGR02168 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVsELEEEIEeLQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 462 ALKNELRQEREQiLQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYEnltsKLQRSLENV 541
Cdd:TIGR02168 299 RLEQQKQILRER-LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE----AELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 542 LAEKFGDLDPSSAEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELDGHGDGIEQDQ 621
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 622 EPGSGECNPLNMSIEAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTR---------------VACEKEQVAMKQ 686
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEgvkallknqsglsgiLGVLSELISVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 687 KYEQG-------------MRTLEKQISELQSEIADLQGQAAVL---------KEAHHKASCRHEEEKKQLQMVFDEEKTQ 744
Cdd:TIGR02168 534 GYEAAieaalggrlqavvVENLNAAKKAIAFLKQNELGRVTFLpldsikgteIQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 745 LQEEL-----------RLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQ-EQLLSLMEKHALEK 812
Cdd:TIGR02168 614 LRKALsyllggvlvvdDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREiEELEEKIEELEEKI 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 813 EELRKELSEYhqRELQEGREEMETECNRRVSQIEAQFqADCEKVTERCEQTLQSLEGRYRQELKDLLDQhleersqwEFE 892
Cdd:TIGR02168 694 AELEKALAEL--RKELEELEEELEQLRKELEELSRQI-SALRKDLARLEAEVEQLEERIAQLSKELTEL--------EAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 893 KDELTQECTEAQEQLEEVLQrEKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELK 972
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 973 RSQERELREPEHVLCQTGVSEQLGsQQLARLQVEHEQERREMAGKIAALESAHRvsceradqEKAEMSAEIRRLQSTVKD 1052
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELE-ELIEELESELEALLNERASLEEALALLRS--------ELEELSEELRELESKRSE 912
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958782428 1053 LQQATSLLVLQGGCRATAGEEAEGNgalsLLQQGEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKLEP 1130
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVR----IDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGP 986
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1045-1982 |
1.70e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 66.68 E-value: 1.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1045 RLQSTVKDLQQATSLLVLQGGCRATAGEEAEgngalSLLQQGEQLLEENGDVLISLQKAHERAVKENAKMATEISRlqqr 1124
Cdd:pfam15921 146 QLQNTVHELEAAKCLKEDMLEDSNTQIEQLR-----KMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFR---- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1125 lkklEPGSAISSCLEERMTEISgssrehaepvmkrgtatkhFLSD---PGDHEAQGLGSTGTSSV----QRQECRTEE-- 1195
Cdd:pfam15921 217 ----SLGSAISKILRELDTEIS-------------------YLKGrifPVEDQLEALKSESQNKIelllQQHQDRIEQli 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1196 SEASLECFSELENSEDTRTESWDLKSQIIQLQEQLtvlRADCDRASERKRDLLFDISVLKKKLKMLERLpeasskykvlY 1275
Cdd:pfam15921 274 SEHEVEITGLTEKASSARSQANSIQSQLEIIQEQA---RNQNSMYMRQLSDLESTVSQLRSELREAKRM----------Y 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1276 EDAAREnacLQEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKM----------------------EEVTGTFLS---L 1330
Cdd:pfam15921 341 EDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLladlhkrekelslekeqnkrlwDRDTGNSITidhL 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1331 ENSYDEVKLENEKLSALVLRLQGKMEEVLER--AALQGDSYSLWEGPSENLEVTSDEKMLElhQTEEECTPEVMSRHHii 1408
Cdd:pfam15921 418 RRELDDRNMEVQRLEALLKAMKSECQGQMERqmAAIQGKNESLEKVSSLTAQLESTKEMLR--KVVEELTAKKMTLES-- 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1409 eecrqetrcCEQGSTQLLAGIKAHEiawfrRKIE-THQEKPSVQNRVILE-ESAALLGLQGTHLQHEATIAE-LEL---E 1482
Cdd:pfam15921 494 ---------SERTVSDLTASLQEKE-----RAIEaTNAEITKLRSRVDLKlQELQHLKNEGDHLRNVQTECEaLKLqmaE 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1483 KQKLQELTRNLRERVTTLAKQ--KDAPSQGEEEEELKAVMHDlqitcgemqRKVELLRYESEKLQEENSILRneittlnE 1560
Cdd:pfam15921 560 KDKVIEILRQQIENMTQLVGQhgRTAGAMQVEKAQLEKEIND---------RRLELQEFKILKDKKDAKIRE-------L 623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1561 EDSISNLKLEEL---NGSQEELwQKIETIEQEKASIQKMVEKLKKQVSDLklknqqldSENKELSQKNSQNK-EELKTln 1636
Cdd:pfam15921 624 EARVSDLELEKVklvNAGSERL-RAVKDIKQERDQLLNEVKTSRNELNSL--------SEDYEVLKRNFRNKsEEMET-- 692
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1637 qrlaemlcqkedpgtcTSEKWEQENESLKEELDrykvQTSTLVSSLEAElsevklQTHIVEQENLLLKDELERLKQLhrc 1716
Cdd:pfam15921 693 ----------------TTNKLKMQLKSAQSELE----QTRNTLKSMEGS------DGHAMKVAMGMQKQITAKRGQI--- 743
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1717 pdlSDFQQKMCSILSYNENLLKEKEVLSEElkscadklaeSSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLE 1796
Cdd:pfam15921 744 ---DALQSKIQFLEEAMTNANKEKHFLKEE----------KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1797 DILKNVNLQMAQIESDLQvtRQEKEalkqevmSLHLQLQNAIDkdwvsetathLSGLQGQQKRLSWNKLDHLMseEPELL 1876
Cdd:pfam15921 811 VALDKASLQFAECQDIIQ--RQEQE-------SVRLKLQHTLD----------VKELQGPGYTSNSSMKPRLL--QPASF 869
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1877 CQESKRLQTvVQNTQADLTHSREKIRQLESNllPTKHQKQLNQSCTVKPIEQEKLALKRECEQSRKERSPTSRKVSQMSS 1956
Cdd:pfam15921 870 TRTHSNVPS-SQSTASFLSHHSRKTNALKED--PTRDLKQLLQELRSVINEEPTVQLSKAEDKGRAPSLGALDDRVRDCI 946
|
970 980
....*....|....*....|....*...
gi 1958782428 1957 LEREL--ETIHLENEGLKKKQVRLDEKL 1982
Cdd:pfam15921 947 IESSLrsDICHSSSNSLQTEGSKSSETC 974
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1454-1773 |
1.91e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 1.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1454 VILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKqkdapsqgeEEEELKAVMHDLQITCGEMQRK 1533
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK---------ELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1534 VELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQ 1613
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1614 LDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENESLKE--ELDRYKVQTSTLVSSLEAELSEVKL 1691
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEleALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1692 QTHIVEQENLLLKDELERLKQLhrcpdLSDFQQKMCS----ILSYNENLLKEKEVLSEELKSCADKL-AESSLLEHRIAT 1766
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREK-----LAQLELRLEGlevrIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRLKR 976
|
....*..
gi 1958782428 1767 IKEEREA 1773
Cdd:TIGR02168 977 LENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1477-1801 |
3.41e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 3.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1477 AELELEK-----QKLQELTRNLRERVTTLAKQKDAPSQ----GEEEEELKAV-----MHDLQITCGEMQRKVELLRYESE 1542
Cdd:COG1196 177 AERKLEAteenlERLEDILGELERQLEPLERQAEKAERyrelKEELKELEAEllllkLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1543 KLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELS 1622
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1623 QKNSQNKEELKTLNQRLAEMLCQKEDpgtcTSEKWEQENESLKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENLL 1702
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAE----AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1703 LKDELERLKQLHRCPDlsdfqqkmcSILSYNENLLKEKEVLSEELKSCADKLAESSLLEHRIATIKEEREAWEEQSQDLK 1782
Cdd:COG1196 413 LERLERLEEELEELEE---------ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330
....*....|....*....
gi 1958782428 1783 SQLALSQEKVQNLEDILKN 1801
Cdd:COG1196 484 EELAEAAARLLLLLEAEAD 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
870-1642 |
4.49e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 4.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 870 RYRQELKDL--------LDQHLEERSQWEFEKDELTQECTEAQEQLEEV-------------LQREKATALARSQEQETL 928
Cdd:TIGR02168 217 ELKAELRELelallvlrLEELREELEELQEELKEAEEELEELTAELQELeekleelrlevseLEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 929 EKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQER-ELREPEHVLCQTGVSEQLG-SQQLARLQVE 1006
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKlEELKEELESLEAELEELEAeLEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1007 HEQERREMAGKIAALEsahrvsceradQEKAEMSAEIRRLQSTVKDLQQATSLLVLQGGCRATAGEEAEGNGALSLLQQG 1086
Cdd:TIGR02168 377 LEEQLETLRSKVAQLE-----------LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1087 EQLLEEngdvlisLQKAHERAVKENAKMATEISRLQQRLKKLEPGSAISS----CLEERMTEISGSSREHAEPVMKR--- 1159
Cdd:TIGR02168 446 EEELEE-------LQEELERLEEALEELREELEEAEQALDAAERELAQLQarldSLERLQENLEGFSEGVKALLKNQsgl 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1160 ----GTATKHFLSDPGDHEA--QGLGSTGTSSVqrqecrTEESEASLECFSELENSEDTRteswdlksqiiqlqeqLTVL 1233
Cdd:TIGR02168 519 sgilGVLSELISVDEGYEAAieAALGGRLQAVV------VENLNAAKKAIAFLKQNELGR----------------VTFL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1234 RADCDRASERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDaarenaclqeelRLMEMRYADSLDSNKELTAEVYRL 1313
Cdd:TIGR02168 577 PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSY------------LLGGVLVVDDLDNALELAKKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1314 Q-------DEMKKMEEVTGTFLSLENSYDEVKLENEKLSALVLRLQGKMEEvleraalqgdsyslwegpsenLEVTSDEK 1386
Cdd:TIGR02168 645 YrivtldgDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAE---------------------LEKALAEL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1387 MLELHQTEEEctpevmsrhhiIEECRQETRCCEQGSTQLLAGIKAHEiawfrRKIETHQEKPSVQNRVILEESAALLGLQ 1466
Cdd:TIGR02168 704 RKELEELEEE-----------LEQLRKELEELSRQISALRKDLARLE-----AEVEQLEERIAQLSKELTELEAEIEELE 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1467 GTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDapsqgeeeeELKAVMHDLQITCGEMQRKVELLRYESEKLQE 1546
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD---------ELRAELTLLNEEAANLRERLESLERRIAATER 838
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1547 ENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNS 1626
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
810
....*....|....*.
gi 1958782428 1627 QNKEELKTLNQRLAEM 1642
Cdd:TIGR02168 919 ELREKLAQLELRLEGL 934
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
636-963 |
5.76e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 5.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 636 EAELVIEQLKEQHHRdlchLRLELEDKVRhYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAV 715
Cdd:TIGR02169 188 RLDLIIDEKRQQLER----LRREREKAER-YQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 716 LKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRleheqELKARLQQAEESFRQEREGLAQAAAwteekarsltrdleq 795
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG-----ELEAEIASLERSIAEKERELEDAEE--------------- 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 796 sHQEQLLSLMEKHALEKEELRKELSEYHQR------ELQEGREEMEtECNRRVSQIEAQFQADCEKVTERcEQTLQSLeG 869
Cdd:TIGR02169 323 -RLAKLEAEIDKLLAEIEELEREIEEERKRrdklteEYAELKEELE-DLRAELEEVDKEFAETRDELKDY-REKLEKL-K 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 870 RYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKThkerLAILSMEREQLLQD 949
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL----AADLSKYEQELYDL 474
|
330
....*....|....
gi 1958782428 950 LKDLQNTSERQHSL 963
Cdd:TIGR02169 475 KEEYDRVEKELSKL 488
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1533-1984 |
7.62e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.27 E-value: 7.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1533 KVELLRYESEKLQEENSI--LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQ------- 1603
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIdkFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKllklell 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1604 VSDLKLKNQ---QLDSENKELSQKNSQNKEELKTLNQRLAEM---LCQKEDPGTCTSEKWEQENESLKEELDRYKvQTST 1677
Cdd:TIGR04523 203 LSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKtteISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1678 LVSSLEAELSEVKLQTHIVEQE-----NLLLKDELERLKQLHRC--PDLSDFQQKMCSILSYNENLLKEKEVLSEELKSC 1750
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEiqNQISQNNKIISQLNEQISQLKKELTNSESENSEK 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1751 ADKLAESsllEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSL 1830
Cdd:TIGR04523 362 QRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1831 HLQLQNAIDKDWVsetathlsglqgqqKRLSWNKLDHLMSEEP---ELLCQESKRLQTVVQNTQADLTHSREKIRQLesn 1907
Cdd:TIGR04523 439 NSEIKDLTNQDSV--------------KELIIKNLDNTRESLEtqlKVLSRSINKIKQNLEQKQKELKSKEKELKKL--- 501
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958782428 1908 llpTKHQKQLNQscTVKPIEQEKLALKRECEQSRKERsptSRKVSQMSSLERELETIH--LENEGLKKKQVRLDEKLME 1984
Cdd:TIGR04523 502 ---NEEKKELEE--KVKDLTKKISSLKEKIEKLESEK---KEKESKISDLEDELNKDDfeLKKENLEKEIDEKNKEIEE 572
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1551-1840 |
9.68e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 9.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1551 LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKE 1630
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1631 ELKTLNQRLAEMLCQKEDpgtcTSEKWEQENESLKEELDRYKVQTSTLvSSLEAELSEVKLQTHIVEQENLLLKDELERL 1710
Cdd:TIGR02168 762 EIEELEERLEEAEEELAE----AEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1711 KQLhrcpdlsdfqqkmcsilsyNENLLKEKEVLSEELKSCADKLAEsslLEHRIATIKEEREAWEEQSQDLKSQLALSQE 1790
Cdd:TIGR02168 837 ERR-------------------LEDLEEQIEELSEDIESLAAEIEE---LEELIEELESELEALLNERASLEEALALLRS 894
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1791 KVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAIDK 1840
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
657-1600 |
1.01e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 657 LELEDKVRHYEKQLdhtrvacekeQVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQM 736
Cdd:TIGR02168 216 KELKAELRELELAL----------LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 737 VFDEEKTQLQEELRLEHE-QELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRdleqsHQEQLLSLMEKHALEKEEL 815
Cdd:TIGR02168 286 LQKELYALANEISRLEQQkQILRERLANLERQLEELEAQLEELESKLDELAEELAE-----LEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 816 RKELSEYHQRE--LQEGREEMETEcNRRVSQIEAQfQADCEKVTERCEQTLQSLEGRyRQELKDLLDQHLEERSqwEFEK 893
Cdd:TIGR02168 361 EELEAELEELEsrLEELEEQLETL-RSKVAQLELQ-IASLNNEIERLEARLERLEDR-RERLQQEIEELLKKLE--EAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 894 DELTQECTEAQEQLEEVLQREKAtalarsqeqetlektHKERLAILSMEREQLLQDLKDLqntsERQHSLLSDQMLELKR 973
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELER---------------LEEALEELREELEEAEQALDAA----ERELAQLQARLDSLER 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 974 SQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERREMAGKIAALESAHRVSCERADQEKaemsaeirrlqstvkdl 1053
Cdd:TIGR02168 497 LQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAK----------------- 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1054 qQATSLLVLQGGCRATAGEEAEGNGALSLLQQGEQLLEENG--DVLISLQKAHERAVK------ENAKMATEISRLQQRL 1125
Cdd:TIGR02168 560 -KAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGflGVAKDLVKFDPKLRKalsyllGGVLVVDDLDNALELA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1126 KKLEPGSAISScleermteisgssrEHAEPVMKRGTATKhflsdpgdheaqglGSTGTSSVqRQECRTEESEASlECFSE 1205
Cdd:TIGR02168 639 KKLRPGYRIVT--------------LDGDLVRPGGVITG--------------GSAKTNSS-ILERRREIEELE-EKIEE 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1206 LENSEDtrteswDLKSQIIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEassKYKVLYEDAARENACL 1285
Cdd:TIGR02168 689 LEEKIA------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE---QLEERIAQLSKELTEL 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1286 QEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKMEEvtgTFLSLENSYDEVKLENEKLSALVLRLQGKMEEVLERAALQ 1365
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE---ELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1366 GDSyslwegpsenlevtsdekMLELHQTEEECTPEVMSRHHIIEECRQetrcceqgstqllagikahEIAWFRRKIETHQ 1445
Cdd:TIGR02168 837 ERR------------------LEDLEEQIEELSEDIESLAAEIEELEE-------------------LIEELESELEALL 879
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1446 EKPSVQNRVILEESAALLGLqgthlqhEATIAELELEKQKLQELTRNLRERVTTLAKQKDApSQGEEEEELKAVMHDLQI 1525
Cdd:TIGR02168 880 NERASLEEALALLRSELEEL-------SEELRELESKRSELRRELEELREKLAQLELRLEG-LEVRIDNLQERLSEEYSL 951
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958782428 1526 TCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKL 1600
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1538-1860 |
1.38e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1538 RYESEKLQEensiLRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSE 1617
Cdd:TIGR02169 670 RSEPAELQR----LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1618 NKELSQKNSQNKEELKTLNQRLAEMlcqkedpgTCTSEKWEQENESLKEELDRYKVQTST-LVSSLEAELSEVKLQTHIV 1696
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEEL--------EEDLHKLEEALNDLEARLSHSRIPEIQaELSKLEEEVSRIEARLREI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1697 EQE--NLLLKDELERLKQLHRCPDLSDFQQKMCSILSYNENLLKEKEVLSEELKSCADKLAEsslLEHRIATIKEEREAW 1774
Cdd:TIGR02169 818 EQKlnRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD---LESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1775 EEQ--------------SQDLKSQLALSQEKVQNLEDILKNVNLQMAQIES------DLQVTRQEKEALKQEVMSLHLQL 1834
Cdd:TIGR02169 895 EAQlrelerkieeleaqIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEipeeelSLEDVQAELQRVEEEIRALEPVN 974
|
330 340
....*....|....*....|....*.
gi 1958782428 1835 QNAIDKdwVSETATHLSGLQGQQKRL 1860
Cdd:TIGR02169 975 MLAIQE--YEEVLKRLDELKEKRAKL 998
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1437-1713 |
2.31e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1437 FRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEEEL 1516
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1517 KAVMHDLQITcgEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKM 1596
Cdd:TIGR02168 317 QLEELEAQLE--ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1597 VEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENESLKEELDRYKVQTS 1676
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
250 260 270
....*....|....*....|....*....|....*..
gi 1958782428 1677 TLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQL 1713
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
390-1156 |
2.87e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 2.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 390 AALASFKAEIRHLLERVDQVVREKEKLRSDLDkaEKLKSLMASEVDDHHAaiERRNEYNLRKLDEEYKERIAAlKNELRQ 469
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIID--EKRQQLERLRREREKA--ERYQALLKEKREYEGYELLKE-KEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 470 EREQILQQVGKQRVELEQ---EIEKAKTEENYIRDRLA-LSLKENNRLENELLENAEKLAEYENLTSKLQRSLEnVLAEK 545
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKlteEISELEKRLEEIEQLLEeLNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA-EKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 546 FGDLDPSSAEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQnALSEELDGHGDGIEQDQEPGS 625
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE-EVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 626 GECNPLNMSIEAELVIEQLKEQHHRDLCHLRLELED-KVRHYEKQLDHTRVACE--------KEQVAMKQKYEQGMRTLE 696
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGiEAKINELEEEKEDKALEikkqewklEQLAADLSKYEQELYDLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 697 KQISELQSEIADLQGQAAVLkEAHHKASCRHEEEKKQLQMVFDE----------EKTQLQEELRLEHEQELKARLQ---- 762
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEA-EAQARASEERVRGGRAVEEVLKAsiqgvhgtvaQLGSVGERYATAIEVAAGNRLNnvvv 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 763 -------QAEESFRQEREGLAQAAAWTeeKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQ-----RELQEG 830
Cdd:TIGR02169 555 eddavakEAIELLKRRKAGRATFLPLN--KMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGdtlvvEDIEAA 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 831 REEM--------ETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYR-QELKDLLDQHLEERSQWEFEKDELTQECT 901
Cdd:TIGR02169 633 RRLMgkyrmvtlEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERlEGLKRELSSLQSELRRIENRLDELSQELS 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 902 EAQEQLEEVLQREKATALARSQEQETLEKThKERLAILSMEREQLLQDLKDLQntserqhSLLSDQMLELKRSQErELRE 981
Cdd:TIGR02169 713 DASRKIGEIEKEIEQLEQEEEKLKERLEEL-EEDLSSLEQEIENVKSELKELE-------ARIEELEEDLHKLEE-ALND 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 982 PEHVLCQTGVseqlgsQQLARLQVEHEQERREMAGKIAALESA-HRVSCER--ADQEKAEMSAEIRRLQSTVKDLQQATS 1058
Cdd:TIGR02169 784 LEARLSHSRI------PEIQAELSKLEEEVSRIEARLREIEQKlNRLTLEKeyLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1059 LlvLQGGCRATAGEEAEGNGALSLLQQGEQLLEENGDVLISLQKAHERAVKEnakMATEISRLQQRLKKLEpgsAISSCL 1138
Cdd:TIGR02169 858 N--LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE---LEAQIEKKRKRLSELK---AKLEAL 929
|
810
....*....|....*...
gi 1958782428 1139 EERMTEISGSSREHAEPV 1156
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEIP 947
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
385-926 |
3.61e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 62.24 E-value: 3.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 385 NGIHQAALasfKA-EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMAS-----EVDDHHAAIERRNEyNLRKLDEEY-- 456
Cdd:COG4913 238 ERAHEALE---DArEQIELLEPIRELAERYAAARERLAELEYLRAALRLwfaqrRLELLEAELEELRA-ELARLEAELer 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 457 -KERIAALKNELRQEREQILQQVGKQRVELEQEIEKAKTEenyiRDRLALSLKENNRLENEL-LENAEKLAEYENLTSKL 534
Cdd:COG4913 314 lEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERE----LEERERRRARLEALLAALgLPLPASAEEFAALRAEA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 535 QRSLENVlaekfgdldpsSAEFFLQEERLAQMRNEYEQqcrlLQDQVDELQSELEEYQAQG-----RVLRLpcQNALSEE 609
Cdd:COG4913 390 AALLEAL-----------EEELEALEEALAEAEAALRD----LRRELRELEAEIASLERRKsnipaRLLAL--RDALAEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 610 LdghgdGIEQDQEPgsgecnplnmsIEAELVieQLKEQHH-------RDLCHLRLEL------EDKVRHYEKQLdHTRVA 676
Cdd:COG4913 453 L-----GLDEAELP-----------FVGELI--EVRPEEErwrgaieRVLGGFALTLlvppehYAAALRWVNRL-HLRGR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 677 CEKEQVAMKQKYEQGMRTLEKQISE------------LQSEIADLQGQAAVLKEA----HHKA----------SCRHE-- 728
Cdd:COG4913 514 LVYERVRTGLPDPERPRLDPDSLAGkldfkphpfrawLEAELGRRFDYVCVDSPEelrrHPRAitragqvkgnGTRHEkd 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 729 ---EEKKQLQMVFD-----EEKTQLQEELRLEHE--QELKARLQQAEESFRQEREGLAQAA--AWTEEKARSLTRDLEQs 796
Cdd:COG4913 594 drrRIRSRYVLGFDnraklAALEAELAELEEELAeaEERLEALEAELDALQERREALQRLAeySWDEIDVASAEREIAE- 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 797 hQEQLLSLMEKHALEKEELRKELSEyHQRELQEGREEMEtECNRRVSQIEAQfQADCEKVTERCEQTLQSLEGRYRQELK 876
Cdd:COG4913 673 -LEAELERLDASSDDLAALEEQLEE-LEAELEELEEELD-ELKGEIGRLEKE-LEQAEEELDELQDRLEAAEDLARLELR 748
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 1958782428 877 DLLDQHLEERSQWEFEKdeltqectEAQEQLEEvlQREKATALARSQEQE 926
Cdd:COG4913 749 ALLEERFAAALGDAVER--------ELRENLEE--RIDALRARLNRAEEE 788
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
389-986 |
4.16e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.01 E-value: 4.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 389 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLDEEYKERIAALkNELR 468
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK-RRDKLTEEYAELKEEL-EDLR 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 469 QEREQILQQVGKQRVEL---EQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENV---L 542
Cdd:TIGR02169 371 AELEEVDKEFAETRDELkdyREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKaleI 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 543 AEKFGDLDPSSAEFFLQEERLAQMRNEYEQqcrlLQDQVDELQSELEEYQAQGRVL--RLPCQNALSEELDGHGDGI--- 617
Cdd:TIGR02169 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDR----VEKELSKLQRELAEAEAQARASeeRVRGGRAVEEVLKASIQGVhgt 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 618 --------EQDQEP----GSGECNplNMSIEAELV----IEQLKE---------------QHHRDLCHLRL--------- 657
Cdd:TIGR02169 527 vaqlgsvgERYATAievaAGNRLN--NVVVEDDAVakeaIELLKRrkagratflplnkmrDERRDLSILSEdgvigfavd 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 658 --ELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEI-------ADLQGQAAVLKEAHHKASCRHE 728
Cdd:TIGR02169 605 lvEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSGAMtggsrapRGGILFSRSEPAELQRLRERLE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 729 EEKKQLQMVFDE------EKTQLQEELRLEHEQ--ELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDleQSHQEQ 800
Cdd:TIGR02169 685 GLKRELSSLQSElrrienRLDELSQELSDASRKigEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV--KSELKE 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 801 LLSLMEKHALEKEELRKELSEYHQRELQEGREEMETEcnrrVSQIEAQFQaDCEKVTERCEQTLQSLEGRyRQELKDLLD 880
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE----LSKLEEEVS-RIEARLREIEQKLNRLTLE-KEYLEKEIQ 836
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 881 QHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHKER------LAILSMEREQL---LQDLK 951
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERdeleaqLRELERKIEELeaqIEKKR 916
|
650 660 670
....*....|....*....|....*....|....*
gi 1958782428 952 DLQNTSERQHSLLSDQMLELKRSQERELREPEHVL 986
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL 951
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1424-1709 |
8.78e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 8.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1424 QLLAGIKAHEIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQ 1503
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1504 KD-----APSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEE 1578
Cdd:COG1196 304 IArleerRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1579 LWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMlcqkedpgtctsEKWE 1658
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA------------AEEE 451
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1958782428 1659 QENESLKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELER 1709
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1453-1802 |
2.09e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1453 RVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKdapSQGEEEEELKAVMHDLQITC----- 1527
Cdd:TIGR02168 158 RAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQA---EKAERYKELKAELRELELALlvlrl 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1528 GEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDL 1607
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1608 KLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDpgtctSEKWEQENESLKEELDRYKVQTSTLVSSLEAELS 1687
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES-----LEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1688 EVKLQTHIVEQENLLLKDELERLKqlHRCPDLSDFQQKMCSILSYNEnLLKEKEVLSEELKSCADKLAESSLLEHRIATI 1767
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLE--DRRERLQQEIEELLKKLEEAE-LKELQAELEELEEELEELQEELERLEEALEEL 466
|
330 340 350
....*....|....*....|....*....|....*
gi 1958782428 1768 KEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNV 1802
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
433-1232 |
2.23e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.75 E-value: 2.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 433 EVDDHHAAIERRNEYNLRKLDEEYKERIAALK------NELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRLALS 506
Cdd:pfam15921 60 ELDSPRKIIAYPGKEHIERVLEEYSHQVKDLQrrlnesNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 507 LKE-NNRLENEL--LENAEKLAE--YENLTSKLQR------SLENVLAEKFG---DLDPSSAEFFLQEERLAQMR----- 567
Cdd:pfam15921 140 QEDlRNQLQNTVheLEAAKCLKEdmLEDSNTQIEQlrkmmlSHEGVLQEIRSilvDFEEASGKKIYEHDSMSTMHfrslg 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 568 NEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELDGHGDGIEQ------------DQEPGSGECNPLNMSI 635
Cdd:pfam15921 220 SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQliseheveitglTEKASSARSQANSIQS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 636 EAELVIEQLKEQHHRDLCHLRlELEDKVRHYEKQLDHTrvacekeqvamKQKYEQGMRTLEKQISELQSEIADlqgqaav 715
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLS-DLESTVSQLRSELREA-----------KRMYEDKIEELEKQLVLANSELTE------- 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 716 lkeahhkasCRHEEEKkqlqmvFDEEKTQLQEELrleheQELKARLQQAEESFRQEREglAQAAAWTEEKARSLTRD-LE 794
Cdd:pfam15921 361 ---------ARTERDQ------FSQESGNLDDQL-----QKLLADLHKREKELSLEKE--QNKRLWDRDTGNSITIDhLR 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 795 QSHQEQLLSLMEKHALEKeELRKELSeyHQRELQEGREEMETECNRRVSQIEAQFQADCE---KVTERCEQTLQSLEGRY 871
Cdd:pfam15921 419 RELDDRNMEVQRLEALLK-AMKSECQ--GQMERQMAAIQGKNESLEKVSSLTAQLESTKEmlrKVVEELTAKKMTLESSE 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 872 RQeLKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEV--LQREKATALARSQEQETLEKTHKERLAILSMEREQlLQD 949
Cdd:pfam15921 496 RT-VSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELqhLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQ-IEN 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 950 LKDLQNtserQHSLLSDQMLELKRSQERELREpehvlcqtgvsEQLGSQQLARLQVEHEQERREMAGKIAALE------- 1022
Cdd:pfam15921 574 MTQLVG----QHGRTAGAMQVEKAQLEKEIND-----------RRLELQEFKILKDKKDAKIRELEARVSDLElekvklv 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1023 ---SAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSllVLQGGCRATAGE-EAEGNGALSLLQQGEQLLEENGDVLI 1098
Cdd:pfam15921 639 nagSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE--VLKRNFRNKSEEmETTTNKLKMQLKSAQSELEQTRNTLK 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1099 SLQKAHERAVKENAKMATEISRLQQRLKKLEpgsaisscleermteisgSSREHAEPVMKRGTATKHFLSDPGDHEAQGL 1178
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQIDALQ------------------SKIQFLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958782428 1179 GSTGTSS---------VQRQECRTEESEASLECfsELENSEDTRTESWDlksqIIQLQEQLTV 1232
Cdd:pfam15921 779 STVATEKnkmagelevLRSQERRLKEKVANMEV--ALDKASLQFAECQD----IIQRQEQESV 835
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
689-1129 |
4.36e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 4.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 689 EQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEEL---------RLEHEQELKA 759
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIerlereleeRERRRARLEA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 760 RLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKE--ELRKELSEYHQR------ELQEGR 831
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRElrELEAEIASLERRksnipaRLLALR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 832 EEMETECNrrVSQIEAQFQADCEKVTERCEQTLQSLEG-------------RYRQELKDLLDQ-HLEERSQWEFEK---- 893
Cdd:COG4913 447 DALAEALG--LDEAELPFVGELIEVRPEEERWRGAIERvlggfaltllvppEHYAAALRWVNRlHLRGRLVYERVRtglp 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 894 -------------DELTQECTEAQEQLEEVLQREKATALARSQEQetLEKTHK--------------------------- 933
Cdd:COG4913 525 dperprldpdslaGKLDFKPHPFRAWLEAELGRRFDYVCVDSPEE--LRRHPRaitragqvkgngtrhekddrrrirsry 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 934 -------ERLAILSMEREQL---LQDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQlgSQQLARL 1003
Cdd:COG4913 603 vlgfdnrAKLAALEAELAELeeeLAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAEL--EAELERL 680
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1004 QVEHeQERREMAGKIAALESAHrvscERADQEKAEMSAEIRRLQSTVKDLQQatsllvLQGGCRATAgEEAEGNGALSLL 1083
Cdd:COG4913 681 DASS-DDLAALEEQLEELEAEL----EELEEELDELKGEIGRLEKELEQAEE------ELDELQDRL-EAAEDLARLELR 748
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1958782428 1084 QQGEQLLEENgdvlisLQKAHERAVKENakMATEISRLQQRLKKLE 1129
Cdd:COG4913 749 ALLEERFAAA------LGDAVERELREN--LEERIDALRARLNRAE 786
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
903-1641 |
5.50e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 5.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 903 AQEQLEEVLQREKatalarsqEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELRep 982
Cdd:TIGR02169 175 ALEELEEVEENIE--------RLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER-- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 983 ehvlcqtgvseqlgsqQLARLQVEHEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLLVl 1062
Cdd:TIGR02169 245 ----------------QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE- 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1063 qggcRATAGEEAEGNGALSLLQQGEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKlepgsaisscLEERM 1142
Cdd:TIGR02169 308 ----RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED----------LRAEL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1143 TEISGSSREHAEPVMKRGTATKHFLSDPGDHeaQGLGSTGTSSVQRQECRTEESEASLECFSELENSEDTRTEswDLKSQ 1222
Cdd:TIGR02169 374 EEVDKEFAETRDELKDYREKLEKLKREINEL--KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE--DKALE 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1223 IIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDAARENACLQEELRL----------- 1291
Cdd:TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgtvaq 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1292 ---MEMRYADSLDSNKELTAEVYRLQDE---------MKKMEEVTGTFLSL-----ENSYDEVKLEN------------- 1341
Cdd:TIGR02169 530 lgsVGERYATAIEVAAGNRLNNVVVEDDavakeaielLKRRKAGRATFLPLnkmrdERRDLSILSEDgvigfavdlvefd 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1342 ---EKLSALVLRLQGKME-------------------EVLERA-ALQGDSYSLWEGPSENLEVTSDEKML-----ELHQT 1393
Cdd:TIGR02169 610 pkyEPAFKYVFGDTLVVEdieaarrlmgkyrmvtlegELFEKSgAMTGGSRAPRGGILFSRSEPAELQRLrerleGLKRE 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1394 EEECTPEVMSRHHIIEECRQETRCCEQ--GSTQLLAGIKAHEIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQ 1471
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRkiGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1472 HEATIAELELEKQKLQEltRNLRERVTTLAKQKDapSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSIL 1551
Cdd:TIGR02169 770 LEEDLHKLEEALNDLEA--RLSHSRIPEIQAELS--KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1552 RNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEE 1631
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
810
....*....|
gi 1958782428 1632 LKTLNQRLAE 1641
Cdd:TIGR02169 926 LEALEEELSE 935
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1531-1802 |
8.37e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.34 E-value: 8.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1531 QRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQvsdLKLK 1610
Cdd:TIGR04523 418 QQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE---LKSK 494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1611 NQQLD---SENKELSQKNSQNKEELKTLNQRLAEMlcqkedpgtcTSEKWEQENE--SLKEELDrykvqtstlvsSLEAE 1685
Cdd:TIGR04523 495 EKELKklnEEKKELEEKVKDLTKKISSLKEKIEKL----------ESEKKEKESKisDLEDELN-----------KDDFE 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1686 LSEVKLQTHIVEQENlllkdELERLKQLHRCPDLSDFQQkmcsilsynENLLKEKEVLSEELKS-CADKLAESSLLEHRI 1764
Cdd:TIGR04523 554 LKKENLEKEIDEKNK-----EIEELKQTQKSLKKKQEEK---------QELIDQKEKEKKDLIKeIEEKEKKISSLEKEL 619
|
250 260 270
....*....|....*....|....*....|....*...
gi 1958782428 1765 ATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNV 1802
Cdd:TIGR04523 620 EKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEI 657
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1476-1835 |
8.90e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 8.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1476 IAELELEKQKLQELTRNLRERVTTLAKQKDapsQGEEEEELKAVMHDLQITcgEMQRKVELLRYESEKLQEENSILRNEI 1555
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRRERE---KAERYQALLKEKREYEGY--ELLKEKEALERQKEAIERQLASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1556 TTLNEEDSISNLKLEELNGSQEELWQKIETI-EQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELkt 1634
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI-- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1635 lnqrlaemlcqkedpgtctsEKWEQENESLKEELDRYKVQTSTL---VSSLEAELSEVKLQTHIVEQENLLLKDELERLK 1711
Cdd:TIGR02169 332 --------------------DKLLAEIEELEREIEEERKRRDKLteeYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1712 QlhrcpDLSDFQQKMCSILSYNENLLKEKEVLSEELkscadklaesSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEK 1791
Cdd:TIGR02169 392 E-----KLEKLKREINELKRELDRLQEELQRLSEEL----------ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1958782428 1792 VQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQ 1835
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
720-1026 |
4.04e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.13 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 720 HHKASCRHEEEKKQLQMvfdEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQE 799
Cdd:pfam17380 280 HQKAVSERQQQEKFEKM---EQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 800 QLLSLMEKhaLEKEELRKELSEYH-------QRELQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYR 872
Cdd:pfam17380 357 ERKRELER--IRQEEIAMEISRMRelerlqmERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 873 QELkdlldQHLEERSQWEFEKdeLTQECTEAQEQLEEVLQRE---KATALARSQEQETLEKTHKERLAILSMEREQLLQD 949
Cdd:pfam17380 435 REV-----RRLEEERAREMER--VRLEEQERQQQVERLRQQEeerKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 950 LKDLQN--------TSERQHSLLSDQMlelKRSQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERREMAGKIAAL 1021
Cdd:pfam17380 508 MIEEERkrkllekeMEERQKAIYEEER---RREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVES 584
|
....*
gi 1958782428 1022 ESAHR 1026
Cdd:pfam17380 585 EKARA 589
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1242-1984 |
4.36e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 4.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1242 ERKRDLLFDisvLKKKLKMLERLPEASSKYKVLYED--------AARENACLQEELRLMEMRYADSLDSNKELTAEVYRL 1313
Cdd:TIGR02168 189 DRLEDILNE---LERQLKSLERQAEKAERYKELKAElrelelalLVLRLEELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1314 QdemKKMEEVTGTFLSLENSYDEVKLENEKLSALVLRLQGKMEEVLERAALQGDSYSLWEGPSENLEVTSDEKMLELHQT 1393
Cdd:TIGR02168 266 E---EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1394 EEEctpevmsrhhiIEECRQEtrcceqgstqlLAGIKAhEIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHE 1473
Cdd:TIGR02168 343 EEK-----------LEELKEE-----------LESLEA-ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1474 ATIAELELEKQKLQELTRNLRERVTTLAKQKDAPS---QGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSI 1550
Cdd:TIGR02168 400 NEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkeLQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1551 LRNEITTLNEE---------------DSISNLKL--EELNGSQEELWQKIETIEQ-EKA-------SIQKMV----EKLK 1601
Cdd:TIGR02168 480 AERELAQLQARldslerlqenlegfsEGVKALLKnqSGLSGILGVLSELISVDEGyEAAieaalggRLQAVVvenlNAAK 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1602 KQVSDLKLKNQQ------LDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDP----------GTCTSEKWEQENESLK 1665
Cdd:TIGR02168 560 KAIAFLKQNELGrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllgGVLVVDDLDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1666 EELDRYK-------------------VQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQlhrcpDLSDFQQKM 1726
Cdd:TIGR02168 640 KLRPGYRivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRK-----ELEELEEEL 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1727 CSILSYNENLLKEkevLSEELKSCADKLAESSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQM 1806
Cdd:TIGR02168 715 EQLRKELEELSRQ---ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1807 AQIESDLQVTRQEKEALKQEVMSLHLQLQNAidkdwvsetathLSGLQGQQKRLswnkldHLMSEEPELLCQESKRLQTV 1886
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANL------------RERLESLERRI------AATERRLEDLEEQIEELSED 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1887 VQNTQADLTHSREKIRQLESNLlpTKHQKQLNQsctvkpIEQEKLALKRECEQSRKERSPTSRKVS----QMSSLERELE 1962
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESEL--EALLNERAS------LEEALALLRSELEELSEELRELESKRSelrrELEELREKLA 925
|
810 820
....*....|....*....|..
gi 1958782428 1963 TIHLENEGLKKKQVRLDEKLME 1984
Cdd:TIGR02168 926 QLELRLEGLEVRIDNLQERLSE 947
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
389-594 |
4.96e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 4.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 389 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDkaeklkslmasEVDDHHAAIERRNEYNLRKLD-EEYKERIAALKNEL 467
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD-----------ALQERREALQRLAEYSWDEIDvASAEREIAELEAEL 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 468 RQERE--QILQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLenvLAEK 545
Cdd:COG4913 678 ERLDAssDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL---LEER 754
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958782428 546 FGDLdpssaeffLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQ 594
Cdd:COG4913 755 FAAA--------LGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1531-1840 |
7.29e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 7.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1531 QRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQ---------------------- 1588
Cdd:TIGR04523 292 QLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKeltnsesensekqreleekqne 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1589 ------EKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQEN- 1661
Cdd:TIGR04523 372 ieklkkENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSv 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1662 -ESLKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHRCPD--LSDFQQKMCSILSYNENLLK 1738
Cdd:TIGR04523 452 kELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEekVKDLTKKISSLKEKIEKLES 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1739 EKEVLSEELKSCADKLAE------SSLLEHRIATIKEEREAW---------------------EEQSQDLKSQLALSQEK 1791
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKddfelkKENLEKEIDEKNKEIEELkqtqkslkkkqeekqelidqkEKEKKDLIKEIEEKEKK 611
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1958782428 1792 VQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAIDK 1840
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
766-1646 |
1.03e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.21 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 766 ESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQI 845
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 846 EAqfqadcekvTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQ 925
Cdd:pfam02463 246 LR---------DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 926 ETLEKTHKERLAILSMEREQLLQDLKDLQNtSERQHSLLSDQMLELKRSQERELREPEHVLcqtgVSEQLGSQQLARLQV 1005
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKE-LEIKREAEEEEEEELEKLQEKLEQLEEELL----AKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1006 EHEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLqqatsllvlqggcratagEEAEGNGALSLLQQ 1085
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESI------------------ELKQGKLTEEKEEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1086 GEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRLKKLEPGSAISSCLEERMTEISGSSRehaePVMKRGTATKH 1165
Cdd:pfam02463 454 EKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKD----GVGGRIISAHG 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1166 FLSDPGDHEAQGLGSTGTSSVQRQECRTEESEASLECFSELENSED----TRTESWDLKSQIIQLQEQLTVLRADCDRAS 1241
Cdd:pfam02463 530 RLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLgarkLRLLIPKLKLPLKSIAVLEIDPILNLAQLD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1242 ERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDAARENACLQEELRLMEMRYadsldsNKELTAEVYRLQDEMKKME 1321
Cdd:pfam02463 610 KATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEV------KASLSELTKELLEIQELQE 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1322 EVTGTFLSLENSYDEVKLENEKLSALVLRLQGKMEEVLERAALQGDSYSLWEGPSENLEVTSDEKMLELHQTEEECTPEV 1401
Cdd:pfam02463 684 KAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKE 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1402 MSRHHIIEecrQETRCCEQGSTQLLAGIKAHEIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELEL 1481
Cdd:pfam02463 764 EEKSELSL---KEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELAL 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1482 EKQKLQELTRNLRERVTTLAK--QKDAPSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLN 1559
Cdd:pfam02463 841 ELKEEQKLEKLAEEELERLEEeiTKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1560 EEDSISNLKLEELNGSQEELW-----------QKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQN 1628
Cdd:pfam02463 921 ERIKEEAEILLKYEEEPEELLleeadekekeeNNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL 1000
|
890
....*....|....*...
gi 1958782428 1629 KEELKTLNQRLAEMLCQK 1646
Cdd:pfam02463 1001 EEEKKKLIRAIIEETCQR 1018
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
695-925 |
1.04e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 695 LEKQISELQSEIADLQGQAAVLKEAHhkascrheeekkqLQMVFDEEKTQLQEELrleheQELKARLQQAEESFRQEREG 774
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKN-------------GLVDLSEEAKLLLQQL-----SELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 775 LAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYH------QRELQEGREEMETECNRRVSQIEAQ 848
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHpdvialRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958782428 849 FQAdcekvTERCEQTLQSLEGRYRQELKDLldqhleerSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQ 925
Cdd:COG3206 322 LEA-----LQAREASLQAQLAQLEARLAEL--------PELEAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1575-1862 |
1.10e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1575 SQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMlcqkedpgtcts 1654
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL------------ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1655 ekwEQENESLKEELDRYKVQTSTLVSSLEaelsevklQTHIVEQENLLLKDElerlkqlhrcpDLSDFQQKMCSILSYNE 1734
Cdd:COG4942 89 ---EKEIAELRAELEAQKEELAELLRALY--------RLGRQPPLALLLSPE-----------DFLDAVRRLQYLKYLAP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1735 NLLKEKEVLSEELkscadklaessllehriATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQ 1814
Cdd:COG4942 147 ARREQAEELRADL-----------------AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELA 209
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1958782428 1815 VTRQEKEALKQEVMSLHLQLQNAIDKDWVSETATHLSGLQGQQKRLSW 1862
Cdd:COG4942 210 ELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1433-1986 |
1.45e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1433 EIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEE 1512
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1513 E-----EELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLK-----LEELNGSQEELWQK 1582
Cdd:TIGR02168 376 EleeqlETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaeLEELEEELEELQEE 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1583 IETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQ-------------KNSQNKEELKTLNQRLAEMLCQKEDP 1649
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfsegvkALLKNQSGLSGILGVLSELISVDEGY 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1650 GTC---------------TSEKWEQENESLKE---------ELDRYKVQ--TSTLVSSLEAELSEVKLQTHIVEQENLLL 1703
Cdd:TIGR02168 536 EAAieaalggrlqavvveNLNAAKKAIAFLKQnelgrvtflPLDSIKGTeiQGNDREILKNIEGFLGVAKDLVKFDPKLR 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1704 KDELERLKQLHRCPDLSDFQQkMCSILSYNENL--LKEKEVLSEELKSCADKLAESSLLEHR--IATIKEEREAWEEQSQ 1779
Cdd:TIGR02168 616 KALSYLLGGVLVVDDLDNALE-LAKKLRPGYRIvtLDGDLVRPGGVITGGSAKTNSSILERRreIEELEEKIEELEEKIA 694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1780 DLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAidkdwvsetatHLSGLQGQQKR 1859
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL-----------SKELTELEAEI 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1860 LSWNKLDHLMSEEPELLCQESKRLQTVVQNTQADLTHSREKIRQLESNLLPTKhQKQLNQSCTVKPIEQEKLALKRECEQ 1939
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN-EEAANLRERLESLERRIAATERRLED 842
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1958782428 1940 SRKERSPTSRKVS----QMSSLERELETIHLENEGLKKKQVRLDEKLMEAR 1986
Cdd:TIGR02168 843 LEEQIEELSEDIEslaaEIEELEELIEELESELEALLNERASLEEALALLR 893
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
434-930 |
1.52e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 434 VDDHHAAIERRNEYNlrkldeeYKERIAALKNEL----------RQEREQILQQVGKQRVELEQEIEKAKTEEnyirdrl 503
Cdd:TIGR02168 628 VDDLDNALELAKKLR-------PGYRIVTLDGDLvrpggvitggSAKTNSSILERRREIEELEEKIEELEEKI------- 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 504 alslkenNRLENELLENAEKLAEYENLTSKLQRslenvlaekfgDLDPSSAEFFLQEERLAQMRNEYEQqcrlLQDQVDE 583
Cdd:TIGR02168 694 -------AELEKALAELRKELEELEEELEQLRK-----------ELEELSRQISALRKDLARLEAEVEQ----LEERIAQ 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 584 LQSELEEYQAQgRVLRLPCQNALSEELDGHGDGIEQDQEPgsgecnPLNMSIEAELVIEQLKEQhHRDLCHLRLELEDKV 663
Cdd:TIGR02168 752 LSKELTELEAE-IEELEERLEEAEEELAEAEAEIEELEAQ------IEQLKEELKALREALDEL-RAELTLLNEEAANLR 823
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 664 RHYEkQLDHTRVACEKEQVAMKQKYEQgmrtLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKT 743
Cdd:TIGR02168 824 ERLE-SLERRIAATERRLEDLEEQIEE----LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 744 QLQEELRLEHE-QELKARLQQAEESFRQEREGLAQaaawteekarsltrdLEQSHQEQLLSLMEKHALEKEELrkelsey 822
Cdd:TIGR02168 899 LSEELRELESKrSELRRELEELREKLAQLELRLEG---------------LEVRIDNLQERLSEEYSLTLEEA------- 956
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 823 hqRELQEGREEMETECNRRVSQIEAQFQADCEkVTERCEQTLQSLEGRYrqelkdlldQHLEErsqwefEKDELtqecTE 902
Cdd:TIGR02168 957 --EALENKIEDDEEEARRRLKRLENKIKELGP-VNLAAIEEYEELKERY---------DFLTA------QKEDL----TE 1014
|
490 500
....*....|....*....|....*...
gi 1958782428 903 AQEQLEEVLqrEKATALARSQEQETLEK 930
Cdd:TIGR02168 1015 AKETLEEAI--EEIDREARERFKDTFDQ 1040
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
398-611 |
1.75e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 53.01 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 398 EIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALkNELRQEREQILQQ 477
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEI-SELENEIKELEQE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 478 vgKQRVE----LEQEIEKAKTEENYIrdRLALSLKENNRLENELLENAEKLAEYENLTSKL------QRSLENVLAEKFG 547
Cdd:PRK05771 123 --IERLEpwgnFDLDLSLLLGFKYVS--VFVGTVPEDKLEELKLESDVENVEYISTDKGYVyvvvvvLKELSDEVEEELK 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958782428 548 DLDPSSAEFFlQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELD 611
Cdd:PRK05771 199 KLGFERLELE-EEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
468-912 |
1.78e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.42 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 468 RQEREQILQQVGKQRVELeQEIEKAKTEENYIRDRLALSLKENNRLENELLenaeklAEYENLTSKLQRSLENV-LAEKF 546
Cdd:COG3096 277 ANERRELSERALELRREL-FGARRQLAEEQYRLVEMARELEELSARESDLE------QDYQAASDHLNLVQTALrQQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 547 G--DLDPSSAEFFLQE-----ERLAQMRNEYEQQCRLLQDQVDELQSELEEYQA-----QGRVLRLpcQNALseeldghg 614
Cdd:COG3096 350 EryQEDLEELTERLEEqeevvEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQaldvqQTRAIQY--QQAV-------- 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 615 dgieQDQEPGSGECNplnmsiEAELVIEQLKEQHHRDLCHLRlELEDKVRHYEKQLDHTRVAcekeqvamKQKYEQGMRT 694
Cdd:COG3096 420 ----QALEKARALCG------LPDLTPENAEDYLAAFRAKEQ-QATEEVLELEQKLSVADAA--------RRQFEKAYEL 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 695 LEKQISELQSEIADLQGQAAVlkeahhkasCRHEEEKKQLQMVfdeektqlqeelrleheQELKARLQQAEESFRQEREg 774
Cdd:COG3096 481 VCKIAGEVERSQAWQTARELL---------RRYRSQQALAQRL-----------------QQLRAQLAELEQRLRQQQN- 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 775 laqaaawteekARSLTRDLEQSHQEQLLS--LMEKHALEKEELRKELSEYhQRELQEGREEMETE---CNRRVSQIEAQ- 848
Cdd:COG3096 534 -----------AERLLEEFCQRIGQQLDAaeELEELLAELEAQLEELEEQ-AAEAVEQRSELRQQleqLRARIKELAARa 601
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958782428 849 ---FQADcEKVTERCEQTLQSLEGryRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQ 912
Cdd:COG3096 602 pawLAAQ-DALERLREQSGEALAD--SQEVTAAMQQLLEREREATVERDELAARKQALESQIERLSQ 665
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
701-930 |
2.07e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 701 ELQSEIADLQGQAAVLKEAHHKAscrhEEEKKQLQmvfdeektqlqeelRLEHEQELKARLQQAEESFRQEREGLAQAAA 780
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEAL----EDAREQIE--------------LLEPIRELAERYAAARERLAELEYLRAALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 781 WTEEKARSLTRDLEQSHQEQLLSLMEKHAL---EKEELRKELSEYHQRELQEGREEMEtECNRRVSQIEAQfQADCEKVT 857
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERleaRLDALREELDELEAQIRGNGGDRLE-QLEREIERLERE-LEERERRR 361
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958782428 858 ERCEQTLQSLEGRY---RQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEvLQREKATAlarSQEQETLEK 930
Cdd:COG4913 362 ARLEALLAALGLPLpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD-LRRELREL---EAEIASLER 433
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
444-914 |
2.47e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.04 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 444 RNEYNLRKLDEEY----------KERIAALKNELRQEREQILQQVGkQRVELEQEIEKAkteenyiRDRLALSlkennrl 513
Cdd:PRK04863 276 RHANERRVHLEEAlelrrelytsRRQLAAEQYRLVEMARELAELNE-AESDLEQDYQAA-------SDHLNLV------- 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 514 eNELLENAEKLAEYENLTSKLQRSLEnvlaekfgdldpsSAEFFLQEerLAQMRNEYEQQCRLLQDQVDELQSELEEYQ- 592
Cdd:PRK04863 341 -QTALRQQEKIERYQADLEELEERLE-------------EQNEVVEE--ADEQQEENEARAEAAEEEVDELKSQLADYQq 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 593 ----AQGRVLRLpcQNALseeldghgdgieQDQEPGSGECNPLNMSIE-AELVIEQLKEQHHrdlchlrlELEDKVRHYE 667
Cdd:PRK04863 405 aldvQQTRAIQY--QQAV------------QALERAKQLCGLPDLTADnAEDWLEEFQAKEQ--------EATEELLSLE 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 668 KQLDHTRVAcekeqvamKQKYEQGMRTLEKQISELQSEIADLQGQAAVLkeahhkascRHEEEKKQLQMVfdeektqlqe 747
Cdd:PRK04863 463 QKLSVAQAA--------HSQFEQAYQLVRKIAGEVSRSEAWDVARELLR---------RLREQRHLAEQL---------- 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 748 elrleheQELKARLQQAEESFRQEREglaqaaawteekARSLTRDLEQSHQEQLLS--LMEKHALEKEELRKELSEYhQR 825
Cdd:PRK04863 516 -------QQLRMRLSELEQRLRQQQR------------AERLLAEFCKRLGKNLDDedELEQLQEELEARLESLSES-VS 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 826 ELQEGREEMETECN------RRVSQIEAQFQADCEKVTERCEQTLQSLEGRyrQELKDLLDQHLEERSQWEFEKDELTQE 899
Cdd:PRK04863 576 EARERRMALRQQLEqlqariQRLAARAPAWLAAQDALARLREQSGEEFEDS--QDVTEYMQQLLERERELTVERDELAAR 653
|
490
....*....|....*
gi 1958782428 900 CTEAQEQLEEVLQRE 914
Cdd:PRK04863 654 KQALDEEIERLSQPG 668
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
741-1060 |
2.80e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.43 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 741 EKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAaawTEEKARSLTR--DLEQSHQEQLLSLMEKHALEKEELRke 818
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQE---KEEKAREVERrrKLEEAEKARQAEMDRQAAIYAEQER-- 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 819 LSEYHQRELQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEER------SQWEFE 892
Cdd:pfam17380 342 MAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEerqrkiQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 893 KDELTQECTEAQEQLEEVLQREKATALARSQEQEtlekthkerlailsMEREQLLQDLKDLQNTSERQHSLLSDQMLELK 972
Cdd:pfam17380 422 MEQIRAEQEEARQREVRRLEEERAREMERVRLEE--------------QERQQQVERLRQQEEERKRKKLELEKEKRDRK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 973 RSQERELREPEHVLCQTgvSEQLGSQQLARLQVEHEQERREMAgkIAALESAHRVSCERADQEKAEmsaEIRRLQSTVKD 1052
Cdd:pfam17380 488 RAEEQRRKILEKELEER--KQAMIEEERKRKLLEKEMEERQKA--IYEEERRREAEEERRKQQEME---ERRRIQEQMRK 560
|
....*...
gi 1958782428 1053 LQQATSLL 1060
Cdd:pfam17380 561 ATEERSRL 568
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
559-1012 |
2.87e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 559 QEERLAQMRNEYEQqCRLLQDQVDELQSELEEYQAQGRVLRLPcQNALSEELDGHGDGIEQDQepgsgecnplnmsIEAE 638
Cdd:COG4717 76 LEEELKEAEEKEEE-YAELQEELEELEEELEELEAELEELREE-LEKLEKLLQLLPLYQELEA-------------LEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 639 LVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKE 718
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 719 AHHKASCRHEEEKKQLQMVFDEEK-TQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAA---WTEEKARSLTRDLE 794
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLgllALLFLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 795 QSHQEQLLSLMEKHALEKEELRKELSEYH-QRELQEGREEMETECNRRVSQIEAQFQADCEKVT-ERCEQTLQSLEGRYR 872
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEELEEELQlEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 873 QELKDLLDQHLEERSQWEfekdELTQECTEAQEQLEEvlQREKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKD 952
Cdd:COG4717 381 VEDEEELRAALEQAEEYQ----ELKEELEELEEQLEE--LLGELEELLEALDEEELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 953 LQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERR 1012
Cdd:COG4717 455 LAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1204-1712 |
3.02e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1204 SELENSEDTRTESWDLKSQIIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLE----RLPEAsSKYKVLYEDAA 1279
Cdd:PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEekvkELKEL-KEKAEEYIKLS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1280 RENACLQEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKMEEVTGTFLSLENSYDEVKlENEKLSALVLRLQGKMEEVL 1359
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1360 ERAAlqgdsyslwegpseNLEVTSDEKMLELHQTEEEctpEVMSRhhiIEECRQETRCCEQGSTQLLAGIKAHEIAwfrr 1439
Cdd:PRK03918 379 KRLT--------------GLTPEKLEKELEELEKAKE---EIEEE---ISKITARIGELKKEIKELKKAIEELKKA---- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1440 kiethQEKPSVQNRVILEESAALLgLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEEELKAV 1519
Cdd:PRK03918 435 -----KGKCPVCGRELTEEHRKEL-LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1520 MHDLQ-ITCGEMQRKVEllryESEKLQEENSILRNEITTLNEEDSisnlKLEELNGSQEELWQKIETIEQEKASIQKMVE 1598
Cdd:PRK03918 509 EEKLKkYNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKLDELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1599 KLK-KQVSDLKLKNQQLDSENKE-LSQKNS-QNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENESLKEELDRYKVQT 1675
Cdd:PRK03918 581 ELGfESVEELEERLKELEPFYNEyLELKDAeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1958782428 1676 -----------STLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQ 1712
Cdd:PRK03918 661 yeelreeylelSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1532-1982 |
3.25e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.33 E-value: 3.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1532 RKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDlklKN 1611
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE---KQ 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1612 QQLDSENKELSQKNSQNKE---ELKTLNQ--------RLAEMLCQKEDPGTCTSEKWEQENE---SLKEELDRYKVQTST 1677
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQlksEISDLNNqkeqdwnkELKSELKNQEKKLEEIQNQISQNNKiisQLNEQISQLKKELTN 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1678 LVS---SLEAELSEVKLQTHIVEQENLLLKDELERLKQlhrcpDLSDFQQKmcsiLSYNENLLKEKEVLSEELKScadkl 1754
Cdd:TIGR04523 354 SESensEKQRELEEKQNEIEKLKKENQSYKQEIKNLES-----QINDLESK----IQNQEKLNQQKDEQIKKLQQ----- 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1755 aESSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQL 1834
Cdd:TIGR04523 420 -EKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1835 QNAIDKdwVSETATHLSGLQGQQKRLSwNKLDHLMSEEPELLcQESKRLQTVVQNTQADLTHSREKIRQLESNlLPTKHQ 1914
Cdd:TIGR04523 499 KKLNEE--KKELEEKVKDLTKKISSLK-EKIEKLESEKKEKE-SKISDLEDELNKDDFELKKENLEKEIDEKN-KEIEEL 573
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958782428 1915 KQLNQSCTVKPIEQEKLALKRECEQSrKERSPTSRKVSQMSSLERELETIHLENEGLKKKQVRLDEKL 1982
Cdd:TIGR04523 574 KQTQKSLKKKQEEKQELIDQKEKEKK-DLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKK 640
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1532-1811 |
3.28e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 52.24 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1532 RKVELL---RYES---EKLQEENSIlrnEITTLNEEdsISNLKLEELNGSQEELWQKIETIEQ-------EKASIQKM-V 1597
Cdd:PRK05771 7 KKVLIVtlkSYKDevlEALHELGVV---HIEDLKEE--LSNERLRKLRSLLTKLSEALDKLRSylpklnpLREEKKKVsV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1598 EKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQK---EDP-------------GTCTSEKWE--- 1658
Cdd:PRK05771 82 KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGnfdLDLslllgfkyvsvfvGTVPEDKLEelk 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1659 QENESLKEELDRYKVQTSTLVSSLEAELSEvklqthivEQENLLLKDELERLKqlhrCPDLSDFQQKMCSILSYNENLLK 1738
Cdd:PRK05771 162 LESDVENVEYISTDKGYVYVVVVVLKELSD--------EVEEELKKLGFERLE----LEEEGTPSELIREIKEELEEIEK 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1739 EKEVLSEELKSCADKLAEssllehRIATIKEEREAwEEQSQDLKSQLALSQ-----------EKVQNLEDILKNVNLQMA 1807
Cdd:PRK05771 230 ERESLLEELKELAKKYLE------ELLALYEYLEI-ELERAEALSKFLKTDktfaiegwvpeDRVKKLKELIDKATGGSA 302
|
....
gi 1958782428 1808 QIES 1811
Cdd:PRK05771 303 YVEF 306
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1457-1827 |
4.00e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 4.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1457 EESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEEELKAVMHDLQITCGEMQRKVEL 1536
Cdd:COG4717 78 EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1537 ---LRYESEKLQEENSILRNEITTLNEEDSISNLK-LEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLklknq 1612
Cdd:COG4717 158 lreLEEELEELEAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL----- 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1613 QLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTS-------------------EKWEQENESLKEELDRYKV 1673
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlgllallflllAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1674 QTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHRcpDLSDFQQKM--CSILSYNENLLKEKEVLSEE----- 1746
Cdd:COG4717 313 LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR--EAEELEEELqlEELEQEIAALLAEAGVEDEEelraa 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1747 ---LKSCADKLAESSLLEHRIATIKEER---------EAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESD-- 1812
Cdd:COG4717 391 leqAEEYQELKEELEELEEQLEELLGELeellealdeEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDge 470
|
410
....*....|....*
gi 1958782428 1813 LQVTRQEKEALKQEV 1827
Cdd:COG4717 471 LAELLQELEELKAEL 485
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
461-939 |
4.10e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 461 AALKNELRQEREQILQQVGKQRVELEQEIEKAKTEenyiRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLEN 540
Cdd:COG4717 45 AMLLERLEKEADELFKPQGRKPELNLKELKELEEE----LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 541 VlaekfgdldpssaEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRlpcqnALSEELDGHGDGIEQD 620
Cdd:COG4717 121 L-------------EKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELE-----ELEAELAELQEELEEL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 621 QEPGSGEC-NPLNMSIEAELVIEQLKEQHHRDLCHLRLELEDKvrhyEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQI 699
Cdd:COG4717 183 LEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEEL----EEELEQLENELEAAALEERLKEARLLLLIAAAL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 700 SELQSEIADLQGQA----------------AVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQ 763
Cdd:COG4717 259 LALLGLGGSLLSLIltiagvlflvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 764 AEESFRQEREGLAQAAAWTEEKARsltRDLEQSHQEQLLSLMEKHALEKEELRKELSEYhqRELQEGREEMEtECNRRVS 843
Cdd:COG4717 339 LLELLDRIEELQELLREAEELEEE---LQLEELEQEIAALLAEAGVEDEEELRAALEQA--EEYQELKEELE-ELEEQLE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 844 QIEAQFQADCEKVT-ERCEQTLQSLEGRyRQELKDLLDQHLEERSQWEFEK---------DELTQECTEAQEQLEEVLQR 913
Cdd:COG4717 413 ELLGELEELLEALDeEELEEELEELEEE-LEELEEELEELREELAELEAELeqleedgelAELLQELEELKAELRELAEE 491
|
490 500
....*....|....*....|....*.
gi 1958782428 914 EKATALARSQEQETLEKTHKERLAIL 939
Cdd:COG4717 492 WAALKLALELLEEAREEYREERLPPV 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1473-1697 |
4.62e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 4.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1473 EATIAELELEKQKLQELTRNLRERVTTLAKQKDA------PSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQE 1546
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEElnkkikDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1547 ENSILRNEITTLNEEDSISNLKLEELNGSQ--------------EELWQKIETIE-------QEKASIQKMVEKLKKQVS 1605
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRdklteeyaelkeelEDLRAELEEVDkefaetrDELKDYREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1606 DLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKwEQENESLKEELDRYKVQ---TSTLVSSL 1682
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ-EWKLEQLAADLSKYEQElydLKEEYDRV 481
|
250
....*....|....*
gi 1958782428 1683 EAELSEVKLQTHIVE 1697
Cdd:TIGR02169 482 EKELSKLQRELAEAE 496
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
407-1052 |
5.20e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 5.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 407 DQVVREKEKLRSDLDKAEKLKSLMASEV--DDHHAAIERRNEYNLRK-------LDEEYKERIAALKNELRQEREQILQQ 477
Cdd:PTZ00121 1039 DDVLKEKDIIDEDIDGNHEGKAEAKAHVgqDEGLKPSYKDFDFDAKEdnradeaTEEAFGKAEEAKKTETGKAEEARKAE 1118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 478 VGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLEnvlAEKFGDLDPSSAEFF 557
Cdd:PTZ00121 1119 EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA---ARKAEEVRKAEELRK 1195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 558 LQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVlRLPCQNALSEELDGHGDGIEQDQEPGSGECNPLNMSIEA 637
Cdd:PTZ00121 1196 AEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA-KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA 1274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 638 ElviEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVA--MKQKYEQGMRTLEKqiSELQSEIADLQGQAAV 715
Cdd:PTZ00121 1275 E---EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA--AKKKAEEAKKAAEAAK 1349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 716 LKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKA-RLQQAEESFRQEREGLAQAAAwTEEKARSLTRDLE 794
Cdd:PTZ00121 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdEAKKKAEEDKKKADELKKAAA-AKKKADEAKKKAE 1428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 795 QSHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADcEKVTERCEQTLQSLEGRYRQE 874
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAE 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 875 LK---DLLDQHLEERSQWEFEKDELTQECTEAQ--EQLEEVLQREKATALARSQEQETLEKTHKERlailsMEREQLLQD 949
Cdd:PTZ00121 1508 AKkkaDEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKKAEEAKKAE-----EDKNMALRK 1582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 950 LKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQtgvSEQLGSQQLARLQVEHEQERREMAGKIA-ALESAHRVS 1028
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK---AEELKKAEEEKKKVEQLKKKEAEEKKKAeELKKAEEEN 1659
|
650 660
....*....|....*....|....
gi 1958782428 1029 CERADQEKAEMSAEIRRLQSTVKD 1052
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKKAEEAKKA 1683
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
391-876 |
5.74e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 5.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 391 ALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLR-----KLDEEYKERIAALKN 465
Cdd:PRK02224 238 EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDllaeaGLDDADAEAVEARRE 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 466 ELRQEREQILQQVGKQRV---ELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENvL 542
Cdd:PRK02224 318 ELEDRDEELRDRLEECRVaaqAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE-L 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 543 AEKFGDL--DPSSAEFFLQE-----ERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQgrvlrlPCQNALSEEldGHGD 615
Cdd:PRK02224 397 RERFGDApvDLGNAEDFLEElreerDELREREAELEATLRTARERVEEAEALLEAGKCP------ECGQPVEGS--PHVE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 616 GIEQDQEPGSgecnplnmSIEAELviEQLKEQhhRDLCHLRLELEDKVRHYEKQLDHTRvacEKEQVAMKQKYEQGMRTL 695
Cdd:PRK02224 469 TIEEDRERVE--------ELEAEL--EDLEEE--VEEVEERLERAEDLVEAEDRIERLE---ERREDLEELIAERRETIE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 696 EK--QISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQmVFDEEKTQLQEEL----RLEHEQELKARLQQAEESFR 769
Cdd:PRK02224 534 EKreRAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA-ELNSKLAELKERIesleRIRTLLAAIADAEDEIERLR 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 770 QEREGLAQAAAWTEEK---ARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYhQRELQEGREEMETECNRRVSQIE 846
Cdd:PRK02224 613 EKREALAELNDERRERlaeKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK-LDELREERDDLQAEIGAVENELE 691
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1958782428 847 --AQFQADCEKVTERCE---------QTLQSLEGRYRQELK 876
Cdd:PRK02224 692 elEELRERREALENRVEalealydeaEELESMYGDLRAELR 732
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1480-1802 |
6.59e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 6.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1480 ELEKQKLQELTRNLRERVTTLAKQkdapSQGEEEEELKAvmhdlqitcgEMQRKVELLRYESEKLQEENSILRNEITTLN 1559
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEE----AKKAEEAKIKA----------EELKKAEEEKKKVEQLKKKEAEEKKKAEELK 1653
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1560 EEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKlKNQQLDSENKELSQKNSQNKEElKTLNQRL 1639
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEELKKA-EEENKIK 1731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1640 AEMLCQKEDpgtctsEKWEQENESLKEELDRYKVQtsTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHRCPDL 1719
Cdd:PTZ00121 1732 AEEAKKEAE------EDKKKAEEAKKDEEEKKKIA--HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1720 SDFQQKMcsILSYNENLL---KEKEVLSEELKSCADklAESSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKvQNLE 1796
Cdd:PTZ00121 1804 FDNFANI--IEGGKEGNLvinDSKEMEDSAIKEVAD--SKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK-DLKE 1878
|
....*.
gi 1958782428 1797 DILKNV 1802
Cdd:PTZ00121 1879 DDEEEI 1884
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
377-1060 |
7.35e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 7.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 377 ENELLVTKNGIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERrneynlrkldeey 456
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG------------- 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 457 kerIAALKNELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRlalslkennrlenellenAEKLAEYENLTSKLQR 536
Cdd:TIGR02169 432 ---IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL------------------KEEYDRVEKELSKLQR 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 537 SLENVLAEKfGDLDPSSAEFFLQEERLaqmrneyEQQCRLLQDQVDELQSELEEYQAQGRVL---RLpcQNALSEELDGH 613
Cdd:TIGR02169 491 ELAEAEAQA-RASEERVRGGRAVEEVL-------KASIQGVHGTVAQLGSVGERYATAIEVAagnRL--NNVVVEDDAVA 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 614 GDGIE--QDQEPGSGECNPLNMSIEAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQG 691
Cdd:TIGR02169 561 KEAIEllKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYR 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 692 MRTLEkqiselqSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDeektqlqeelRLEHEQELKARLQQAEESFRQE 771
Cdd:TIGR02169 641 MVTLE-------GELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRE----------RLEGLKRELSSLQSELRRIENR 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 772 REGLAQAAAWTEEKARSLTRDLEQshqeqllsLMEKHALEKEELrkELSEYHQRELQEGREEMETECNRRVSQIEAQfQA 851
Cdd:TIGR02169 704 LDELSQELSDASRKIGEIEKEIEQ--------LEQEEEKLKERL--EELEEDLSSLEQEIENVKSELKELEARIEEL-EE 772
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 852 DCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFEKDELTQEcTEAQEQLEEVLQREKATALARSQEQETLEKT 931
Cdd:TIGR02169 773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK-LNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 932 HKERLAILSMEREQLLQDLKDLQNtSERQhslLSDQMLELKRsqERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQER 1011
Cdd:TIGR02169 852 IEKEIENLNGKKEELEEELEELEA-ALRD---LESRLGDLKK--ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 1958782428 1012 REmagkIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLL 1060
Cdd:TIGR02169 926 LE----ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
878-1715 |
9.56e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 9.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 878 LLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKDL--QN 955
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLlqEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 956 TSERQHSLLSDQMLELKRSQERELREPEHVLCQTgvSEQLGSQQLARLQVEHEQERREMAGKIAALESAHRVScERADQE 1035
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK--EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL-KESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1036 KAEMSAEIRRLQSTVKDLQQATSLLVLQGGCRATAGEEAEGNGALSLLQQGEQLL------EENGDVLISLQKAHERAVK 1109
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAkkklesERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1110 ENAKMATEISRLQQRLKKLEPGSAISSCLEERMTEISGSSREHAEPV-MKRGTATKHFLSDPGDHEAQGLGSTGTSSVQR 1188
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1189 QECRTEESEASLECFSELENSEDTRTESWDLKSQIIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEAS 1268
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1269 SKYKVLYEDAARENAcLQEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKMEEVTGTFLSLENSYDEVKLENEKLSALV 1348
Cdd:pfam02463 563 RQKLVRALTELPLGA-RKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1349 LRLQGKMEEVLERAALQGDSYSLWEGPSENLEVTSDEKMLELHQTEEECTPEVMSRHHIIEECRQETRCCEQGSTQLLAG 1428
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEE 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1429 IKAHEIAWFRRKIETHQEKpsvQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPS 1508
Cdd:pfam02463 722 LLADRVQEAQDKINEELKL---LKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1509 QGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSIsnlKLEELNGSQEELWQKIETIEQ 1588
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE---ELERLEEEITKEELLQELLLK 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1589 EKASIQKMVEKLKKQVsdLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENE-----S 1663
Cdd:pfam02463 876 EEELEEQKLKDELESK--EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEkekeeN 953
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 1958782428 1664 LKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHR 1715
Cdd:pfam02463 954 NKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKK 1005
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
558-981 |
1.01e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.11 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 558 LQEERLAQMRNEYEQQcrllqdqvDELQSELE-EYQAQGRVLRLpCQNALseeldGHGDGIEQDQEpgsgECNPLNMSI- 635
Cdd:COG3096 303 EEQYRLVEMARELEEL--------SARESDLEqDYQAASDHLNL-VQTAL-----RQQEKIERYQE----DLEELTERLe 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 636 EAELVIEQLKEQHHRdlCHLRLEL-EDKVRHYEKQLDHTRVACEKEQVAMKQkYEQGMRTLEKqiSELQSEIADLQGQAA 714
Cdd:COG3096 365 EQEEVVEEAAEQLAE--AEARLEAaEEEVDSLKSQLADYQQALDVQQTRAIQ-YQQAVQALEK--ARALCGLPDLTPENA 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 715 VLKEAHHKAscrheEEKKQLQMVFD-EEKTQLQEELRLEHEQELKARLQQAEESFRqereglaqAAAWteEKARSLTRDL 793
Cdd:COG3096 440 EDYLAAFRA-----KEQQATEEVLElEQKLSVADAARRQFEKAYELVCKIAGEVER--------SQAW--QTARELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 794 -EQSHQEQLLslmekhalekEELRKELSEYHQRELQegreemetecnrrvsQIEAQFQAdcekvTERCEQTLQSLEGRyr 872
Cdd:COG3096 505 rSQQALAQRL----------QQLRAQLAELEQRLRQ---------------QQNAERLL-----EEFCQRIGQQLDAA-- 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 873 qelkDLLDQHLEErsqWEFEKDELTQECTEAQEQLEEVLQREKATAlarsQEQETLEK------THKERLAILSMEREQL 946
Cdd:COG3096 553 ----EELEELLAE---LEAQLEELEEQAAEAVEQRSELRQQLEQLR----ARIKELAArapawlAAQDALERLREQSGEA 621
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1958782428 947 LQDLKDLQNT------SERQHSLLSDQMLELKRSQERELRE 981
Cdd:COG3096 622 LADSQEVTAAmqqlleREREATVERDELAARKQALESQIER 662
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
553-1129 |
2.10e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 553 SAEFFLQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELDGHGDGIEQDQEPGSGECNPLN 632
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKM 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 633 MSIEAELVIEQLKEQHHRDLCHLRLELEDKVR-HYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQI----------SE 701
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSqEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKttltqklqslCK 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 702 LQSEIADLQGQAAVL---------KEAHHKASCRHEEEKKQLQMVFDEEKTQ---LQEELRLEHEQELKARLQQ------ 763
Cdd:TIGR00618 401 ELDILQREQATIDTRtsafrdlqgQLAHAKKQQELQQRYAELCAAAITCTAQcekLEKIHLQESAQSLKEREQQlqtkeq 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 764 ---AEESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQ------------EQLLSLMEKHALEKEELRKEL-SEYHQREL 827
Cdd:TIGR00618 481 ihlQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQdidnpgpltrrmQRGEQTYAQLETSEEDVYHQLtSERKQRAS 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 828 QEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERsqwEFEKDELTQECTEAQEQL 907
Cdd:TIGR00618 561 LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR---KLQPEQDLQDVRLHLQQC 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 908 EEVLQREKaTALARSQEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSD-----QMLELKRSQE------ 976
Cdd:TIGR00618 638 SQELALKL-TALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWkemlaQCQTLLRELEthieey 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 977 -RELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERREmagKIAALESAHRVSCERA------DQEKAEMSAEIRRLQST 1049
Cdd:TIGR00618 717 dREFNEIENASSSLGSDLAAREDALNQSLKELMHQART---VLKARTEAHFNNNEEVtaalqtGAELSHLAAEIQFFNRL 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1050 VKDLQQATSLLVLQGGCRATAGE---EAEGNGALSLLQQGEQLLEENGDVLISL---QKAHERAVKENAKMATEISRLQQ 1123
Cdd:TIGR00618 794 REEDTHLLKTLEAEIGQEIPSDEdilNLQCETLVQEEEQFLSRLEEKSATLGEIthqLLKYEECSKQLAQLTQEQAKIIQ 873
|
....*.
gi 1958782428 1124 RLKKLE 1129
Cdd:TIGR00618 874 LSDKLN 879
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1444-1974 |
2.30e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.72 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1444 HQEKPSVQNRVILEesAALLGLQGTHLQHEATIAELELEKQKLQELTR--NLRERVTTLAKQKDAPSQGE------EEEE 1515
Cdd:pfam05483 103 QKENKLQENRKIIE--AQRKAIQELQFENEKVSLKLEEEIQENKDLIKenNATRHLCNLLKETCARSAEKtkkyeyEREE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1516 LKAVMHDLQITCGEMqrkveLLRYESEKLQEENSILRNEITTLNEEDSISNLKLE---ELNGSQEE---LWQKIETIEQE 1589
Cdd:pfam05483 181 TRQVYMDLNNNIEKM-----ILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEykkEINDKEKQvslLLIQITEKENK 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1590 KASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKE------DPGTCTSEKWEQENES 1663
Cdd:pfam05483 256 MKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKaleedlQIATKTICQLTEEKEA 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1664 LKEELDRYKVQTSTLVSSLEAELSEVKLqthiveqenlLLKDELERLKQLHRCPDLSDFQ-QKMCSILSYNENLLKEKEV 1742
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEE----------LLRTEQQRLEKNEDQLKIITMElQKKSSELEEMTKFKNNKEV 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1743 LSEELKSCadkLAESSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQ--VTRQEK 1820
Cdd:pfam05483 406 ELEELKKI---LAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEdlKTELEK 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1821 EALKQEVMSLHLQLQNAIDKDWVSETATHLSGLQGQQKRLSWNKldhlmsEEPELLCQESKRLQTVVQNTQADLTHSREK 1900
Cdd:pfam05483 483 EKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCK------KQEERMLKQIENLEEKEMNLRDELESVREE 556
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958782428 1901 IRQLESNL---LPTKHQKQLNQSCTVKPIEQEKLALKRECEQSRKersptsrkvsQMSSLERELETIHLENEGLKKK 1974
Cdd:pfam05483 557 FIQKGDEVkckLDKSEENARSIEYEVLKKEKQMKILENKCNNLKK----------QIENKNKNIEELHQENKALKKK 623
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
345-1013 |
2.36e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 345 QEEGIENSQEILKALDFSLDGNINLTELTLALENELLVTKNGIHQAALAsfKAEIRHLLERVDQVVREKEKLRSDLDKAE 424
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK--KAEKELKKEKEEIEELEKELKELEIKREA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 425 KLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRLA 504
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 505 LSLKENNRLENELLENAEKLAEYENLTSKLQRSLENV-----------------LAEKFGDLDPSSAEFFLQEERLAQMR 567
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSedllketqlvklqeqleLLLSRQKLEERSQKESKARSGLKVLL 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 568 NEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELdghGDGIEQDQEPGSGECNPLNMSIEAELVIEQLKEQ 647
Cdd:pfam02463 514 ALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSAT---ADEVEERQKLVRALTELPLGARKLRLLIPKLKLP 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 648 HHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRH 727
Cdd:pfam02463 591 LKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 728 EEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEE----SFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLS 803
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKeelkKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 804 LMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADCEKVTERcEQTLQSLEGRYRQELKDLLDQHL 883
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRAL-EEELKEEAELLEEEQLLIEQEEK 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 884 EERSQWEFEKDELtQECTEAQEQLEEVLQREKATALARSQEQETLEKTHK---ERLAILSMEREQLLQDLKDLQNTSERQ 960
Cdd:pfam02463 830 IKEEELEELALEL-KEEQKLEKLAEEELERLEEEITKEELLQELLLKEEEleeQKLKDELESKEEKEKEEKKELEEESQK 908
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 1958782428 961 HSLLSDQMLELKRSQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERRE 1013
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEER 961
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1760-1987 |
2.39e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1760 LEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAID 1839
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1840 KDWVSETATHLSGLqgqqkrlswnkldhLMSEEPELLCQESKRLQTVVQNTQADLTHSREKIRQLEsnllpTKHQKQLNQ 1919
Cdd:COG4942 112 ALYRLGRQPPLALL--------------LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA-----ALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958782428 1920 SCTVKPIEQEKLALKRECEQSRKERSptsrkvSQMSSLERELETIHLENEGLKKKQVRLDEKLMEARR 1987
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQ------KLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
480-833 |
2.52e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 2.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 480 KQRVELEQEIEKakTEENYirDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENVLAEKFGDLDPSSAEFFLQ 559
Cdd:TIGR02168 172 ERRKETERKLER--TRENL--DRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 560 EERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQgrvlrlpcQNALSEELDGHGDGIEqdqepgsgecnplnmsiEAEL 639
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEE--------IEELQKELYALANEIS-----------------RLEQ 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 640 VIEQLKEQHHRdlchlrleLEDKVRHYEKQLDHTRvacekeqvAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEA 719
Cdd:TIGR02168 303 QKQILRERLAN--------LERQLEELEAQLEELE--------SKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 720 HHKASCRHEEEKKQLQM----VFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQ 795
Cdd:TIGR02168 367 LEELESRLEELEEQLETlrskVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
330 340 350
....*....|....*....|....*....|....*...
gi 1958782428 796 SHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREE 833
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
337-535 |
2.86e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 337 VERILDTWQEEGIE-NSQEILKALDFsLDGNINLTELTL-ALENELLVTKNgihQAALASFKAEIRHLLERVDQVVREKE 414
Cdd:COG3206 154 ANALAEAYLEQNLElRREEARKALEF-LEEQLPELRKELeEAEAALEEFRQ---KNGLVDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 415 KLRSDLDKAE----------KLKSLMASEVDDHHAAIERRNEYN-----LRKLDEEYKE---RIAALKNELRQEREQILQ 476
Cdd:COG3206 230 EARAELAEAEarlaalraqlGSGPDALPELLQSPVIQQLRAQLAeleaeLAELSARYTPnhpDVIALRAQIAALRAQLQQ 309
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958782428 477 QVGKQRVELEQEIEKAKTEENYIRDRLAlslkennRLENELLENAEKLAEYENLTSKLQ 535
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLA-------QLEARLAELPELEAELRRLEREVE 361
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
426-1126 |
3.77e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 426 LKSLMASEVDDHHAAIERRNEYN--LRKLDEEYKERIAALKNEL-------RQEREQILQQVGKQRVELEQEIEKAKTEE 496
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNqlLRTLDDQWKEKRDELNGELsaadaavAKDRSELEALEDQHGAFLDADIETAAADQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 497 NYIrDRLALSLKENNRLENELLENAEKL-AEYENLTSKLQRSLENVLAEKFGDLDPSSAEFFLQeerLAQMRNEYEQQCR 575
Cdd:pfam12128 347 EQL-PSWQSELENLEERLKALTGKHQDVtAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQ---LAVAEDDLQALES 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 576 LLQDQVDELQSELEEyQAQGRVLRLpcqnalsEELDGHGDGIEQDQEpgsgecNPLNMSIEAELVIEQLKEQHHRDLCHL 655
Cdd:pfam12128 423 ELREQLEAGKLEFNE-EEYRLKSRL-------GELKLRLNQATATPE------LLLQLENFDERIERAREEQEAANAEVE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 656 RLELEDKV--RHYEKQLDHTRVaCEKEQVAMKQKYEQGMRTLEKQISELqseIADLQGQAAVLKEAHHKASCRHEEEKKQ 733
Cdd:pfam12128 489 RLQSELRQarKRRDQASEALRQ-ASRRLEERQSALDELELQLFPQAGTL---LHFLRKEAPDWEQSIGKVISPELLHRTD 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 734 LQMVFDEEKT--------------QLQEELRLEHEQELKARLQQAEESFRQEREGLAQAaawtEEKARSLTRDLEQSHQE 799
Cdd:pfam12128 565 LDPEVWDGSVggelnlygvkldlkRIDVPEWAASEEELRERLDKAEEALQSAREKQAAA----EEQLVQANGELEKASRE 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 800 QLLSlmeKHALEKEELR-KELSEYHQRE---LQEGREEMETECNRRVSQIEAQfqadcekvterceqtLQSLEGRYRQEL 875
Cdd:pfam12128 641 ETFA---RTALKNARLDlRRLFDEKQSEkdkKNKALAERKDSANERLNSLEAQ---------------LKQLDKKHQAWL 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 876 KDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTH-------KERLAILSMEREQLLQ 948
Cdd:pfam12128 703 EEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDlaslgvdPDVIAKLKREIRTLER 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 949 DLKDLQntSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQlgSQQLARLQVEHEQERREMAGKIAALESAHrvs 1028
Cdd:pfam12128 783 KIERIA--VRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISEL--QQQLARLIADTKLRRAKLEMERKASEKQQ--- 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1029 cERADQEKAEMSAEIRRLqSTVKDLQQAtsllvlqggcratagEEAEGNGALSlLQQGEQLLEENGDVLISLQKAHERAV 1108
Cdd:pfam12128 856 -VRLSENLRGLRCEMSKL-ATLKEDANS---------------EQAQGSIGER-LAQLEDLKLKRDYLSESVKKYVEHFK 917
|
730
....*....|....*....
gi 1958782428 1109 KE-NAKMATEISRLQQRLK 1126
Cdd:pfam12128 918 NViADHSGSGLAETWESLR 936
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1476-1984 |
3.92e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1476 IAELELEKQKLQELTRNLRERVTTLAKQ-KDAPSQGEEEEELKAVMhDLQITCGEMQRKVELLRYESEKLQEENSILRNE 1554
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEiEELEEKVKELKELKEKA-EEYIKLSEFYEEYLDELREIEKRLSRLEEEING 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1555 ITTLNEEDSISNLKLEELNGSQEELWQKIETIE------QEKASIQKMVEKLKKQVSDLKLknQQLDSENKELSQKNSQN 1628
Cdd:PRK03918 326 IEERIKELEEKEERLEELKKKLKELEKRLEELEerhelyEEAKAKKEELERLKKRLTGLTP--EKLEKELEELEKAKEEI 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1629 KEELKTLNQRLAEMLCQKED-----------PGTCTSEKWEQENESLKEELDRYKVQtstlVSSLEAELSEVKLQTHIVE 1697
Cdd:PRK03918 404 EEEISKITARIGELKKEIKElkkaieelkkaKGKCPVCGRELTEEHRKELLEEYTAE----LKRIEKELKEIEEKERKLR 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1698 QENLLLKDELERLKQLHRCPDLSDFQQKMCSILS-YNENLLKEKEVLSEELKSCADKLaessllEHRIATIKEEREAWEE 1776
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKkYNLEELEKKAEEYEKLKEKLIKL------KGEIKSLKKELEKLEE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1777 qsqdLKSQLALSQEKVQNLEDILKNVNLQMAQI----ESDLQVTRQEKEALKQEVMSLhlqlqnaidKDWVSEtathlsg 1852
Cdd:PRK03918 554 ----LKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPFYNEYLEL---------KDAEKE------- 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1853 LQGQQKRLSWNKLDHLMSEEPellcqeskrlqtvVQNTQADLTHSREKIRQLESNLLPTKHQKqlnqsctvkpIEQEKLA 1932
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEE-------------LAETEKRLEELRKELEELEKKYSEEEYEE----------LREEYLE 670
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1958782428 1933 LKREceqsrkerspTSRKVSQMSSLERELETIHLENEGLKKKQVRLDEKLME 1984
Cdd:PRK03918 671 LSRE----------LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
388-913 |
8.56e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 8.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 388 HQAALASFKAEIRHLLERVDQVvrEKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYN--LRKLDEEYKERIAALKn 465
Cdd:COG4913 307 LEAELERLEARLDALREELDEL--EAQIRGNGGDRLEQLEREIERLERELEERERRRARLEalLAALGLPLPASAEEFA- 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 466 ELRQEREQILQQVGKQRVELEQEIEKAKTEENYIRDRLAlslkennRLENEL--LENAEKlaeyeNLTSKLQRSLEnVLA 543
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR-------ELEAEIasLERRKS-----NIPARLLALRD-ALA 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 544 EKFGdLDPSSAEFFLQeerLAQMRNEYE------------QQCRLL--QDQVDELQSELEEYQAQGRVlrlpcqnalsee 609
Cdd:COG4913 451 EALG-LDEAELPFVGE---LIEVRPEEErwrgaiervlggFALTLLvpPEHYAAALRWVNRLHLRGRL------------ 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 610 ldgHGDGIEQDQEPGSGECNPLNmSIEAELVIEQ------LKEQHHRDLCHLRLELEDKVRHYEK------QLDHTRVAC 677
Cdd:COG4913 515 ---VYERVRTGLPDPERPRLDPD-SLAGKLDFKPhpfrawLEAELGRRFDYVCVDSPEELRRHPRaitragQVKGNGTRH 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 678 EKE-QVAMKQKY------EQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKT-QLQEEL 749
Cdd:COG4913 591 EKDdRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVaSAEREI 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 750 -RLEHE-----------QELKARLQQAEESF---RQEREGLAQAAAWTEEKARSLTRDLEQShQEQLLSLMEKHALE--- 811
Cdd:COG4913 671 aELEAElerldassddlAALEEQLEELEAELeelEEELDELKGEIGRLEKELEQAEEELDEL-QDRLEAAEDLARLElra 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 812 ------KEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGR--YRQELKDLLDQHL 883
Cdd:COG4913 750 lleerfAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLpeYLALLDRLEEDGL 829
|
570 580 590
....*....|....*....|....*....|....*.
gi 1958782428 884 EE-RSQW-----EFEKDELTQECTEAQEQLEEVLQR 913
Cdd:COG4913 830 PEyEERFkellnENSIEFVADLLSKLRRAIREIKER 865
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
449-1168 |
1.09e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 449 LRKLDEE----------YKERIAALKNELRQEREQILQQvgkQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELl 518
Cdd:pfam15921 226 LRELDTEisylkgrifpVEDQLEALKSESQNKIELLLQQ---HQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQL- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 519 ENAEKLAEYENltSKLQRSLENVlaekfgdldpssaefflqEERLAQMRNEYEQQCRLLQDQVDELQSELeeyqaqgrVL 598
Cdd:pfam15921 302 EIIQEQARNQN--SMYMRQLSDL------------------ESTVSQLRSELREAKRMYEDKIEELEKQL--------VL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 599 rlpcqnALSEELDGHGDGIEQDQEPGsgecnplNMSIEAELVIEQLkeqhHRDLCHLRLELEDKVRHYEKQLDHTrvace 678
Cdd:pfam15921 354 ------ANSELTEARTERDQFSQESG-------NLDDQLQKLLADL----HKREKELSLEKEQNKRLWDRDTGNS----- 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 679 keqvamkqkyeqgmRTLEKQISELQSEIADLQGQAAVLKEAhhKASCRHEEEKkqlQMVFDEEKTQlqeelRLEHEQELK 758
Cdd:pfam15921 412 --------------ITIDHLRRELDDRNMEVQRLEALLKAM--KSECQGQMER---QMAAIQGKNE-----SLEKVSSLT 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 759 ARLQQAEESFRQEREGLAQAAAWTEEKARSLTrDLEQSHQEQLLSLMEKHAlEKEELRKELsEYHQRELQEGREE----- 833
Cdd:pfam15921 468 AQLESTKEMLRKVVEELTAKKMTLESSERTVS-DLTASLQEKERAIEATNA-EITKLRSRV-DLKLQELQHLKNEgdhlr 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 834 -METECNRRVSQIeaqfqADCEKVTERCEQTLQSlegryrqeLKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEV-L 911
Cdd:pfam15921 545 nVQTECEALKLQM-----AEKDKVIEILRQQIEN--------MTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFkI 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 912 QREKATALARSQEQET----LEKTH-----KERLAI---LSMEREQLLQDLKdlqnTSERQHSLLSDQMLELKRSQEREL 979
Cdd:pfam15921 612 LKDKKDAKIRELEARVsdleLEKVKlvnagSERLRAvkdIKQERDQLLNEVK----TSRNELNSLSEDYEVLKRNFRNKS 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 980 REPEhvlcqtgVSEQLGSQQLARLQVEHEQERREMAGKIAALESAHRVSCERADQEKAEmSAEIRRLQSTVKDLQQATSL 1059
Cdd:pfam15921 688 EEME-------TTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAK-RGQIDALQSKIQFLEEAMTN 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1060 L------------VLQGGCRATAGEEAEGNGALSLLQQGEQLLEE---NGDVLI---SLQKAHERAVKENAKMATEISRL 1121
Cdd:pfam15921 760 AnkekhflkeeknKLSQELSTVATEKNKMAGELEVLRSQERRLKEkvaNMEVALdkaSLQFAECQDIIQRQEQESVRLKL 839
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1122 QQRL--KKLE-PGSAISSCLEERMTEISGSSREHAEpvMKRGTATKHFLS 1168
Cdd:pfam15921 840 QHTLdvKELQgPGYTSNSSMKPRLLQPASFTRTHSN--VPSSQSTASFLS 887
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
656-1395 |
1.13e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 656 RLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISELQSEIADlqgqAAVLKEAHHKASCRHEEEKKQLQ 735
Cdd:PTZ00121 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAED----ARKAEEARKAEDAKKAEAARKAE 1185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 736 MVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEE---KARSLTRDLEQSHQEQLLSLME------ 806
Cdd:PTZ00121 1186 EVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEakkDAEEAKKAEEERNNEEIRKFEEarmahf 1265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 807 ---KHALEKEELRKELSEYHQRELQEGREEMETECNRRVsqieaqfqadcEKVTERCEQTLQSLEGRYRQELKDLLDQHL 883
Cdd:PTZ00121 1266 arrQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA-----------DEAKKKAEEAKKADEAKKKAEEAKKKADAA 1334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 884 EERSQWEFEKDELTQ-ECTEAQEQLEEVLQREKATALARSQEQETLEKTHKErlailsMEREQLLQDLKDLQNTSERQHS 962
Cdd:PTZ00121 1335 KKKAEEAKKAAEAAKaEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK------AEEKKKADEAKKKAEEDKKKAD 1408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 963 LLSDQMLELKRSQERELREPEhvlcqTGVSEQLGSQQLARLQVEHEQERREMAGKIaalESAHRVSCERADQEKAEMSAE 1042
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEE-----KKKADEAKKKAEEAKKADEAKKKAEEAKKA---EEAKKKAEEAKKADEAKKKAE 1480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1043 IRRLQSTVKDLQQATSLLVLQGGCRATAGEEAEGNGALSLLQQGEQLLE-ENGDVLISLQKAHERAVKENAKMATEISRL 1121
Cdd:PTZ00121 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1122 QQRLKKLEPGSAissclEERMTEISGSSREHAEPVMKRGTATKHFLSDPGDHEAQGLGSTGTSSVQRQECRTEESEASLE 1201
Cdd:PTZ00121 1561 EEKKKAEEAKKA-----EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1202 CFSELENSEDTRteswdlKSQIIQLQEQLTVLRAD--CDRASERKR---DLLFDISVLKKKLKMLERLPEASSKYKVLYE 1276
Cdd:PTZ00121 1636 EQLKKKEAEEKK------KAEELKKAEEENKIKAAeeAKKAEEDKKkaeEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1277 DAARENAcLQEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKMEEVTGTFLSLENSYDEVKLENEKLSALVLRLQGKME 1356
Cdd:PTZ00121 1710 KEAEEKK-KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 1958782428 1357 EVLERAALQ-------GDSYSLWEGPSENLEVTSDEKMLELHQTEE 1395
Cdd:PTZ00121 1789 DEKRRMEVDkkikdifDNFANIIEGGKEGNLVINDSKEMEDSAIKE 1834
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1497-1794 |
1.61e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.82 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1497 VTTLAKQKDAPSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQ 1576
Cdd:PLN02939 33 VSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAID 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1577 EELWQKIETIEQEkASIQ-----KMVEKLKKQVSDL-KLKNQQLDSENKELSQKNSQNKEeLKTLNQRLAE-----MLCQ 1645
Cdd:PLN02939 113 NEQQTNSKDGEQL-SDFQledlvGMIQNAEKNILLLnQARLQALEDLEKILTEKEALQGK-INILEMRLSEtdariKLAA 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1646 KEDPGTctsEKWEQENESLKEELDRYKVQTSTLVSSLEAELSEVKLqthiveqENLLLKDELERLKQlhrcpDLSDFQQK 1725
Cdd:PLN02939 191 QEKIHV---EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKE-------ENMLLKDDIQFLKA-----ELIEVAET 255
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958782428 1726 MCSILSynenLLKEKEVLSEELKSCADKLAESSLLEHRIATIKEerEAWEEQSQDLKSQLALSQEKVQN 1794
Cdd:PLN02939 256 EERVFK----LEKERSLLDASLRELESKFIVAQEDVSKLSPLQY--DCWWEKVENLQDLLDRATNQVEK 318
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
411-885 |
1.79e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 411 REKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYnlrkldEEYKERIAALKNELRQEREQILQQvgKQRVELEQEIE 490
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL------EEELEELEAELEELREELEKLEKL--LQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 491 KAKTEENYIRDRLalslkenNRLENELLENAEKLAEYENLTSKLQRsLENVLAEKFGDLDPSSAEfflQEERLAQMRNEY 570
Cdd:COG4717 136 ALEAELAELPERL-------EELEERLEELRELEEELEELEAELAE-LQEELEELLEQLSLATEE---ELQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 571 EQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQNALSEELDGHGD-------GIEQDQEPGSGECNPLNMSIEAELVIEQ 643
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaaALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 644 LkeqhhrdLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAmKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKA 723
Cdd:COG4717 285 L-------LALLFLLLAREKASLGKEAEELQALPALEELE-EEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 724 ScrhEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEEsFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLS 803
Cdd:COG4717 357 E---ELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEELEE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 804 LMEKHALEKEELRKELSEYHQR--ELQEGREEMETEcnRRVSQIEAQFqadcekvtERCEQTLQSLEGRYR--QELKDLL 879
Cdd:COG4717 433 ELEELEEELEELEEELEELREElaELEAELEQLEED--GELAELLQEL--------EELKAELRELAEEWAalKLALELL 502
|
....*.
gi 1958782428 880 DQHLEE 885
Cdd:COG4717 503 EEAREE 508
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
712-1347 |
1.82e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.99 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 712 QAAVLKEAHHKASCRHEEEKKQLQMVFDEEKT--------QLQEELRLEHEQELKARLQQAEES----FRQEREGLAQAA 779
Cdd:COG5022 794 RLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTikrekklrETEEVEFSLKAEVLIQKFGRSLKAkkrfSLLKKETIYLQS 873
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 780 AWTEEKARSLTRDLEQ-----SHQEQLLSLMEKHALEkeeLRKELSEYHQRELQEGREEMeTECNRRVSQIEAQFQADCE 854
Cdd:COG5022 874 AQRVELAERQLQELKIdvksiSSLKLVNLELESEIIE---LKKSLSSDLIENLEFKTELI-ARLKKLLNNIDLEEGPSIE 949
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 855 KVTERCEQTLQSLEGRYRQ---ELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKT 931
Cdd:COG5022 950 YVKLPELNKLHEVESKLKEtseEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQ 1029
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 932 HKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELREpEHVLCQTGVSEQLgsqqLARLQVEHEQER 1011
Cdd:COG5022 1030 SASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLD-DKQLYQLESTENL----LKTINVKDLEVT 1104
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1012 REMAGKIAALESAHRVSCERADQEKaEMSAEIRRLQSTVKDLQQATS--LLVLQGGCRATAGEEAEGNGALSLLQQGE-- 1087
Cdd:COG5022 1105 NRNLVKPANVLQFIVAQMIKLNLLQ-EISKFLSQLVNTLEPVFQKLSvlQLELDGLFWEANLEALPSPPPFAALSEKRly 1183
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1088 --QLLEENGDVLISLQKAHERAVKEnakMATEISRLQQRLKKLEPGSAISSCLEERMTEISGSSREHAEPVMKRGTATKH 1165
Cdd:COG5022 1184 qsALYDEKSKLSSSEVNDLKNELIA---LFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEK 1260
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1166 FLSDPGDHEAQGLGSTGTSSVQRQECRTEESEASLECFSEL--------------ENSEDTRTESWDLKSQIIQLQEQLT 1231
Cdd:COG5022 1261 LLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALrtkasslrwksateVNYNSEELDDWCREFEISDVDEELE 1340
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1232 VLRadcdRASERKRDLLFDISVLKKKLKMLERL-PEASSKYKVLYEDAARENACLQEELRLMEMRYADS-LDSNKELTAE 1309
Cdd:COG5022 1341 ELI----QAVKVLQLLKDDLNKLDELLDACYSLnPAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQeLQLSLEGKDE 1416
|
650 660 670
....*....|....*....|....*....|....*...
gi 1958782428 1310 VYRLQDEMKKMEEvtgTFLSLENSYDEVKLENEKLSAL 1347
Cdd:COG5022 1417 TEVHLSEIFSEEK---SLISLDRNSIYKEEVLSSLSAL 1451
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
558-807 |
1.93e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 558 LQEERLAQMRNEYEQQCRLLQDQVDELQSELEEYQAQGRVLRLPCQ-NALSEELDghgdgieqdqepgsgecnplnmSIE 636
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEaKLLLQQLS----------------------ELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 637 AELVieQLKEQhhrdlchlRLELEDKVRHYEKQLDhtrvacEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQgqaAVL 716
Cdd:COG3206 226 SQLA--EARAE--------LAEAEARLAALRAQLG------SGPDALPELLQSPVIQQLRAQLAELEAELAELS---ARY 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 717 KEAHHKAScRHEEEKKQLQMVFDEEKTQLQEELRLEhEQELKARLQQAEESFRQEREGLAQAAAwTEEKARSLTRDLEqS 796
Cdd:COG3206 287 TPNHPDVI-ALRAQIAALRAQLQQEAQRILASLEAE-LEALQAREASLQAQLAQLEARLAELPE-LEAELRRLEREVE-V 362
|
250
....*....|.
gi 1958782428 797 HQEQLLSLMEK 807
Cdd:COG3206 363 ARELYESLLQR 373
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
857-1048 |
2.28e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 857 TERCEQTLQSLEGRYRQ-----ELKDLLDQHLEERSQW--EFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLE 929
Cdd:COG4913 247 AREQIELLEPIRELAERyaaarERLAELEYLRAALRLWfaQRRLELLEAELEELRAELARLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 930 KTHKERLAILSMEREQLLQDLKDLQNTSERqhsllsdqmlelkrsQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQ 1009
Cdd:COG4913 327 ELEAQIRGNGGDRLEQLEREIERLERELEE---------------RERRRARLEALLAALGLPLPASAEEFAALRAEAAA 391
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958782428 1010 ERREMAGKIAALESA---HRVSCERADQEKAEMSAEIRRLQS 1048
Cdd:COG4913 392 LLEALEEELEALEEAlaeAEAALRDLRRELRELEAEIASLER 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1430-1640 |
2.41e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1430 KAHEIAWFRRKIETHQEKPSVQNRVILEESAALLGLQGTHLQHEATIAELELEKQKLQeltRNLRERVTTLAKQKDAPSQ 1509
Cdd:COG4942 39 LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR---AELEAQKEELAELLRALYR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1510 GEEEEELKAVMHdlQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQE 1589
Cdd:COG4942 116 LGRQPPLALLLS--PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEAL 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958782428 1590 KASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLA 1640
Cdd:COG4942 194 KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
684-1124 |
2.61e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 684 MKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKkQLQMVFDEEKTQLQEELRLEHEQEL------ 757
Cdd:TIGR00618 213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ-LLKQLRARIEELRAQEAVLEETQERinrark 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 758 KARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQ--SHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEM- 834
Cdd:TIGR00618 292 AAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKraAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREIs 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 835 --ETECNRRVSQIEAQFQADCEKvtercEQTLQSLEGRYRQELKDLLDQHLEERSqwefEKDELTQecTEAQEQLEEVLQ 912
Cdd:TIGR00618 372 cqQHTLTQHIHTLQQQKTTLTQK-----LQSLCKELDILQREQATIDTRTSAFRD----LQGQLAH--AKKQQELQQRYA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 913 REKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQ---ERELREPEHVLCQT 989
Cdd:TIGR00618 441 ELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplCGSCIHPNPARQDI 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 990 GVSEQLGSQQLARLQ--VEHEQERREMAGK-IAALESAHRVS--CERADQEKAEMSAEIRRLQSTVKDLQQATSLLVLQG 1064
Cdd:TIGR00618 521 DNPGPLTRRMQRGEQtyAQLETSEEDVYHQlTSERKQRASLKeqMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT 600
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958782428 1065 gcraTAGEEAEGNGALSLLQQGEQLLEENGDVLISL---QKAHERAVKENAKMATEISRLQQR 1124
Cdd:TIGR00618 601 ----EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLhlqQCSQELALKLTALHALQLTLTQER 659
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
765-981 |
2.81e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 765 EESFRQEREGLAQAAAWTEEKARSLTRDLEQShQEQLLSLMEKHAL-----EKEELRKELSEYhQRELQEGREEMEtECN 839
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEA-EAALEEFRQKNGLvdlseEAKLLLQQLSEL-ESQLAEARAELA-EAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 840 RRVSQIEAQFQADCEKVTE--------RCEQTLQSLEGRYRQELKDLLDQH-----LEErsqwefEKDELTQECTEAQEQ 906
Cdd:COG3206 240 ARLAALRAQLGSGPDALPEllqspviqQLRAQLAELEAELAELSARYTPNHpdviaLRA------QIAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958782428 907 LEEVLQREKATALARSQEQETLEKTHKERLAILSmEREQLLQDLKDLQNTSERQHSLLsdqmleLKRSQERELRE 981
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELP-ELEAELRRLEREVEVARELYESL------LQRLEEARLAE 381
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
389-590 |
3.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 389 QAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLdeeyKERIAALKNELR 468
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA-ELAEL----EKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 469 QEREQILQQVGKQ-----------------------RVELEQEIEKAKTEEnyiRDRLALSLKENNRLENELLENAEKLA 525
Cdd:COG4942 101 AQKEELAELLRALyrlgrqpplalllspedfldavrRLQYLKYLAPARREQ---AEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958782428 526 EYENLTSKLQRSLENVLAEKFGDLDPSSAEFFLQEERLAQMRNEYEQqcrlLQDQVDELQSELEE 590
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE----LEALIARLEAEAAA 238
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1544-1835 |
3.12e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1544 LQEENSILRNEITTLNEEDSISNLKLEELNGS----QEELWQKIETI---EQEKASIQKMVEKLKKQVSDLKLKNQQLDS 1616
Cdd:TIGR04523 73 SNNKIKILEQQIKDLNDKLKKNKDKINKLNSDlskiNSEIKNDKEQKnklEVELNKLEKQKKENKKNIDKFLTEIKKKEK 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1617 ENKELSQKNSQNKEELKTLNQRLAEMLCQKedpgtctsEKWEQENESLKEELDRYKVQTSTLVS------SLEAELSEVK 1690
Cdd:TIGR04523 153 ELEKLNNKYNDLKKQKEELENELNLLEKEK--------LNIQKNIDKIKNKLLKLELLLSNLKKkiqknkSLESQISELK 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1691 LQTHIVEQENLLLKDELERLKQlhrcpDLSDFQQKMCSILSYNENLLKEKEVLSEELKSCADKLAEsslLEHRIATIKEE 1770
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTT-----EISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE---LEKQLNQLKSE 296
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1771 REAWEEQSQ-----DLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQ 1835
Cdd:TIGR04523 297 ISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE 366
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
755-959 |
3.26e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 755 QELKARLQQAEESFRQEREGLAQaaawTEEKARSLTRDLEQSHQEQLLSLMEKHALEKE--ELRKELSEYHQR--ELQEG 830
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAA----LKKEEKALLKQLAALERRIAALARRIRALEQElaALEAELAELEKEiaELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 831 REEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLE-----GRYRQELKDLLDQHLEERSQWEFEKDELTQEcTEAQE 905
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRrlqylKYLAPARREQAEELRADLAELAALRAELEAE-RAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958782428 906 QLEEVLQREKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSER 959
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
496-1045 |
3.27e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 496 ENYIRDRLALSLKENNRLENELLENAEKlaEYENLTSKLQRSlenvlaeKFGDLDPSSAEFFLQEERlAQMRNEYEQQCR 575
Cdd:pfam12128 224 EHWIRDIQAIAGIMKIRPEFTKLQQEFN--TLESAELRLSHL-------HFGYKSDETLIASRQEER-QETSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 576 LLQDQVDELQSELEE---------YQAQGRVLRLPCQNALSEELDGHGDGIEQDQEPG-SGECNPLNMSIEAEL-VIEQL 644
Cdd:pfam12128 294 TLDDQWKEKRDELNGelsaadaavAKDRSELEALEDQHGAFLDADIETAAADQEQLPSwQSELENLEERLKALTgKHQDV 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 645 KEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKqkyeqgmrtlekqiselqseiADLQGQAAVLKEAHHKAS 724
Cdd:pfam12128 374 TAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAE---------------------DDLQALESELREQLEAGK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 725 CRHEEEKKQLQMVFDEEKTQL-------QEELRLEHEQELKARLQQAEESFRQEREGL----AQAAAWTEEKARSLTR-- 791
Cdd:pfam12128 433 LEFNEEEYRLKSRLGELKLRLnqatatpELLLQLENFDERIERAREEQEAANAEVERLqselRQARKRRDQASEALRQas 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 792 ----DLEQSHQEQLLSLMEKHALEKEELRKELSEYHQ-------RELQeGREEMETECNR--------------RVSQIE 846
Cdd:pfam12128 513 rrleERQSALDELELQLFPQAGTLLHFLRKEAPDWEQsigkvisPELL-HRTDLDPEVWDgsvggelnlygvklDLKRID 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 847 AQFQADCEKVTER----CEQTLQSLEGRYRQELKDL--LDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKataLA 920
Cdd:pfam12128 592 VPEWAASEEELRErldkAEEALQSAREKQAAAEEQLvqANGELEKASREETFARTALKNARLDLRRLFDEKQSEK---DK 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 921 RSQEQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQlgSQQL 1000
Cdd:pfam12128 669 KNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARR--SGAK 746
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1958782428 1001 ARLQVEHEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRR 1045
Cdd:pfam12128 747 AELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRR 791
|
|
| CHASE3 |
COG5278 |
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms]; |
686-1125 |
3.32e-04 |
|
Extracytoplasmic sensor domain CHASE3 (specificity unknown) [Signal transduction mechanisms];
Pssm-ID: 444089 [Multi-domain] Cd Length: 530 Bit Score: 45.67 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 686 QKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAE 765
Cdd:COG5278 79 EPYEEARAEIDELLAELRSLTADNPEQQARLDELEALIDQWLAELEQVIALRRAGGLEAALALVRSGEGKALMDEIRARL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 766 ESFRQEREGLAQAAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQI 845
Cdd:COG5278 159 LLLALALAALLLAAAALLLLLLALAALLALAELLLLALARALAALLLLLLLEAELAAAAALLAAAAALAALAALELLAAL 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 846 EAQFQADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQ 925
Cdd:COG5278 239 ALALALLLAALLLALLAALALAALLAAALLALAALLLALAAAAALAAAAALELAAAEALALAELELELLLAAAAAAAAAA 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 926 ETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQLGSQQLARLQV 1005
Cdd:COG5278 319 AAAAAALAALLALALATALAAAAAALALLAALLAEAAAAAAEEAEAAAEAAAAALAGLAEVEAEGAAEAVELEVLAIAAA 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1006 EHEQERREMAGKIAALESAHRVSCERADQEKAEMSAEIRRLQSTVKDLQQATSLLVLQGGCRATAGEEAEGNGALSLLQQ 1085
Cdd:COG5278 399 AAAAAAEAAAAAAAAAAASAAEALELAEALAEALALAEEEALALAAASSELAEAGAALALAAAEALAEELAAVAALAALA 478
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1958782428 1086 GEQLLEENGDVLISLQKAHERAVKENAKMATEISRLQQRL 1125
Cdd:COG5278 479 AAAAALAEAEAAAALAAAAALSLALALAALLLAAAEAALA 518
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1529-1800 |
3.82e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1529 EMQRKVELLRYeSEKLQEENSILRNEITTLneEDSISNLkleelngsQEELWQKIETIEQEKASIQKMVEKLKKQVSDL- 1607
Cdd:TIGR01612 1088 EIKEKLKHYNF-DDFGKEENIKYADEINKI--KDDIKNL--------DQKIDHHIKALEEIKKKSENYIDEIKAQINDLe 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1608 KLKNQQLDSENKELSQKNSQN-----------KEELKTLNQRLAEMLCQK---EDPGTCTSEKWEQENESLKEELDRYKV 1673
Cdd:TIGR01612 1157 DVADKAISNDDPEEIEKKIENivtkidkkkniYDEIKKLLNEIAEIEKDKtslEEVKGINLSYGKNLGKLFLEKIDEEKK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1674 QTSTLVSSLEA---ELSEVKLQTHIVEQENLLLKDELERLKQLhrcpDLSDFQQKMCSILSYNENllkekEVLSEeLKSC 1750
Cdd:TIGR01612 1237 KSEHMIKAMEAyieDLDEIKEKSPEIENEMGIEMDIKAEMETF----NISHDDDKDHHIISKKHD-----ENISD-IREK 1306
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1751 ADKLAESSLLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILK 1800
Cdd:TIGR01612 1307 SLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILK 1356
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
681-918 |
3.91e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 3.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 681 QVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAVLKEAHHKASCRHEEEKKQLQmVFDEEKTQLQEELRleheqELKAR 760
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR-ALEQELAALEAELA-----ELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 761 LQQAEESFRQEREGLAQ--AAAWTEEKARSLTRDLEQSHQEQLLSLMEKHALEKEELRKELSEY--HQRELQEGREEMET 836
Cdd:COG4942 92 IAELRAELEAQKEELAEllRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELraDLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 837 ECNRRVSQIEAQfqadcekvtERCEQTLQSLegryRQELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQREKA 916
Cdd:COG4942 172 ERAELEALLAEL---------EEERAALEAL----KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
..
gi 1958782428 917 TA 918
Cdd:COG4942 239 AA 240
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
410-994 |
5.44e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 410 VREKEKLR--SDLDKAEKLKSLMASEVDDHHA--AIERRNEYNLRKLDE----EYKERIAALKNELRQEREQILQQVGKQ 481
Cdd:PTZ00121 1211 ERKAEEARkaEDAKKAEAVKKAEEAKKDAEEAkkAEEERNNEEIRKFEEarmaHFARRQAAIKAEEARKADELKKAEEKK 1290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 482 RV-ELEQEIEKAKTEENYIR---DRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLENVLAEKFGDLDPSSAEFF 557
Cdd:PTZ00121 1291 KAdEAKKAEEKKKADEAKKKaeeAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 558 LQEERLAQMRNEYEQQCRLLQdQVDELQSELEEYQAQGRVLRLpcqnalSEELDGHGDGIEQDQEPGSgecnplnmsiEA 637
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKK-KADEAKKKAEEDKKKADELKK------AAAAKKKADEAKKKAEEKK----------KA 1433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 638 ELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDHTRVACE-KEQVAMKQKYEQGMRTLE--KQISELQSEIADLQGQAA 714
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEaKKKAEEAKKADEAKKKAEeaKKKADEAKKAAEAKKKAD 1513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 715 VLKEAHHKascRHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLE 794
Cdd:PTZ00121 1514 EAKKAEEA---KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 795 QSHQEQLLSLMEKHALEK-EELRKELSEYHQRElQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYRQ 873
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKaEEAKKAEEAKIKAE-ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 874 ELKDLLDQHlEERSQWEFEKDELTQECTEAQEQLE-EVLQREKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKD 952
Cdd:PTZ00121 1670 AEEDKKKAE-EAKKAEEDEKKAAEALKKEAEEAKKaEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1958782428 953 LQNTSERQHSLLSDQMLELKRSQerELREPEHVLCQTGVSEQ 994
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAE--EIRKEKEAVIEEELDEE 1788
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1511-1708 |
8.19e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 8.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1511 EEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEK 1590
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1591 ASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEDPGTCTSEKWEQENESLKEELDR 1670
Cdd:COG4372 111 EELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLK 190
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958782428 1671 YKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELE 1708
Cdd:COG4372 191 EANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLE 228
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
434-800 |
9.87e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 9.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 434 VDDHHAAIERRNEYNLRKLDEEykeriaalknELRQEREQILQQVGKQRveleqEIEKAKTEENYIRDRLALSLKENNRL 513
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQE----------RLRQEKEEKAREVERRR-----KLEEAEKARQAEMDRQAAIYAEQERM 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 514 ENELLENAEKLAEYENltsklQRSLENVLAEKFG-DLDPSSAEFFLQEERlaQMRNEYEQQ----CRLLQDQVDELQSEL 588
Cdd:pfam17380 343 AMERERELERIRQEER-----KRELERIRQEEIAmEISRMRELERLQMER--QQKNERVRQeleaARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 589 EEYQAQGRVLRLPCQNALSEELdghgdgieqdqepgsgecnplnmsieaelviEQLKEQHHRDLCHLRLELEDK------ 662
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQREV-------------------------------RRLEEERAREMERVRLEEQERqqqver 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 663 VRHYEKQLDHTRVACEKEQVAMKQKYEQGMRTLEKQISElqseiadlqGQAAVLKEAHHKASCRHEEEKKQLQMVFDEEK 742
Cdd:pfam17380 465 LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE---------RKQAMIEEERKRKLLEKEMEERQKAIYEEERR 535
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958782428 743 TQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAaawteEKARSLTRDLEQSHQEQ 800
Cdd:pfam17380 536 REAEEERRKQQEMEERRRIQEQMRKATEERSRLEAM-----EREREMMRQIVESEKAR 588
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
726-874 |
1.03e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 44.09 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 726 RHEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQ--------SH 797
Cdd:PRK00106 50 KAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENlsskektlES 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 798 QEQLLSLMEKHALEKEELRKELSEYHQRELQ--------EGREEMETECNRRVSQIEAQFQADCEK-VTERCE------- 861
Cdd:PRK00106 130 KEQSLTDKSKHIDEREEQVEKLEEQKKAELErvaalsqaEAREIILAETENKLTHEIATRIREAEReVKDRSDkmakdll 209
|
170
....*....|....
gi 1958782428 862 -QTLQSLEGRYRQE 874
Cdd:PRK00106 210 aQAMQRLAGEYVTE 223
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
884-1710 |
1.10e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 884 EERSQWEFEKDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHKERlailsmeREQLLQDLKDLQNTSERQHSL 963
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAK-------RVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 964 LSDQMLELKRSQEreLREPEHVLCQTGVSEQLGSQQLARLQVEHEQERREMAGKIAALESAHRVsceRADQEKAEMSAEI 1043
Cdd:PTZ00121 1174 DAKKAEAARKAEE--VRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA---KKDAEEAKKAEEE 1248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1044 RRLQSTVKDLQQATSLLVlqggcRATAGEEAEGNGALSLLQQGEQLLEENgdvliSLQKAHE-RAVKENAKMATEISRLQ 1122
Cdd:PTZ00121 1249 RNNEEIRKFEEARMAHFA-----RRQAAIKAEEARKADELKKAEEKKKAD-----EAKKAEEkKKADEAKKKAEEAKKAD 1318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1123 QRLKKLEPGSAISSCLEERMTEisgsSREHAEPVMKRGTATKHflsdpgdhEAQGLGSTGTSSVQRQECRTEESEASLEC 1202
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEE----AKKAAEAAKAEAEAAAD--------EAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1203 FSELENSEDTRTESWDLKSQIIQLQ----EQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDA 1278
Cdd:PTZ00121 1387 AEEKKKADEAKKKAEEDKKKADELKkaaaAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKA 1466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1279 ARENACLQEELRLMEMRYADSLDSNKEltaEVYRLQDEMKKMEEVTGTFLSLENS-----YDEVKLENEKLSALVLRlqg 1353
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAE---EAKKKADEAKKAAEAKKKADEAKKAeeakkADEAKKAEEAKKADEAK--- 1540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1354 KMEEVLERAALQgdsyslwegPSENLEVTSDEKMLELHQTEEECTPEVMSRHHI---IEECRQETRC----------CEQ 1420
Cdd:PTZ00121 1541 KAEEKKKADELK---------KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEakkAEEARIEEVMklyeeekkmkAEE 1611
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1421 GSTQLLAGIKAHEIawfrRKIETHQEKPSVQNRVILEESAALLGLQGthlQHEATIAELELEKQKLQELTRNLRERVTTL 1500
Cdd:PTZ00121 1612 AKKAEEAKIKAEEL----KKAEEEKKKVEQLKKKEAEEKKKAEELKK---AEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1501 AKQKDAPSQGEEEEELKAVMHDLQITCGEMQRKVELLRyeseKLQEENSILRNEITTLNEEDsisNLKLEELNGSQEELw 1580
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK----KAEEENKIKAEEAKKEAEED---KKKAEEAKKDEEEK- 1756
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1581 QKIETIEQEKASIQKMVEKLKKQV--SDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEML-CQKEDPGTCTSEKW 1657
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAVieEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVInDSKEMEDSAIKEVA 1836
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958782428 1658 EQENESLKE--ELDRYKVQTSTLVSSLEAELSEVKLQTHIVE--QENLLLKDELERL 1710
Cdd:PTZ00121 1837 DSKNMQLEEadAFEKHKFNKNNENGEDGNKEADFNKEKDLKEddEEEIEEADEIEKI 1893
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1472-1835 |
1.15e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1472 HEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEE-EELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSI 1550
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREElETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1551 LRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNS---- 1626
Cdd:PRK02224 291 LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAeles 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1627 ----------QNKEELKTLNQRLAEMLCQKEDPGTcTSEKWEQENESLKEELDRYKVQtstlVSSLEAELSEVklqthiv 1696
Cdd:PRK02224 371 eleeareaveDRREEIEELEEEIEELRERFGDAPV-DLGNAEDFLEELREERDELRER----EAELEATLRTA------- 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1697 eQENLllkDELERLKQLHRCPD-------------LSDFQQKMCSIlsynENLLKEKEVLSEELKSCADKLAESSLLEHR 1763
Cdd:PRK02224 439 -RERV---EEAEALLEAGKCPEcgqpvegsphvetIEEDRERVEEL----EAELEDLEEEVEEVEERLERAEDLVEAEDR 510
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958782428 1764 IATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQ 1835
Cdd:PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA 582
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
803-952 |
1.53e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 803 SLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADcekVTERcEQTLQSLEGRYRQElKDLLDQH 882
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKE---LRER-RNELQKLEKRLLQK-EENLDRK 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958782428 883 LEErsqwefekdeLTQECTEAQEQLEEVLQREKaTALARSQEQETLEKTHKERL---AILSME--REQLLQDLKD 952
Cdd:PRK12704 102 LEL----------LEKREEELEKKEKELEQKQQ-ELEKKEEELEELIEEQLQELeriSGLTAEeaKEILLEKVEE 165
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
414-976 |
1.76e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 414 EKLRSDLDKAEKLKSLMASEVDDHHAAIERRNEyNLRKLDEEYKERIAALKNELRQErEQILQQVGKQRVELEQEIEKAK 493
Cdd:pfam01576 144 EDQNSKLSKERKLLEERISEFTSNLAEEEEKAK-SLSKLKNKHEAMISDLEERLKKE-EKGRQELEKAKRKLEGESTDLQ 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 494 TEENYIRDRLALSLKENNRLENEL---LENAEKLAEYENLTSKLQRSLENVLAEKFGDLdpssaefflqeERLAQMRNEY 570
Cdd:pfam01576 222 EQIAELQAQIAELRAQLAKKEEELqaaLARLEEETAQKNNALKKIRELEAQISELQEDL-----------ESERAARNKA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 571 EQQCRLLQDQVDELQSELEEyqaqgrvlrlpcqnalseeldghgdgieqdqepgsgecnplnmSIEAELVIEQLKEQHHR 650
Cdd:pfam01576 291 EKQRRDLGEELEALKTELED-------------------------------------------TLDTTAAQQELRSKREQ 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 651 DLCHLRLELEDKVRHYEKQLDHTRVACEKEQVAMKQKYEQGMR---TLEKQISELQSEIADLQGQAAVLKEAHHKASCRH 727
Cdd:pfam01576 328 EVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRnkaNLEKAKQALESENAELQAELRTLQQAKQDSEHKR 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 728 EEEKKQLQmvfdeektqlqeELRLEHEQELKARLQQAEESFR--QEREGLAQAAAWTEEKARSLTRDLEQSHQEqllsLM 805
Cdd:pfam01576 408 KKLEGQLQ------------ELQARLSESERQRAELAEKLSKlqSELESVSSLLNEAEGKNIKLSKDVSSLESQ----LQ 471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 806 EKHALEKEELRKELSEYHQ-----------RELQEGREEMETECNRRVSQIEAQFqADCEKVTERCEQTLQSLEGRYRQE 874
Cdd:pfam01576 472 DTQELLQEETRQKLNLSTRlrqledernslQEQLEEEEEAKRNVERQLSTLQAQL-SDMKKKLEEDAGTLEALEEGKKRL 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 875 LKDL--LDQHLEERSQ----WEFEKDELTQECTEA-----------------QEQLEEVLQREKATALARSQEQETLEKT 931
Cdd:pfam01576 551 QRELeaLTQQLEEKAAaydkLEKTKNRLQQELDDLlvdldhqrqlvsnlekkQKKFDQMLAEEKAISARYAEERDRAEAE 630
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1958782428 932 HKERLA-ILSMEREqlLQDLKDLQNTSERQHSLLSDQMLELKRSQE 976
Cdd:pfam01576 631 AREKETrALSLARA--LEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
454-594 |
1.96e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 454 EEYKERIAALKNELRQEREQiLQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSK 533
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKE-LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958782428 534 LQRSLENVL--AEKFGDLDPS----SAEFFLQEERLAQMRNEYEQQcrlLQDQVDELQSELEEYQAQ 594
Cdd:COG4942 102 QKEELAELLraLYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPA---RREQAEELRADLAELAAL 165
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1482-1987 |
2.04e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1482 EKQKLQELTRNLRERVTTLAKQKdaPSQGEEEEELKAVMHDLQITCGEMQRKVELLRYESEKLQEENSILRNEITTLNEE 1561
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1562 DSISNLKLEELNGSQEELWQKIEtiEQEKA-SIQKMVEKLKKQVSDLKLK---NQQLDSENKELSQKNSQNKEELKTLNQ 1637
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAE--EKKKAdEAKKKAEEDKKKADELKKAaaaKKKADEAKKKAEEKKKADEAKKKAEEA 1443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1638 RLAEMLCQKEDPGTCTSEKWEQENESLKEELDRYKVQTSTLVSSLEAELSEVKLQThiveqenlllkDELERLKQlhrcp 1717
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA-----------DEAKKAAE----- 1507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1718 dlsdfQQKMCSILSYNENLLKEKEVLSEELKSCADKLAESsllehriatiKEEREAWE-EQSQDLKSQLALSQEKVQNLE 1796
Cdd:PTZ00121 1508 -----AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA----------EEKKKADElKKAEELKKAEEKKKAEEAKKA 1572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1797 DILKNVNLQMAQIesdlqvTRQEKEALKQEVMSLHlqlqnaidkdwvsETATHLSGLQGQQKRLSWNKLDHLMSEEPELL 1876
Cdd:PTZ00121 1573 EEDKNMALRKAEE------AKKAEEARIEEVMKLY-------------EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1877 CQESKRLQTVVQNTQADLTHSREKIRQLESNLLPTKHQKQLNQSCTVKPIEQEKL----ALKRECEQSRKE---RSPTSR 1949
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKkaaeALKKEAEEAKKAeelKKKEAE 1713
|
490 500 510
....*....|....*....|....*....|....*...
gi 1958782428 1950 KVSQMSSLERELETIHLENEGLKKKQVRLDEKLMEARR 1987
Cdd:PTZ00121 1714 EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
661-1026 |
2.09e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 661 DKVRHYEKQLDHTRVACEKEQVAMKQKYEQgmRTLEKQISELQSEIADLQGQAAVLKEAHHKAS---------CRHEEEK 731
Cdd:COG3096 272 DYMRHANERRELSERALELRRELFGARRQL--AEEQYRLVEMARELEELSARESDLEQDYQAASdhlnlvqtaLRQQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 732 KQLQMVFDE--EKTQLQEELRLE-HEQ--ELKARLQQAEESFRQEREGLA----------------QAAAWTEEKARSLT 790
Cdd:COG3096 350 ERYQEDLEEltERLEEQEEVVEEaAEQlaEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtraiqyQQAVQALEKARALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 791 rDLEQSHQEQLLSLMEKHALEKEELRKELSEYHQReLQEGREEmetecnrrVSQIEAQFQADC----EKVTERCEQTLQS 866
Cdd:COG3096 430 -GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQK-LSVADAA--------RRQFEKAYELVCkiagEVERSQAWQTARE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 867 LEGRYRqELKDLLDQHLEERSQW-EFEKDELTQEctEAQEQLEEVLQR-----EKATALARSQ-EQETLEKTHKERLAIL 939
Cdd:COG3096 500 LLRRYR-SQQALAQRLQQLRAQLaELEQRLRQQQ--NAERLLEEFCQRigqqlDAAEELEELLaELEAQLEELEEQAAEA 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 940 SMEREQLLQDLKDLQntseRQHSLLSDQMLELKRSQERELREPEHVLCQTGVSEQLGS--QQLARLQVEHEQERREMAGK 1017
Cdd:COG3096 577 VEQRSELRQQLEQLR----ARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAamQQLLEREREATVERDELAAR 652
|
....*....
gi 1958782428 1018 IAALESAHR 1026
Cdd:COG3096 653 KQALESQIE 661
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
398-1061 |
2.25e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 398 EIRHLLERVDQvvrekekLRSDLDKAEKLkslmaseVDDHHAAIERRNEYNLR-KLDEEYKERIAALKNELRQEREQILQ 476
Cdd:COG3096 506 SQQALAQRLQQ-------LRAQLAELEQR-------LRQQQNAERLLEEFCQRiGQQLDAAEELEELLAELEAQLEELEE 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 477 QV---GKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKLQRSLEnvlaekfgdldpss 553
Cdd:COG3096 572 QAaeaVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLE-------------- 637
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 554 aefflQEERLAQMRNEYEQQCRLLQDQVDELQseleeyQAQG----RVLRLpcQNALSEEL--DGHGDGIEQDQEPGSGE 627
Cdd:COG3096 638 -----REREATVERDELAARKQALESQIERLS------QPGGaedpRLLAL--AERLGGVLlsEIYDDVTLEDAPYFSAL 704
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 628 CNPLNMSI---EAELVIEQLkeqHHRDLCHLRLEL--------EDKVRHYEKQLDHTRVACEKEQVamkqKYEQ------ 690
Cdd:COG3096 705 YGPARHAIvvpDLSAVKEQL---AGLEDCPEDLYLiegdpdsfDDSVFDAEELEDAVVVKLSDRQW----RYSRfpevpl 777
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 691 -GMRTLEKQISELQSEiadlqgqAAVLKEAHHKAScrheeekkqlqmvFDEEKTQlqeelRLEH--EQELKARLQQA--- 764
Cdd:COG3096 778 fGRAAREKRLEELRAE-------RDELAEQYAKAS-------------FDVQKLQ-----RLHQafSQFVGGHLAVAfap 832
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 765 --EESFRQEREGLAQAaawteEKARSLTRDLEQSHQEQLLSLMEKHALekeeLRKELS-------EYHQRELQEGREEME 835
Cdd:COG3096 833 dpEAELAALRQRRSEL-----ERELAQHRAQEQQLRQQLDQLKEQLQL----LNKLLPqanlladETLADRLEELREELD 903
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 836 tecnrrvsqiEAQfqaDCEKVTERCEQTLQSLEgryrqELKDLLDQHLEERSQWEFEKDELTQECTEAQEQ---LEEVLQ 912
Cdd:COG3096 904 ----------AAQ---EAQAFIQQHGKALAQLE-----PLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQifaLSEVVQ 965
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 913 REkaTALARSQEQETLEKTH------KERLAILSMEREQLLQDLKDLQNTSERQHSLLSDqmleLKRSQE---RELREPE 983
Cdd:COG3096 966 RR--PHFSYEDAVGLLGENSdlneklRARLEQAEEARREAREQLRQAQAQYSQYNQVLAS----LKSSRDakqQTLQELE 1039
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958782428 984 HVLCQTGVSEQLGSQQLARLQV-EHEQERREMAGKIAALEsAHRVSCEradqekAEMSAEIRRLQSTVKDLQQATSLLV 1061
Cdd:COG3096 1040 QELEELGVQADAEAEERARIRRdELHEELSQNRSRRSQLE-KQLTRCE------AEMDSLQKRLRKAERDYKQEREQVV 1111
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
346-933 |
2.41e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 346 EEGIENSQEILKALDFSLDGNINLTELTLALENELlvtknGIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDKAEK 425
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELI-----KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 426 LKSLMAsevddhhaaierrneyNLRKLDEEYKERIAALKNELRQEREQIlqqvgkqrVELEQEIEKAKTEENYIRDrLAL 505
Cdd:PRK03918 236 LKEEIE----------------ELEKELESLEGSKRKLEEKIRELEERI--------EELKKEIEELEEKVKELKE-LKE 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 506 SLKENNRLENELLENAEKLAEYENLTSKLQRSLENVlAEKFGDLDPSSAEFFLQEERLAQMRNEYE--QQCRLLQDQVDE 583
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI-EERIKELEEKEERLEELKKKLKELEKRLEelEERHELYEEAKA 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 584 LQSELEEYQAQGRVLRLPCQNALSEELDGHGDGIEQDQEPGSGECNPLNMSI-EAELVIEQLKEQHHR-DLCHLRLELED 661
Cdd:PRK03918 370 KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIkELKKAIEELKKAKGKcPVCGRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 662 KVRHYEK-QLDHTRVACEKEQVAMK-QKYEQGMRTLEKQISElQSEIADLQGQAAVLKEAhhkascrhEEEKKQLQMVFD 739
Cdd:PRK03918 450 RKELLEEyTAELKRIEKELKEIEEKeRKLRKELRELEKVLKK-ESELIKLKELAEQLKEL--------EEKLKKYNLEEL 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 740 EEKTQLQEELRlEHEQELKARLQQAEESFRQErEGLAQAAAWTEEKARSLTRDLEQSHQEqLLSLMEKHALEKEELRKEL 819
Cdd:PRK03918 521 EKKAEEYEKLK-EKLIKLKGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKE-LEELGFESVEELEERLKEL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 820 SEYHQR--ELQEGREEMETECNRRVS---QIEAQFQ--ADCEKVTERCEQTLQSLEGRYRQELKDLLDQHLEERSQWEFE 892
Cdd:PRK03918 598 EPFYNEylELKDAEKELEREEKELKKleeELDKAFEelAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAG 677
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1958782428 893 KDELTQECTEAQEQLEEVLQREKATALARSQEQETLEKTHK 933
Cdd:PRK03918 678 LRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1664-1944 |
2.42e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1664 LKEELDRYKVQTSTL--------VSSLEAELSEVKLQTHIVEQENLLLKDELERLKQlhrcpDLSDFQQKMCSILSYNEN 1735
Cdd:COG1196 218 LKEELKELEAELLLLklreleaeLEELEAELEELEAELEELEAELAELEAELEELRL-----ELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1736 LLKEKEVLSEELKSCADKLAEsslLEHRIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQV 1815
Cdd:COG1196 293 LLAELARLEQDIARLEERRRE---LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1816 TRQEKEALKQEVMSLHLQLQNAIDKdwVSETATHLSGLQGQQKRLSwNKLDHLMSEEPELLcQESKRLQTVVQNTQADLT 1895
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRA--AAELAAQLEELEEAEEALL-ERLERLEEELEELE-EALAELEEEEEEEEEALE 445
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1958782428 1896 HSREKIRQLESNLLptKHQKQLNQSCTVKPIEQEKLALKRECEQSRKER 1944
Cdd:COG1196 446 EAAEEEAELEEEEE--ALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1571-1821 |
2.64e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 42.71 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1571 ELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLnqrlaemlcqkedpg 1650
Cdd:pfam05667 311 EAPAATSSPPTKVETEEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEEL--------------- 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1651 tctsekwEQENESLKEEldrYKVQTSTLVSSLEAELSEVKLQTHIVEQENLLLkdELERLKQLHRCPDLSDFQQkmcsil 1730
Cdd:pfam05667 376 -------KEQNEELEKQ---YKVKKKTLDLLPDAEENIAKLQALVDASAQRLV--ELAGQWEKHRVPLIEEYRA------ 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1731 synenllkEKEVLSEELKSCADKLAESSLLEHRIATIKEEREAWEEQSQDLKSQL-ALSQEK-----VQNLEDILKNVNL 1804
Cdd:pfam05667 438 --------LKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKEELYKQLVAEYeRLPKDVsrsayTRRILEIVKNIKK 509
|
250
....*....|....*...
gi 1958782428 1805 QMAQIESDLQVTR-QEKE 1821
Cdd:pfam05667 510 QKEEITKILSDTKsLQKE 527
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1568-1786 |
2.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1568 KLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKE 1647
Cdd:COG4942 35 EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALY 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1648 DPGTCTSEKWEQENESLKEELDRYKVqTSTLVSSLEAELSEVKLQTHIVEQENLLLKDELERLKQLHrcpdlsdfqqkmc 1727
Cdd:COG4942 115 RLGRQPPLALLLSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELEAERAELEALL------------- 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958782428 1728 silsynENLLKEKEVLSEELKSCADKLAEsslLEHRIATIKEEREAWEEQSQDLKSQLA 1786
Cdd:COG4942 181 ------AELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIA 230
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
861-1122 |
3.06e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 861 EQTLQSLEGRYRQELK-DLLDQHLEErsqwefekdeLTQECTEAQEQLEevlqrekatALARSQEQETLEKTHKERLAIL 939
Cdd:PRK11281 66 EQTLALLDKIDRQKEEtEQLKQQLAQ----------APAKLRQAQAELE---------ALKDDNDEETRETLSTLSLRQL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 940 SMEREQLLQDLKDLQNT--------------SERQHSLLSDQmleLKRSQE------------RELREPEHVLCQTgvse 993
Cdd:PRK11281 127 ESRLAQTLDQLQNAQNDlaeynsqlvslqtqPERAQAALYAN---SQRLQQirnllkggkvggKALRPSQRVLLQA---- 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 994 qlgsqQLARLQVEHEQERREMAG--KIAALESAHRvsceradqekAEMSAEIRRLQSTVKDLQ-------------QATS 1058
Cdd:PRK11281 200 -----EQALLNAQNDLQRKSLEGntQLQDLLQKQR----------DYLTARIQRLEHQLQLLQeainskrltlsekTVQE 264
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958782428 1059 LLVLQGGCRATAG----EEAEGNGALS--LLQQGEQLLEENGD------VLISLQKAhERAVKEnakmatEISRLQ 1122
Cdd:PRK11281 265 AQSQDEAARIQANplvaQELEINLQLSqrLLKATEKLNTLTQQnlrvknWLDRLTQS-ERNIKE------QISVLK 333
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
1544-1826 |
3.08e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 41.83 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1544 LQEENSILRNEITTLNEEDSISNLKLEELNGSQ-EELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQqldsenKELS 1622
Cdd:pfam00038 23 LEQQNKLLETKISELRQKKGAEPSRLYSLYEKEiEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYE------DELN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1623 QKNSQnKEELKTLNQRLAEMLCQKEDpgtctsekWEQENESLKEELDRYKVQTSTLVSSLEAELSEvklQTHIVEQENLL 1702
Cdd:pfam00038 97 LRTSA-ENDLVGLRKDLDEATLARVD--------LEAKIESLKEELAFLKKNHEEEVRELQAQVSD---TQVNVEMDAAR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1703 ----------LKDELERLKQLHRCPDLSDFQQKMcsilsynENLLKEKEVLSEELKSCADKLAESSL----LEHRIATIK 1768
Cdd:pfam00038 165 kldltsalaeIRAQYEEIAAKNREEAEEWYQSKL-------EELQQAAARNGDALRSAKEEITELRRtiqsLEIELQSLK 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958782428 1769 EEREAWEEQSQDLKSQLALSQEKVQNledilknvnlQMAQIESDLQVTRQEKEALKQE 1826
Cdd:pfam00038 238 KQKASLERQLAETEERYELQLADYQE----------LISELEAELQETRQEMARQLRE 285
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
468-1055 |
4.14e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 468 RQEREqiLQQVGKQRVELEQEIEKAKTEENYIRDRLALSLKENNRLENELLENAEKLAEYENLTSKL---QRSLENVLAE 544
Cdd:pfam01576 2 RQEEE--MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLaarKQELEEILHE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 545 KFGDLDPssaefflQEERLAQMRNEYEQqcrlLQDQVDELQSELEEYQAQGRVLRLP--CQNALSEELDGHGDGIEQDQE 622
Cdd:pfam01576 80 LESRLEE-------EEERSQQLQNEKKK----MQQHIQDLEEQLDEEEAARQKLQLEkvTTEAKIKKLEEDILLLEDQNS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 623 PGSGECNPLNMSIEAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLdhtrvaceKEQVAMKQKYEQGMRTLEKQISEL 702
Cdd:pfam01576 149 KLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERL--------KKEEKGRQELEKAKRKLEGESTDL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 703 QSEIADLQGQAAVLKEAHHKascrHEEEKKQLQMVFDEE---KTQLQEELRleheqELKARLQQAEESFRQEREGLAQAa 779
Cdd:pfam01576 221 QEQIAELQAQIAELRAQLAK----KEEELQAALARLEEEtaqKNNALKKIR-----ELEAQISELQEDLESERAARNKA- 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 780 awteEKARsltRDLEQshqeqllslmEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVsqieaqfqadcEKVTER 859
Cdd:pfam01576 291 ----EKQR---RDLGE----------ELEALKTELEDTLDTTAAQQELRSKREQEVTELKKAL-----------EEETRS 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 860 CEQTLQSLEGRYRQ---ELKDLLDQHLEERSQWEFEKDELTQECTEAQEQLEEVLQ--------REKATA-----LARSQ 923
Cdd:pfam01576 343 HEAQLQEMRQKHTQaleELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQakqdsehkRKKLEGqlqelQARLS 422
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 924 EQETLEKTHKERLAILSMEREQLLQDLKDLQNTSERQHSLLSDQMLELKRSQERELREPEHVLC-----------QTGVS 992
Cdd:pfam01576 423 ESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNlstrlrqledeRNSLQ 502
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958782428 993 EQLGSQQLARLQVEHE------------QERREMAGKIAALESAHR---VSCERADQEKAEMSAEIRRLQSTVKDLQQ 1055
Cdd:pfam01576 503 EQLEEEEEAKRNVERQlstlqaqlsdmkKKLEEDAGTLEALEEGKKrlqRELEALTQQLEEKAAAYDKLEKTKNRLQQ 580
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1476-1987 |
4.29e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1476 IAELELEKQKLQELTRNLRERVTtlAKQKDAPSQGEEEEELKAVMHDLqitcGEMQRKVELLRYESEKLQEENSILRNEI 1555
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIE--RLEKFIKRTENIEELIKEKEKEL----EEVLREINEISSELPELREELEKLEKEV 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1556 TTLNEEDSisnlKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDsENKELSQKNSQNKEELKTL 1635
Cdd:PRK03918 231 KELEELKE----EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEY 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1636 NQRLAEMlcqkedpgTCTSEKWEQENESLKEELDRYKVQTSTLvSSLEAELSEVKLQTHIVE------QENLLLKDELER 1709
Cdd:PRK03918 306 LDELREI--------EKRLSRLEEEINGIEERIKELEEKEERL-EELKKKLKELEKRLEELEerhelyEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1710 LKQLHRCPDLSDFQQKMcsilsynENLLKEKEVLSEELKSCADKLAEsslLEHRIatiKEEREAWEE-QSQDLKSQLALS 1788
Cdd:PRK03918 377 LKKRLTGLTPEKLEKEL-------EELEKAKEEIEEEISKITARIGE---LKKEI---KELKKAIEElKKAKGKCPVCGR 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1789 QEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSLHLQLQNAIDKDWVSETATHLSGLQGQQKRLSWNKLDHl 1868
Cdd:PRK03918 444 ELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEK- 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1869 MSEEPELLCQESKRLQTVVQNTQADLTHSREKIRQLESnLLPTKHQKQLNQSCTVKPIEQEKLALKRECEQSRKERSPTS 1948
Cdd:PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE-LEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFY 601
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1958782428 1949 RK----VSQMSSLERELETIHLENEGLKKKQVRLDEKLMEARR 1987
Cdd:PRK03918 602 NEylelKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE 644
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
683-943 |
4.44e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 41.98 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 683 AMKQKYEQgMRTLEKQISELQSEIADLQGQAAVLKEAHhkascrheEEKKQLQMVFDEEkTQLQEEL-RLEHEQELKARL 761
Cdd:COG0497 159 EYREAYRA-WRALKKELEELRADEAERARELDLLRFQL--------EELEAAALQPGEE-EELEEERrRLSNAEKLREAL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 762 QQAEESFRQEreglaqaaawteekarsltrdlEQSHQEQLLSLMekHALEK-EELRKELSEYHQReLQEGREEMEtECNR 840
Cdd:COG0497 229 QEALEALSGG----------------------EGGALDLLGQAL--RALERlAEYDPSLAELAER-LESALIELE-EAAS 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 841 RVSQIEAQFQAD---CEKVTERCeQTLQSLEGRYRQELKDLLDQH------LEERSQWEFEKDELTQECTEAQEQLeevl 911
Cdd:COG0497 283 ELRRYLDSLEFDperLEEVEERL-ALLRRLARKYGVTVEELLAYAeelraeLAELENSDERLEELEAELAEAEAEL---- 357
|
250 260 270
....*....|....*....|....*....|....
gi 1958782428 912 qREKATAL--ARSQEQETLEKTHKERLAILSMER 943
Cdd:COG0497 358 -LEAAEKLsaARKKAAKKLEKAVTAELADLGMPN 390
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
739-851 |
4.48e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 41.41 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 739 DEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKarslTRDLEQSHQEQLLSLMEKHALEKEELRKE 818
Cdd:cd16269 181 AEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLEEQQRELEQK----LEDQERSYEEHLRQLKEKMEEERENLLKE 256
|
90 100 110
....*....|....*....|....*....|...
gi 1958782428 819 LSEYHQRELQEGREEMETECNRRVSQIEAQFQA 851
Cdd:cd16269 257 QERALESKLKEQEALLEEGFKEQAELLQEEIRS 289
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1309-2009 |
5.38e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 5.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1309 EVYRLQDEMKKMEEVTGTFLSLENSYDEVKLENEKLSALVLRLQGKMEEVLERAALQGD-SYSLWEGP--SENLEVTSDE 1385
Cdd:COG5022 763 RYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKlQKTIKREKklRETEEVEFSL 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1386 KMLELHQTEEEctpEVMSRHHIIEECRQETRccEQGSTQLLagiKAHeiawfRRKIETHQEKPSVQNRVILEESAALLGL 1465
Cdd:COG5022 843 KAEVLIQKFGR---SLKAKKRFSLLKKETIY--LQSAQRVE---LAE-----RQLQELKIDVKSISSLKLVNLELESEII 909
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1466 QGTHLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEE--ELKAVMHDLQITCGEMQRKVELLRYESEK 1543
Cdd:COG5022 910 ELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKlhEVESKLKETSEEYEDLLKKSTILVREGNK 989
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1544 LQEENSILRNEITTLNEE---DSISNLKLEELNGSQEELWQKIETIEQEKASIQKMvEKLKKQVSDLKLKNQQLDSENKE 1620
Cdd:COG5022 990 ANSELKNFKKELAELSKQygaLQESTKQLKELPVEVAELQSASKIISSESTELSIL-KPLQKLKGLLLLENNQLQARYKA 1068
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1621 LSQKNSQNKEELKTLNQRLAemlcqkedpgtcTSEKWEQENESLKEELDRYKVQTSTLVSSLEAELSEVKLQTHIVE--- 1697
Cdd:COG5022 1069 LKLRRENSLLDDKQLYQLES------------TENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKfls 1136
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1698 QENLLLKDELERLKQLHRCPDLSDFQQKMCSILSYN-ENLLKEKEVLSEELKSCADKLAESSLLEHRIATIKEEREAWEE 1776
Cdd:COG5022 1137 QLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPpFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSG 1216
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1777 QSQDLKSQLALSQEKV-----------QNLEDILKN--------VNLQMAQIESDLQVTRQEKEALKQEVMSLhLQLQNA 1837
Cdd:COG5022 1217 WPRGDKLKKLISEGWVpteystslkgfNNLNKKFDTpasmsnekLLSLLNSIDNLLSSYKLEEEVLPATINSL-LQYINV 1295
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1838 IDKDWVSETATHLSGLQGQQKRLSwnkldhlmSEEPELLCQESKRlqTVVQNTQADLTHSReKIRQLESNLLPtkHQKQL 1917
Cdd:COG5022 1296 GLFNALRTKASSLRWKSATEVNYN--------SEELDDWCREFEI--SDVDEELEELIQAV-KVLQLLKDDLN--KLDEL 1362
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1918 NQSC-TVKPIEQEKlaLKRECEQSRKErSPTSRKVSQMSSLERELETIHLENEGLKKKQVRLDEKLMEARRCFlsSSVPA 1996
Cdd:COG5022 1363 LDACySLNPAEIQN--LKSRYDPADKE-NNLPKEILKKIEALLIKQELQLSLEGKDETEVHLSEIFSEEKSLI--SLDRN 1437
|
730
....*....|...
gi 1958782428 1997 HEYRMPRIGPVSA 2009
Cdd:COG5022 1438 SIYKEEVLSSLSA 1450
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1540-1830 |
5.97e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 5.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1540 ESEKLQEENSILRNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENK 1619
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKS 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1620 ELSQKNSQnKEELKTLNQRLAEMLCQKEDPgtctsekwEQENESLKEELDRYKVQTSTLVSSLEAELSE-VKLQTHIVEQ 1698
Cdd:PRK01156 240 ALNELSSL-EDMKNRYESEIKTAESDLSME--------LEKNNYYKELEERHMKIINDPVYKNRNYINDyFKYKNDIENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1699 ENLL--LKDELERLKQLHRcpDLSDFQQkmcsilSYNENLLKEKEVlsEELKSCADKLAESSL--------LEHRIATIK 1768
Cdd:PRK01156 311 KQILsnIDAEINKYHAIIK--KLSVLQK------DYNDYIKKKSRY--DDLNNQILELEGYEMdynsylksIESLKKKIE 380
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958782428 1769 EEREAWEEQSQDLKSQLALSQEKVQNLEDILKNVNLQMAQIESDLQVTRQEKEALKQEVMSL 1830
Cdd:PRK01156 381 EYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDEL 442
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1218-1710 |
6.07e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1218 DLKSQIIQLQEQLTVLRADCDRASERKRDLLFDISVLKKKLKMLERLPEASSKYKVLYEDAARENACLQEELRLMEMRY- 1296
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAl 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1297 ADSLDSNKELTAEVYRLQDEMKKMEEVTGTFLSLENSYDEVKLENEKLSALVLRLQGKMEEVLERAALQGDSYSLWEGPS 1376
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1377 ENLEVTSDEKMLELHQTEeectpevmSRHHIIEECRqetrccEQGSTQLLAGIKAHEIAWFRRKIETHQEKPSVQNRVIL 1456
Cdd:COG1196 473 ALLEAALAELLEELAEAA--------ARLLLLLEAE------ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1457 EESAALLGlqgthLQHEATIAELELEKQKLQELTRNLRERVTTLAKQKDAPSQGEEEEELKAVMHDLQITCGEMQRKVEL 1536
Cdd:COG1196 539 ALEAALAA-----ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1537 LRYESEKLQEENSIL-------RNEITTLNEEDSISNLKLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKL 1609
Cdd:COG1196 614 RYYVLGDTLLGRTLVaarleaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1610 KNQQLDSENKELSQKNSQNKEELKTLNQRLAEMLCQKEdpgtctsekwEQENESLKEELDRYKVQTSTLVSSLEAELSEV 1689
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE----------AEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
490 500
....*....|....*....|.
gi 1958782428 1690 KLQTHIVEqenllLKDELERL 1710
Cdd:COG1196 764 ELERELER-----LEREIEAL 779
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
636-1361 |
7.69e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 636 EAELVIEQLKEQHHRDLCHLRLELEDKVRHYEKQLDhtrvACEKEQVAMKQKYEQGMRTLEKQISELQSEIADLQGQAAV 715
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKK----ALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 716 LkeahhkascrhEEEKKQLQMVFDEEKTQLQEELRLEHEQELKARLQQAEESFRQEREGLAQAAAWTEEKARSLTRDLEQ 795
Cdd:pfam02463 249 E-----------QEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 796 SHQEQLLSLMEKHALEKEELRKELSEYHQRELQEGREEMETECNRRVSQIEAQFQADCEKVTERCEQTLQSLEGRYRQEL 875
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 876 KDLLDQHLEERSQWEFEKDELTQECTEAQEQL--EEVLQREKATALARSQEQETLEKTHKERLAILSMEREQLLQDLKDL 953
Cdd:pfam02463 398 ELKSEEEKEAQLLLELARQLEDLLKEEKKEELeiLEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKET 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 954 QNTSERQHsllsdQMLELKRSQERELREPEHVLCQTGVSEQLGSQQLARLQVEHEQERREMAGKIAALESAHRVSCERAD 1033
Cdd:pfam02463 478 QLVKLQEQ-----LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1034 QEKAEmsaeirrlqstVKDLQQATSLLVLQGGCRATAGEEAEGNGALSLLQQGEQLLEENGDVLISLQKAHERAVKENAK 1113
Cdd:pfam02463 553 VSATA-----------DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKR 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1114 MATEISRLQQRLKKLEPGSAIsscleERMTEISGSSREHAEPVMKRGTATKHFLSDPGDHEAQglgstgtssvQRQECRT 1193
Cdd:pfam02463 622 AKVVEGILKDTELTKLKESAK-----AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ----------ELQEKAE 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1194 EESEASLECFSELENSEDTRTESWDLKSQIIQLQEQLTVLRADCDRASERKRDLLF----DISVLKKKLKMLERLPEASS 1269
Cdd:pfam02463 687 SELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKqkidEEEEEEEKSRLKKEEKEEEK 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1270 KYKVLYEDAARENACLQEELRLMEMRYADSLDSNKELTAEVYRLQDEMKKMEEVTGTFLSLENSYDEVKLENEKLSALVL 1349
Cdd:pfam02463 767 SELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQ 846
|
730
....*....|..
gi 1958782428 1350 RLQGKMEEVLER 1361
Cdd:pfam02463 847 KLEKLAEEELER 858
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
472-816 |
8.88e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 472 EQILQQVGKQRVELEQEIEKAKTEENYIRDRLAlSLKENNRLENELLENAEKLAEyENLTSKLQRSLENVLAEKfgdldp 551
Cdd:COG3096 835 EAELAALRQRRSELERELAQHRAQEQQLRQQLD-QLKEQLQLLNKLLPQANLLAD-ETLADRLEELREELDAAQ------ 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 552 sSAEFFLQE--ERLAQMrneyEQQCRLLQ---DQVDELQSELEEYQAQGRVLRLPCQnALSEELDGHGDGIEQDQEPGSG 626
Cdd:COG3096 907 -EAQAFIQQhgKALAQL----EPLVAVLQsdpEQFEQLQADYLQAKEQQRRLKQQIF-ALSEVVQRRPHFSYEDAVGLLG 980
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 627 ECNPLNMSIEAELVIEQlkeqhhrdlcHLRLELEDKVRHYEKQLDHTrvacEKEQVAMKQKYEQGMRTLEkqisELQSEI 706
Cdd:COG3096 981 ENSDLNEKLRARLEQAE----------EARREAREQLRQAQAQYSQY----NQVLASLKSSRDAKQQTLQ----ELEQEL 1042
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 707 ADLQGQAAVlkEAHHKASCRHEEEKKQLQmVFDEEKTQLQEEL-RLEHEQE-LKARLQQAEESFRQEREGLAQA-AAWTE 783
Cdd:COG3096 1043 EELGVQADA--EAEERARIRRDELHEELS-QNRSRRSQLEKQLtRCEAEMDsLQKRLRKAERDYKQEREQVVQAkAGWCA 1119
|
330 340 350
....*....|....*....|....*....|....
gi 1958782428 784 EKARSLTRDLEQS-HQEQLLslmekhALEKEELR 816
Cdd:COG3096 1120 VLRLARDNDVERRlHRRELA------YLSADELR 1147
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1576-1835 |
9.34e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 9.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1576 QEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQ--QLDSENKELSQKNSQNKEELKTLNQRLAEMlcqkedpgtct 1653
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEA----------- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1654 sekwEQENESLKEELDRYK-----VQTSTLVSSLEAELSEVKLQthiveqenllLKDELERLKQLHrcPDLsdfqqkmcs 1728
Cdd:COG3206 239 ----EARLAALRAQLGSGPdalpeLLQSPVIQQLRAQLAELEAE----------LAELSARYTPNH--PDV--------- 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1729 ilsynENLLKEKEVLSEELKSCADKLaessllehrIATIKEEREAWEEQSQDLKSQLALSQEKVQNLEDILKnvnlQMAQ 1808
Cdd:COG3206 294 -----IALRAQIAALRAQLQQEAQRI---------LASLEAELEALQAREASLQAQLAQLEARLAELPELEA----ELRR 355
|
250 260
....*....|....*....|....*..
gi 1958782428 1809 IESDLQVTRQEKEALKQEVMSLHLQLQ 1835
Cdd:COG3206 356 LEREVEVARELYESLLQRLEEARLAEA 382
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1542-1758 |
9.85e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1542 EKLQEENSILRNEITTLNEEdsisnlkLEELNGSQEELWQKIETIEQEKASIQKMVEKLKKQVSDLKLKNQQLDSENKEL 1621
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKE-------LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958782428 1622 SQKNSQNKEELKTL--------NQRLAEMLCQKEDPGTC--TSEKWEQENESLKEELDRYKVQTSTLvSSLEAELSEVKL 1691
Cdd:COG4942 96 RAELEAQKEELAELlralyrlgRQPPLALLLSPEDFLDAvrRLQYLKYLAPARREQAEELRADLAEL-AALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958782428 1692 QTHIVEQENLLLKDELERLKQLHRcPDLSDFQQKMCSILSYNENLLKEKEVLSEELKSCADKLAESS 1758
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQ-KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| |
