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Conserved domains on  [gi|2082430845|ref|XP_042986076|]
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NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A-like [Carya illinoinensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUF_B12 super family cl06933
NADH-ubiquinone oxidoreductase B12 subunit family; This family consists of the NADH-ubiquinone ...
 15-66 7.80e-09

NADH-ubiquinone oxidoreductase B12 subunit family; This family consists of the NADH-ubiquinone oxidoreductase B12 subunit proteins. NADH is the central source of electrons in the mitochondrial and bacterial respiration. NADH-ubiquinone oxidoreductase is involved in the transfer of electrons from NADH to the electron transport chain. This oxidation of NADH is coupled to proton transfer across the membrane, generating a proton motive force that is utilized for the synthesis of ATP. The function of this subunit is unclear.


The actual alignment was detected with superfamily member pfam08122:

Pssm-ID: 462364  Cd Length: 55  Bit Score: 46.39  E-value: 7.80e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 2082430845 15 RRDEWRKHPMLT--NQLRHATPGLGIALVAFGIYLIGEQVYdrlhAPSSSHHNH 66
Cdd:pfam08122  6 RNEAWRYKGGFSrrNRFKNAFPGFGIGVVAFVAYVGYEYFF----GIKDKHHGH 55
 
Name Accession Description Interval E-value
NDUF_B12 pfam08122
NADH-ubiquinone oxidoreductase B12 subunit family; This family consists of the NADH-ubiquinone ...
 15-66 7.80e-09

NADH-ubiquinone oxidoreductase B12 subunit family; This family consists of the NADH-ubiquinone oxidoreductase B12 subunit proteins. NADH is the central source of electrons in the mitochondrial and bacterial respiration. NADH-ubiquinone oxidoreductase is involved in the transfer of electrons from NADH to the electron transport chain. This oxidation of NADH is coupled to proton transfer across the membrane, generating a proton motive force that is utilized for the synthesis of ATP. The function of this subunit is unclear.


Pssm-ID: 462364  Cd Length: 55  Bit Score: 46.39  E-value: 7.80e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 2082430845 15 RRDEWRKHPMLT--NQLRHATPGLGIALVAFGIYLIGEQVYdrlhAPSSSHHNH 66
Cdd:pfam08122  6 RNEAWRYKGGFSrrNRFKNAFPGFGIGVVAFVAYVGYEYFF----GIKDKHHGH 55
 
Name Accession Description Interval E-value
NDUF_B12 pfam08122
NADH-ubiquinone oxidoreductase B12 subunit family; This family consists of the NADH-ubiquinone ...
 15-66 7.80e-09

NADH-ubiquinone oxidoreductase B12 subunit family; This family consists of the NADH-ubiquinone oxidoreductase B12 subunit proteins. NADH is the central source of electrons in the mitochondrial and bacterial respiration. NADH-ubiquinone oxidoreductase is involved in the transfer of electrons from NADH to the electron transport chain. This oxidation of NADH is coupled to proton transfer across the membrane, generating a proton motive force that is utilized for the synthesis of ATP. The function of this subunit is unclear.


Pssm-ID: 462364  Cd Length: 55  Bit Score: 46.39  E-value: 7.80e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 2082430845 15 RRDEWRKHPMLT--NQLRHATPGLGIALVAFGIYLIGEQVYdrlhAPSSSHHNH 66
Cdd:pfam08122  6 RNEAWRYKGGFSrrNRFKNAFPGFGIGVVAFVAYVGYEYFF----GIKDKHHGH 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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