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Conserved domains on  [gi|578809697|ref|XP_373030|]
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uncharacterized protein C4orf54 isoform X1 [Homo sapiens]

Protein Classification

DUF4585 domain-containing protein( domain architecture ID 10633617)

DUF4585 domain-containing protein similar to Homo sapiens protein C4orf54 (also called familial obliterative portal venopathy or FOPV)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4585 pfam15232
Domain of unknown function (DUF4585); The function of this protein domain family is yet to be ...
1643-1706 4.45e-24

Domain of unknown function (DUF4585); The function of this protein domain family is yet to be characterized. It is putatively thought to lie in the C-terminal domain of the DNA nucleotide repair protein, Xeroderma pigmentosa complementation group A (XPA). The function of XPA is to bind to DNA and repair any mismatched base pairs. This domain family is often found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved DPE sequence motif. In humans, this protein is encoded for in the chromosomal position, Chromosome 5 open reading frame 65. Mutations in the gene lead to myelodysplastic syndromes, where there is inefficient stem cell production in the bone marrow. This suggests that the protein may have a role in forming blood cells.


:

Pssm-ID: 464574 [Multi-domain]  Cd Length: 73  Bit Score: 97.06  E-value: 4.45e-24
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578809697  1643 RKMLLDVTTGQYYLVDTPVQPMTRRLFDPETGQYVDVPM---TSQQQAVAPMSISVPPLALSPGAYG 1706
Cdd:pfam15232    7 RKVLLDPESGQYYVVDAPLQPQLKTLFDPETGQYVEVSIpssESNVSPPTPPELLYSPLALYPGAYP 73
 
Name Accession Description Interval E-value
DUF4585 pfam15232
Domain of unknown function (DUF4585); The function of this protein domain family is yet to be ...
1643-1706 4.45e-24

Domain of unknown function (DUF4585); The function of this protein domain family is yet to be characterized. It is putatively thought to lie in the C-terminal domain of the DNA nucleotide repair protein, Xeroderma pigmentosa complementation group A (XPA). The function of XPA is to bind to DNA and repair any mismatched base pairs. This domain family is often found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved DPE sequence motif. In humans, this protein is encoded for in the chromosomal position, Chromosome 5 open reading frame 65. Mutations in the gene lead to myelodysplastic syndromes, where there is inefficient stem cell production in the bone marrow. This suggests that the protein may have a role in forming blood cells.


Pssm-ID: 464574 [Multi-domain]  Cd Length: 73  Bit Score: 97.06  E-value: 4.45e-24
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578809697  1643 RKMLLDVTTGQYYLVDTPVQPMTRRLFDPETGQYVDVPM---TSQQQAVAPMSISVPPLALSPGAYG 1706
Cdd:pfam15232    7 RKVLLDPESGQYYVVDAPLQPQLKTLFDPETGQYVEVSIpssESNVSPPTPPELLYSPLALYPGAYP 73
 
Name Accession Description Interval E-value
DUF4585 pfam15232
Domain of unknown function (DUF4585); The function of this protein domain family is yet to be ...
1643-1706 4.45e-24

Domain of unknown function (DUF4585); The function of this protein domain family is yet to be characterized. It is putatively thought to lie in the C-terminal domain of the DNA nucleotide repair protein, Xeroderma pigmentosa complementation group A (XPA). The function of XPA is to bind to DNA and repair any mismatched base pairs. This domain family is often found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved DPE sequence motif. In humans, this protein is encoded for in the chromosomal position, Chromosome 5 open reading frame 65. Mutations in the gene lead to myelodysplastic syndromes, where there is inefficient stem cell production in the bone marrow. This suggests that the protein may have a role in forming blood cells.


Pssm-ID: 464574 [Multi-domain]  Cd Length: 73  Bit Score: 97.06  E-value: 4.45e-24
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578809697  1643 RKMLLDVTTGQYYLVDTPVQPMTRRLFDPETGQYVDVPM---TSQQQAVAPMSISVPPLALSPGAYG 1706
Cdd:pfam15232    7 RKVLLDPESGQYYVVDAPLQPQLKTLFDPETGQYVEVSIpssESNVSPPTPPELLYSPLALYPGAYP 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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