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Conserved domains on  [gi|564382121|ref|XP_573525|]
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consortin isoform X1 [Rattus norvegicus]

Protein Classification

Consortin_C domain-containing protein( domain architecture ID 10633794)

Consortin_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Consortin_C pfam15281
Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting ...
 673-784 1.11e-67

Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting connexins to the plasma membrane.


:

Pssm-ID: 464611  Cd Length: 113  Bit Score: 218.76  E-value: 1.11e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382121  673 EAIPAEGLVSILKKRNDAVGG-HPAQMQQKPSKRRVRFQEIDDNLDQDEVGGGSCVLLILLCIATVFLSVGGTALYCTLG 751
Cdd:pfam15281   1 EISPAEGLVSILKKRRSSEDGsTLTQSQKQQSKRRVRFQEPDDGLDQDEVGGDSCLLLLLLCLVTVVISVGGTALYCTLG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 564382121  752 DMESPVCTDFADNVDFYYTKLLQGVAGLKHWVY 784
Cdd:pfam15281  81 DTESSVCTDFAQNVDFYYTQIQRGIAELKHWLT 113
 
Name Accession Description Interval E-value
Consortin_C pfam15281
Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting ...
 673-784 1.11e-67

Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting connexins to the plasma membrane.


Pssm-ID: 464611  Cd Length: 113  Bit Score: 218.76  E-value: 1.11e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382121  673 EAIPAEGLVSILKKRNDAVGG-HPAQMQQKPSKRRVRFQEIDDNLDQDEVGGGSCVLLILLCIATVFLSVGGTALYCTLG 751
Cdd:pfam15281   1 EISPAEGLVSILKKRRSSEDGsTLTQSQKQQSKRRVRFQEPDDGLDQDEVGGDSCLLLLLLCLVTVVISVGGTALYCTLG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 564382121  752 DMESPVCTDFADNVDFYYTKLLQGVAGLKHWVY 784
Cdd:pfam15281  81 DTESSVCTDFAQNVDFYYTQIQRGIAELKHWLT 113
 
Name Accession Description Interval E-value
Consortin_C pfam15281
Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting ...
 673-784 1.11e-67

Consortin C-terminus; Consortin is a trans-Golgi network cargo receptor involved in targeting connexins to the plasma membrane.


Pssm-ID: 464611  Cd Length: 113  Bit Score: 218.76  E-value: 1.11e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382121  673 EAIPAEGLVSILKKRNDAVGG-HPAQMQQKPSKRRVRFQEIDDNLDQDEVGGGSCVLLILLCIATVFLSVGGTALYCTLG 751
Cdd:pfam15281   1 EISPAEGLVSILKKRRSSEDGsTLTQSQKQQSKRRVRFQEPDDGLDQDEVGGDSCLLLLLLCLVTVVISVGGTALYCTLG 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 564382121  752 DMESPVCTDFADNVDFYYTKLLQGVAGLKHWVY 784
Cdd:pfam15281  81 DTESSVCTDFAQNVDFYYTQIQRGIAELKHWLT 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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