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Conserved domains on  [gi|189095558|ref|YP_001936264|]
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ATP synthase F0 subunit 6 (mitochondrion) [Aphrocallistes vastus]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009612)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
1-242 6.34e-92

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177228  Cd Length: 244  Bit Score: 270.34  E-value: 6.34e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   1 MNYSYFNQFNISKLFYI--KLRETILSFRNLSLILILIIIIITIIQHRNRILIRRNTIINKILYTIAYTLTKEHLNIKHK 78
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIqaFLGDWLVTFTNSSMMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  79 TFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIET 158
Cdd:MTH00175  81 KYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIET 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 159 ASYLTRAISLGVRLAANISAGHLLLTILSRFSFNILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYLSDR 238
Cdd:MTH00175 161 LSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGDT 240

                 ....
gi 189095558 239 IKIH 242
Cdd:MTH00175 241 IALH 244
 
Name Accession Description Interval E-value
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
1-242 6.34e-92

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 270.34  E-value: 6.34e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   1 MNYSYFNQFNISKLFYI--KLRETILSFRNLSLILILIIIIITIIQHRNRILIRRNTIINKILYTIAYTLTKEHLNIKHK 78
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIqaFLGDWLVTFTNSSMMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  79 TFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIET 158
Cdd:MTH00175  81 KYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIET 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 159 ASYLTRAISLGVRLAANISAGHLLLTILSRFSFNILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYLSDR 238
Cdd:MTH00175 161 LSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGDT 240

                 ....
gi 189095558 239 IKIH 242
Cdd:MTH00175 241 IALH 244
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
53-237 4.85e-41

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 140.03  E-value: 4.85e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   53 RNTIINKILYTIAYTLTKEHLNIKHKTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNF 132
Cdd:TIGR01131  43 RWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKH 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  133 KRKFIRILTPQGAPLILAPFLVLIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFNillSELPALSFIPLTILTFI 212
Cdd:TIGR01131 123 PKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGLLFS---LMSSAIFALLLLILVAL 199
                         170       180
                  ....*....|....*....|....*
gi 189095558  213 AILEIAVALIQAYVFTLLSTIYLSD 237
Cdd:TIGR01131 200 IILEIFVAFIQAYVFTLLTCLYLND 224
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
78-236 1.11e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 131.75  E-value: 1.11e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  78 KTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIE 157
Cdd:cd00310    2 KKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIE 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189095558 158 TASYLTRAISLGVRLAANISAGHLLLTILSRFSFNILLSelpaLSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYLS 236
Cdd:cd00310   82 LISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS----VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
76-236 4.27e-30

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 111.43  E-value: 4.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   76 KHKTFLPFIFNLLIFLTRINLIGLL---PYVLTTTAHIIITFSLSLTILIRRTIK--RIQNFKRKFIRILTPQgAPLILA 150
Cdd:pfam00119  53 KGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYgiKKHGLGGYFKKLFVPP-VPLPLV 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  151 PFLVLIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFnILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLL 230
Cdd:pfam00119 132 PLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIF-ALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTML 210

                  ....*.
gi 189095558  231 STIYLS 236
Cdd:pfam00119 211 TAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
76-237 2.60e-25

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 98.61  E-value: 2.60e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  76 KHKTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIrrtIKRIQNFKRK----FIRILTPQGAPlILAP 151
Cdd:COG0356   53 KGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFV---LVHYYGIKKKglggYLKHLFFPPFP-WLAP 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 152 FLVLIETASYLTRAISLGVRLAANISAGHLLLTILsrfsfnILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLS 231
Cdd:COG0356  129 LMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL------AGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLT 202

                 ....*.
gi 189095558 232 TIYLSD 237
Cdd:COG0356  203 AVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
1-242 6.34e-92

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 270.34  E-value: 6.34e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   1 MNYSYFNQFNISKLFYI--KLRETILSFRNLSLILILIIIIITIIQHRNRILIRRNTIINKILYTIAYTLTKEHLNIKHK 78
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIqaFLGDWLVTFTNSSMMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQ 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  79 TFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIET 158
Cdd:MTH00175  81 KYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIET 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 159 ASYLTRAISLGVRLAANISAGHLLLTILSRFSFNILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYLSDR 238
Cdd:MTH00175 161 LSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGDT 240

                 ....
gi 189095558 239 IKIH 242
Cdd:MTH00175 241 IALH 244
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
1-242 1.53e-57

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 182.55  E-value: 1.53e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   1 MNYSYFNQFNISKLFyiklretilSFRNLSLILILIIIIITIIQHRNRILIRRNTIINKILYTIAYTLTKEHLNIKHKTF 80
Cdd:MTH00172   1 MSSSYFDQFNIVWLI---------GLTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKY 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  81 LPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIETAS 160
Cdd:MTH00172  72 FPFIISLFFFIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVS 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 161 YLTRAISLGVRLAANISAGHLLLTILSRFSFNILLSELPaLSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYLSDRIK 240
Cdd:MTH00172 152 YISRAISLGVRLAANLSAGHLLFAILAGFGFNMLCASGF-LSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIV 230

                 ..
gi 189095558 241 IH 242
Cdd:MTH00172 231 LH 232
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
53-237 4.85e-41

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 140.03  E-value: 4.85e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   53 RNTIINKILYTIAYTLTKEHLNIKHKTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNF 132
Cdd:TIGR01131  43 RWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKH 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  133 KRKFIRILTPQGAPLILAPFLVLIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFNillSELPALSFIPLTILTFI 212
Cdd:TIGR01131 123 PKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGLLFS---LMSSAIFALLLLILVAL 199
                         170       180
                  ....*....|....*....|....*
gi 189095558  213 AILEIAVALIQAYVFTLLSTIYLSD 237
Cdd:TIGR01131 200 IILEIFVAFIQAYVFTLLTCLYLND 224
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
59-242 3.62e-39

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 136.22  E-value: 3.62e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  59 KILYTIAYTLTKEHLNIKHKTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIR 138
Cdd:MTH00174  69 ELIYSHFYTVLKDNLGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFS 148
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 139 ILTPQGAPLILAPFLVLIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFNILLSELPALSFIPLTILTFIAILEIA 218
Cdd:MTH00174 149 ILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIGSFVPFAILIFVTILEMA 228
                        170       180
                 ....*....|....*....|....
gi 189095558 219 VALIQAYVFTLLSTIYLSDRIKIH 242
Cdd:MTH00174 229 VAIIQAYVFTLLTIVYLRDTVELH 252
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
78-236 1.11e-38

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 131.75  E-value: 1.11e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  78 KTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIE 157
Cdd:cd00310    2 KKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIE 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189095558 158 TASYLTRAISLGVRLAANISAGHLLLTILSRFSFNILLSelpaLSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYLS 236
Cdd:cd00310   82 LISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS----VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
52-237 7.45e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 124.12  E-value: 7.45e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  52 RRNTIINKILYTIAYTLtKEHLNIKHKTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQN 131
Cdd:MTH00157  41 RYNILWNKILKTLHKEF-KTLLGPKNKGSTLIFISLFSFILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWIN 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 132 FKRKFIRILTPQGAPLILAPFLVLIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFNILLSELPaLSFIPLTILTf 211
Cdd:MTH00157 120 NTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGHLLLTLLGNTGPSLSSMILS-ILILIQILLL- 197
                        170       180
                 ....*....|....*....|....*.
gi 189095558 212 iaILEIAVALIQAYVFTLLSTIYLSD 237
Cdd:MTH00157 198 --ILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
1-235 1.18e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 118.39  E-value: 1.18e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   1 MNYSYFNQFNISKLFYIKLreTILSfrnlsliliLIIIIITIIQHRNRILIRR-NTIINKILYTIAYTLTKEhLNIKHKT 79
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPL--ILLA---------MLIPALLIPSPKNRLLTNRlTTLQLWLIKLITKQLMLP-LNKKGHK 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  80 FLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIETA 159
Cdd:MTH00120  69 WALILTSLMLLLLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETI 148
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 189095558 160 SYLTRAISLGVRLAANISAGHLLLTILSRFSFNiLLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYL 235
Cdd:MTH00120 149 SLLIRPLALGVRLTANLTAGHLLIQLISTATLN-LLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYL 223
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
1-235 8.41e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 116.20  E-value: 8.41e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   1 MNYSYFNQFNISKLFYIKLRETILSFrnlsliLILIIIIITIIQHRNRILIRRNTIINKILYTIAytltkEHLNIKHKTF 80
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLL------PWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLM-----QPINKKGHKW 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  81 LPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIETAS 160
Cdd:MTH00179  70 AVLFLSLMLFLLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETIS 149
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189095558 161 YLTRAISLGVRLAANISAGHLLLTILSRFSFNiLLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYL 235
Cdd:MTH00179 150 LLIRPLALGVRLTANITAGHLLMHLISSAVFV-LMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYL 223
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
83-237 9.41e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 116.12  E-value: 9.41e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  83 FIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIETASYL 162
Cdd:MTH00173  74 LLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSIL 153
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189095558 163 TRAISLGVRLAANISAGHLLLTILSRFSFNILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYLSD 237
Cdd:MTH00173 154 IRPLTLTVRLLANISAGHIVLTLIGNYLSSSLFSSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_A pfam00119
ATP synthase A chain;
76-236 4.27e-30

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 111.43  E-value: 4.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   76 KHKTFLPFIFNLLIFLTRINLIGLL---PYVLTTTAHIIITFSLSLTILIRRTIK--RIQNFKRKFIRILTPQgAPLILA 150
Cdd:pfam00119  53 KGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTVTADINVTLALALIVFLLVHYYgiKKHGLGGYFKKLFVPP-VPLPLV 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  151 PFLVLIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFnILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLL 230
Cdd:pfam00119 132 PLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIF-ALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTML 210

                  ....*.
gi 189095558  231 STIYLS 236
Cdd:pfam00119 211 TAVYIS 216
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
80-237 2.66e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 109.74  E-value: 2.66e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  80 FLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIETA 159
Cdd:MTH00176  71 SASIIISLFILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELV 150
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 189095558 160 SYLTRAISLGVRLAANISAGHLLLTILSRfSFNILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYLSD 237
Cdd:MTH00176 151 SLLIRPLTLAVRLAANLSAGHLLLGLLGA-AMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDE 227
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
78-237 1.64e-27

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 105.20  E-value: 1.64e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  78 KTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIE 157
Cdd:MTH00005  71 KGFSSLISALFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIE 150
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 158 TASYLTRAISLGVRLAANISAGHLLLTILSRFSFNILLSELPALSFIPLTILTFIaILEIAVALIQAYVFTLLSTIYLSD 237
Cdd:MTH00005 151 TISILVRPITLSFRLAANMSAGHIVLSLIGIYAASALFSSISSTILLILTQMGYI-LFEVGICLIQAYIFCLLLSLYSDD 229
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
1-239 2.65e-27

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 104.28  E-value: 2.65e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558   1 MNYSYFNQFNISKLFYIKLrETILSFRNLSLILILIIiiitiiqhrNRILIRRNTIINKILYTIAYTLTKEHLNIKHKTF 80
Cdd:MTH00035   3 INNSIFGQFSPDTILFIPL-TLLSSVIALSWLFFINP---------TNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPW 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  81 LPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIETAS 160
Cdd:MTH00035  73 AGLLTTVFILILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLS 152
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189095558 161 YLTRAISLGVRLAANISAGHLLLTILSRFSFniLLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYLSDRI 239
Cdd:MTH00035 153 LFAQPIALGLRLAANLTAGHLLIFLLSTAIW--ELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
87-235 7.01e-27

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 103.41  E-value: 7.01e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  87 LLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIETASYLTRAI 166
Cdd:MTH00132  76 LMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPL 155
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189095558 167 SLGVRLAANISAGHLLLTILSRFSFnILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYL 235
Cdd:MTH00132 156 ALGVRLTANLTAGHLLIQLIATAAF-VLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYL 223
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
87-235 9.76e-26

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 100.43  E-value: 9.76e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  87 LLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIETASYLTRAI 166
Cdd:MTH00073  76 LMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPL 155
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189095558 167 SLGVRLAANISAGHLLLTILSRFSFnILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTIYL 235
Cdd:MTH00073 156 ALGVRLTANLTAGHLLIQLISTATL-VLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYL 223
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
76-237 2.60e-25

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 98.61  E-value: 2.60e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  76 KHKTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIrrtIKRIQNFKRK----FIRILTPQGAPlILAP 151
Cdd:COG0356   53 KGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFV---LVHYYGIKKKglggYLKHLFFPPFP-WLAP 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 152 FLVLIETASYLTRAISLGVRLAANISAGHLLLTILsrfsfnILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLS 231
Cdd:COG0356  129 LMLPIEIISELARPLSLSLRLFGNMFAGHIILLLL------AGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLT 202

                 ....*.
gi 189095558 232 TIYLSD 237
Cdd:COG0356  203 AVYISL 208
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
74-237 2.67e-25

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 99.26  E-value: 2.67e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  74 NIKHKTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFL 153
Cdd:MTH00101  62 NTKGQTWSLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPML 141
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 154 VLIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFnILLSELPALSFIPLTILTFIAILEIAVALIQAYVFTLLSTI 233
Cdd:MTH00101 142 VIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATL-ALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSL 220

                 ....
gi 189095558 234 YLSD 237
Cdd:MTH00101 221 YLHD 224
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
60-242 4.23e-22

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 90.62  E-value: 4.23e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  60 ILYTIAYTLTKEHLNIKHKTFLPFIFNLLIFLTRINLIGLLPYVL-TTTAHIIITFSLSLTILIRRTIKRIQNFK-RKFI 137
Cdd:PRK05815  52 MIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNLLGLIPYLLfPPTADINVTLALALIVFVLVIYYGIKKKGlGGYL 131
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 138 RILTPQGAPLILApflvlIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFNILLselpaLSFIPLTILTFIAILEI 217
Cdd:PRK05815 132 KEFYLQPHPLLLP-----IEIISEFSRPISLSLRLFGNMLAGELILALIALLGGAGLL-----LALAPLILPVAWTIFEI 201
                        170       180
                 ....*....|....*....|....*
gi 189095558 218 AVALIQAYVFTLLSTIYLSDRIKIH 242
Cdd:PRK05815 202 FVGTLQAYIFMMLTIVYISMAVEEE 226
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
74-235 1.52e-15

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 74.39  E-value: 1.52e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  74 NIKH--KTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSL-TILIRRTIKRIQNFKRKFIRILTpQGAPLILA 150
Cdd:PRK13419 162 NIGHgyEKFLPYLLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVfTFFITQYAAIKAHGIKGYLAHLT-GGTHWSLW 240
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 151 PFLVLIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFnILLSELPALSF-IPLTIltFIAILEIAVALIQAYVFTL 229
Cdd:PRK13419 241 IIMIPIEFIGLFTKPFALTVRLFANMTAGHIVILSLIFISF-ILKSYIVAVAVsVPFAI--FIYLLELFVAFLQAYIFTM 317

                 ....*.
gi 189095558 230 LSTIYL 235
Cdd:PRK13419 318 LSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
104-235 1.38e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 54.51  E-value: 1.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 104 LTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLVLIE-TASYLTRAISLGVRLAANISAGHLL 182
Cdd:PRK13417 216 ITVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVI 295
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 189095558 183 LTILSRFSFnillsELPALSFIPLTILT--FIAILEIAVALIQAYVFTLLSTIYL 235
Cdd:PRK13417 296 ILALMGFIF-----QFQSWGIVPVSVIGsgLIYVLEIFVAFLQAYIFVLLTSLFV 345
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
55-242 1.14e-06

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 47.81  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  55 TIINKILYTIaYTLTKEHLNIKHKTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTIL--IRRTIKRIQNF 132
Cdd:PRK13420  50 VALEGVVSTI-EDAIKEVLPRHARLVLPFVGTLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFfsVHWFGIRAEGL 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558 133 KRKFIRILTPqgaplilAPFLVLIETASYLTRAISLGVRLAANISAGHLLltilsrfsfnILLSELPALSFIPLTILtfi 212
Cdd:PRK13420 129 REYLKHYLSP-------SPFLLPFHLISEITRTLALAVRLFGNIMSLELA----------ALLVLLVAGFLVPVPIL--- 188
                        170       180       190
                 ....*....|....*....|....*....|
gi 189095558 213 aILEIAVALIQAYVFTLLSTIYLSDRIKIH 242
Cdd:PRK13420 189 -MLHIIEALVQAYIFGMLALIYIAGGIQAH 217
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
83-236 2.52e-06

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 46.51  E-value: 2.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  83 FIFNLLIFLTRINLIGLLPYVLTTTAhiIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPF-LVLIETASY 161
Cdd:MTH00087  54 ISFFTFIVLLLFCFGGLFPYSFSPCG--MVEFTFLYALVAWLSTFLSFLSKSEKFSVYLSKGSDSFLKTFsMLFVEIVSE 131
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189095558 162 LTRAISLGVRLAANISAGHLLLTILSRFSFNILLselpalsfipltILTFIAILEIAVALIQAYVFTLLSTIYLS 236
Cdd:MTH00087 132 LSRPLALTLRLTVNLMVGHLISSLLNFLGEKYVW------------LSILAIMMECFVAFIQSYIFSRLIYLYLN 194
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
79-235 4.45e-05

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 43.15  E-value: 4.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  79 TFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQnfKRKFIRILTPQGAPLILAPFLVLIET 158
Cdd:PRK13421  76 PYRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGVR--ARGVRGYLATFAEPTWVMIPLNLVEQ 153
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 189095558 159 asyLTRAISLGVRLAANISAGhllltilsRFSFNILLSELPALSFIPLTiltfiaILEIAVALIQAYVFTLLSTIYL 235
Cdd:PRK13421 154 ---LTRTFSLIVRLFGNVMSG--------VFVIGIVLSLAGLLVPIPLM------ALDLLTGAVQAYIFAVLAMVFI 213
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
75-228 4.08e-04

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 39.87  E-value: 4.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189095558  75 IKHKTFLPFIFNLLIFLTRINLIGLLPYVLTTTAHIIITFSLSLTILIRRTIKRIQNFKRKFIRILTPQGAPLILAPFLV 154
Cdd:MTH00050  17 ILGGSVSYYYSVVLFIVLFLFLLYRLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVC 96
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 189095558 155 LIETASYLTRAISLGVRLAANISAGHLLLTILSRFSFnillselpaLSFIPLTILTFIAILEIAVALIQAYVFT 228
Cdd:MTH00050  97 IAETISYIIRPVVLILRPFINISLGCFGGVALGNLCF---------ISYWWFLVLFFLFFYEVFVALVHWFIVS 161
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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