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Conserved domains on  [gi|197935808|ref|YP_002213577|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Procypris rabaudi]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009582)

NADH dehydrogenase subunit 6 (mitochondrion) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 1.94e-78

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 177196  Cd Length: 173  Bit Score: 230.80  E-value: 1.94e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808   1 MTYFMFLLLVALVVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808  81 AWGSRSVLGYVLVYLLGVGLVAGLFWGGWYEGSWVVVDGLKEFSILRGDISGVAVMYSSGGIMLVICAWVLLLTLLVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 197935808 161 LTRGLSRGALRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 1.94e-78

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 230.80  E-value: 1.94e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808   1 MTYFMFLLLVALVVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808  81 AWGSRSVLGYVLVYLLGVGLVAGLFWGGWYEGSWVVVDGLKEFSILRGDISGVAVMYSSGGIMLVICAWVLLLTLLVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 197935808 161 LTRGLSRGALRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
21-118 1.01e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 51.35  E-value: 1.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808   21 SNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAAL-AAEPFPEAWGSRSVLGYVLVYLLGVG 99
Cdd:pfam00499   5 TSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLA 84

                          90
                  ....*....|....*....
gi 197935808  100 LVAGLFWGGWYEGSWVVVD 118
Cdd:pfam00499  85 LLLLVLLSASLTPAAAAAA 103
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 1.94e-78

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 230.80  E-value: 1.94e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808   1 MTYFMFLLLVALVVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808  81 AWGSRSVLGYVLVYLLGVGLVAGLFWGGWYEGSWVVVDGLKEFSILRGDISGVAVMYSSGGIMLVICAWVLLLTLLVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 197935808 161 LTRGLSRGALRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-173 4.67e-49

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 156.16  E-value: 4.67e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808   1 MTYFMFLLLVALVVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808  81 AWGSRSVLGYVLVYLLGVgLVAGLFWGGWYEGSWVVVDGLKEFSILRGDISGVAVMYSSGGIMLVICAWVLLLTLLVVLE 160
Cdd:MTH00065  81 AWGSWSVLVYVLFYLLLL-IVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLE 159

                        170
                 ....*....|...
gi 197935808 161 LTRGLSRGALRAV 173
Cdd:MTH00065 160 VTRGLSRGSLRAV 172
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-173 3.29e-38

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 128.71  E-value: 3.29e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808   1 MTYFMFLLLVALVVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808  81 AWGSRSVLGYVLVYLLGVGLVAGLFWGGW-YEGSWVVVDGLKEFSILRGDISGVAVMYSSGGIMLVICAWVLLLTLLVVL 159
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLWgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 197935808 160 ELTRGLSRGALRAV 173
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-173 1.10e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 101.60  E-value: 1.10e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808   1 MTYFMFLLLVALVVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808  81 AWGSRSVLGYVLVYLLGVGLVAGLFWGGWYEGSWVVVDGLKEFSilrgdISGVAVMYSSGGIMLVICAWVLLLTLLVVLE 160
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLD-----LSGVSDLYSRGFFLLLLGGVVLFLVLFVVLE 155

                        170
                 ....*....|...
gi 197935808 161 LTRGLSRGALRAV 173
Cdd:MTH00214 156 LVRGLSRGALRVV 168
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-149 7.07e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 99.49  E-value: 7.07e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808   1 MTYFMFLLLVALVVGLVAVASNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197935808  81 AWGSRSVL--GYVLVYLLGVGLVAGLFWGGWYE--------GSWVVVDGlKEFSILRGDISGVAVMYSSGGIMLVICAW 149
Cdd:MTH00109  82 TWVSNKVVlgALLLGLLMELLLVLYVLKDDEVEvvfnfnglGDWVIYDT-GGSGFFSEDAMGVAALYSYGTWLVVVTGW 159
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 25-172 7.00e-14

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 65.31  E-value: 7.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808  25 PYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGSRSVLGYVLVYLLGVgLVAGL 104
Cdd:MTH00045  23 PYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSNLGEVLVLSLLLSLWV-FISFD 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197935808 105 FWGGWYEGSWVVVDGLkefsilrgDISGVAVMYSSGGIMLVICAWVLLLTLLVVLELTRGLSRGALRA 172
Cdd:MTH00045 102 NFLELSNNNWSLVSLS--------DLVGSSELYNSGGLYLLLGGFILLVALVVALVISFGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
21-118 1.01e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 51.35  E-value: 1.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808   21 SNPTPYFAALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAAL-AAEPFPEAWGSRSVLGYVLVYLLGVG 99
Cdd:pfam00499   5 TSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGLLLLA 84

                          90
                  ....*....|....*....
gi 197935808  100 LVAGLFWGGWYEGSWVVVD 118
Cdd:pfam00499  85 LLLLVLLSASLTPAAAAAA 103
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 29-144 3.12e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 36.40  E-value: 3.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197935808  29 ALGLVVAAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAaePFPEAWGSRSVLGYVLVYLLGVGLVagLFWGG 108
Cdd:MTH00152  27 GLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLS--PNPLFGSNFKFVFFSLTLFGFLGLF--FFFLY 102

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 197935808 109 WYEGSWVVVDGLKEFSILRGDISGVAVMYSSGGIML 144
Cdd:MTH00152 103 LYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFV 138
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 49-74 8.37e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 35.17  E-value: 8.37e-03
                         10        20
                 ....*....|....*....|....*.
gi 197935808  49 SFLSLVLFLIYLGGMLVVFAYSAALA 74
Cdd:MTH00166  46 FWFSYILFLIFLGGMLVLFIYITSLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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