alkaline exonuclease [Lymantria xylina nucleopolyhedrovirus]
List of domain hits
Name | Accession | Description | Interval | E-value | |||||
YqaJ super family | cl09232 | YqaJ-like viral recombinase domain; This protein family is found in many different bacterial ... |
39-261 | 2.83e-14 | |||||
YqaJ-like viral recombinase domain; This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit. The actual alignment was detected with superfamily member pfam01771: Pssm-ID: 447697 Cd Length: 460 Bit Score: 74.33 E-value: 2.83e-14
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Name | Accession | Description | Interval | E-value | |||||
Viral_alk_exo | pfam01771 | Viral alkaline exonuclease; This family includes various alkaline exonucleases from members of ... |
39-261 | 2.83e-14 | |||||
Viral alkaline exonuclease; This family includes various alkaline exonucleases from members of the Herpesviridae and Baculoviridae. Alkaline exonuclease appears to have an important role in the replication of herpes simplex virus. Pssm-ID: 396366 Cd Length: 460 Bit Score: 74.33 E-value: 2.83e-14
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PDDEXK_lambda_exonuclease-like | cd22343 | Uncharacterized nucleases similar to lambda phage exonuclease; This model characterizes a ... |
48-238 | 2.87e-10 | |||||
Uncharacterized nucleases similar to lambda phage exonuclease; This model characterizes a diverse set of nucleases such as alkaline exonuclease from Laribacter hongkongensis, lambda phage exonuclease, or a Cas4-like protein from the Mimivirus virophage resistance element system. They belong to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. Pssm-ID: 411747 [Multi-domain] Cd Length: 182 Bit Score: 58.89 E-value: 2.87e-10
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Name | Accession | Description | Interval | E-value | |||||
Viral_alk_exo | pfam01771 | Viral alkaline exonuclease; This family includes various alkaline exonucleases from members of ... |
39-261 | 2.83e-14 | |||||
Viral alkaline exonuclease; This family includes various alkaline exonucleases from members of the Herpesviridae and Baculoviridae. Alkaline exonuclease appears to have an important role in the replication of herpes simplex virus. Pssm-ID: 396366 Cd Length: 460 Bit Score: 74.33 E-value: 2.83e-14
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PDDEXK_lambda_exonuclease-like | cd22343 | Uncharacterized nucleases similar to lambda phage exonuclease; This model characterizes a ... |
48-238 | 2.87e-10 | |||||
Uncharacterized nucleases similar to lambda phage exonuclease; This model characterizes a diverse set of nucleases such as alkaline exonuclease from Laribacter hongkongensis, lambda phage exonuclease, or a Cas4-like protein from the Mimivirus virophage resistance element system. They belong to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI. Pssm-ID: 411747 [Multi-domain] Cd Length: 182 Bit Score: 58.89 E-value: 2.87e-10
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Blast search parameters | ||||
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