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Conserved domains on  [gi|291612345|ref|YP_003540773|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Hypsiglena ochrorhyncha nuchalata]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
2-321 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 557.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   2 ITTILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  82 IMALTLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMAT 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 162 ISGGYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 242 TLSTMMFINPGTTN--PQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTALCGIP 319
Cdd:MTH00111 241 TLTTILFLNPSTLNlpPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320

                 ..
gi 291612345 320 PQ 321
Cdd:MTH00111 321 PQ 322
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
2-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 557.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   2 ITTILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  82 IMALTLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMAT 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 162 ISGGYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 242 TLSTMMFINPGTTN--PQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTALCGIP 319
Cdd:MTH00111 241 TLTTILFLNPSTLNlpPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320

                 ..
gi 291612345 320 PQ 321
Cdd:MTH00111 321 PQ 322
NADHdh pfam00146
NADH dehydrogenase;
13-308 1.19e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 340.99  E-value: 1.19e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   13 LLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMALTLALTSW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   93 APIPM--PMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGGYSLLS 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  171 FTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLSTMMFIN 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  251 pGTTNPQLF--TMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLY 308
Cdd:pfam00146 243 -GWLGPFPLpgLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLT 301
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-307 1.71e-107

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 316.30  E-value: 1.71e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   2 ITTILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSP 81
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  82 IMALTLALTSWAPIPM--PMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISM 159
Cdd:COG1005   85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 160 ATISGGYSLLSFTEAQE-NLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNIL 238
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 291612345 239 LMNTLSTMMF-------INPGTTNPQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLL 307
Cdd:COG1005  245 LVSALATTLFlggwlgpFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
2-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 557.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   2 ITTILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  82 IMALTLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMAT 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 162 ISGGYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 242 TLSTMMFINPGTTN--PQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTALCGIP 319
Cdd:MTH00111 241 TLTTILFLNPSTLNlpPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320

                 ..
gi 291612345 320 PQ 321
Cdd:MTH00111 321 PQ 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-321 1.26e-168

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 471.01  E-value: 1.26e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   1 MITTILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLS 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  81 PIMALTLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMA 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 161 TISGGYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 241 NTLSTMMFINPGT--TNPQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTALCGI 318
Cdd:MTH00134 241 NTLSAILFLGASHipTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320

                 ...
gi 291612345 319 PPQ 321
Cdd:MTH00134 321 PPQ 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
4-321 2.37e-168

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 470.26  E-value: 2.37e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   4 TILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIM 83
Cdd:MTH00071   3 TLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTM 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  84 ALTLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATIS 163
Cdd:MTH00071  83 ALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLT 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 164 GGYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTL 243
Cdd:MTH00071 163 GGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTL 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 244 STMMFINPGT--TNPQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTALCGIPPQ 321
Cdd:MTH00071 243 STILFLGSTYnhLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
9-321 2.31e-161

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 452.54  E-value: 2.31e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   9 TINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMALTLA 88
Cdd:MTH00104   3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  89 LTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGGYSL 168
Cdd:MTH00104  83 LTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTL 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 169 LSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLSTMMF 248
Cdd:MTH00104 163 STLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILF 242
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 291612345 249 INP--GTTNPQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTALCGIPPQ 321
Cdd:MTH00104 243 LGAfhNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
4-320 1.21e-142

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 405.51  E-value: 1.21e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   4 TILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIM 83
Cdd:MTH00040   2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  84 ALTLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATIS 163
Cdd:MTH00040  82 FLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFS 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 164 GGYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTL 243
Cdd:MTH00040 162 GSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLL 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 244 STMMFINPGTTNPQLFTMNLMM---KTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTALCGIPP 320
Cdd:MTH00040 242 SVILFLGGGSPFNEIFPINIIIvgiKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
5-320 1.36e-142

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 404.68  E-value: 1.36e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   5 ILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMA 84
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  85 LTLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISG 164
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 165 GYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLS 244
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 291612345 245 TMMFINPGTTnpqlfTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTALCGIPP 320
Cdd:MTH00218 241 VILFLGTSLT-----TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
NADHdh pfam00146
NADH dehydrogenase;
13-308 1.19e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 340.99  E-value: 1.19e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   13 LLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMALTLALTSW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   93 APIPM--PMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGGYSLLS 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  171 FTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLSTMMFIN 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  251 pGTTNPQLF--TMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLY 308
Cdd:pfam00146 243 -GWLGPFPLpgLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLT 301
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
6-309 1.86e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 335.69  E-value: 1.86e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   6 LLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMAL 85
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  86 TLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGG 165
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 166 YSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLST 245
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 291612345 246 MMFINPGTTNPQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYF 309
Cdd:MTH00143 241 VLFFGGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFV 304
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
5-310 1.29e-114

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 333.66  E-value: 1.29e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   5 ILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMA 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  85 LTLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISG 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 165 GYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLS 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 291612345 245 TMMFINPGttnpqLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFS 310
Cdd:MTH00193 241 VLMFLGGD-----LLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFG 301
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
5-307 1.73e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 318.22  E-value: 1.73e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   5 ILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMA 84
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  85 LTLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISG 164
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 165 GYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLS 244
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 291612345 245 TMMFINPGTtnpqlfTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLL 307
Cdd:MTH00195 241 TILFLGGGG------TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIP 297
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-307 1.71e-107

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 316.30  E-value: 1.71e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   2 ITTILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSP 81
Cdd:COG1005    5 LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAP 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  82 IMALTLALTSWAPIPM--PMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISM 159
Cdd:COG1005   85 ILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGV 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 160 ATISGGYSLLSFTEAQE-NLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNIL 238
Cdd:COG1005  165 VLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMF 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 291612345 239 LMNTLSTMMF-------INPGTTNPQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLL 307
Cdd:COG1005  245 LVSALATTLFlggwlgpFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
10-320 2.23e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 313.20  E-value: 2.23e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  10 INTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMALTLAL 89
Cdd:MTH00054   6 IKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAF 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  90 TSWAPIPM--PMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGGYS 167
Cdd:MTH00054  86 IAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLN 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 168 LLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLSTMM 247
Cdd:MTH00054 166 LTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVIL 245
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 291612345 248 FIN-----PGTTNPQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTALCGIPP 320
Cdd:MTH00054 246 FLGgwlviSGPTSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
1-320 1.17e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 308.97  E-value: 1.17e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   1 MITTILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLS 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  81 PIMALTLALTSWAPIPMP--MPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIIS 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 159 MATISGGYSLLSFTEAQEN-LWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNI 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 238 LLMNTLSTMMFINPGTTNPQLFTMN---LMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFSTSTA 314
Cdd:MTH00216 241 ILMSCLTTILFLGGWLSPIKYFKGGagwFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFG 320

                 ....*.
gi 291612345 315 LCGIPP 320
Cdd:MTH00216 321 FNGPPP 326
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
6-310 7.12e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 306.19  E-value: 7.12e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   6 LLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMAL 85
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  86 TLALTSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGG 165
Cdd:MTH00225  81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 166 YSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLST 245
Cdd:MTH00225 161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 291612345 246 MMFINPGTTNPQLFtmnLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFS 310
Cdd:MTH00225 241 ILFFGGFFVTIDLF---LILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-307 1.50e-101

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 300.96  E-value: 1.50e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   1 MITTILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLS 80
Cdd:PRK06076   5 GPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  81 PIMALTLALTSWAPIPM--PMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIIS 158
Cdd:PRK06076  85 PVIAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLA 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 159 MATISGGYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNIL 238
Cdd:PRK06076 165 VVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMI 244
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 291612345 239 LMNTLSTMMFIN------PGTTNPQLFTMnLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLL 307
Cdd:PRK06076 245 LVSALITTLFLGgwlppfPLGGGIPGAIW-FVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
2-320 5.10e-90

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 272.28  E-value: 5.10e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   2 ITTILLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSP 81
Cdd:MTH00029   3 IYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAP 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  82 IMALTLALTSWAPIPMPMP--LTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISM 159
Cdd:MTH00029  83 IISFTLAILAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISV 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 160 ATISGGYSLLSFTEAQENLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILL 239
Cdd:MTH00029 163 ILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIIL 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 240 MNTLSTMMFIN------------------PGTTNPQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLT 301
Cdd:MTH00029 243 MSCMMTIFFLGgwlspldgiptppeafsiFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLS 322
                        330
                 ....*....|....*....
gi 291612345 302 LAMCLLYFSTSTALCGIPP 320
Cdd:MTH00029 323 LGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
10-310 2.90e-83

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 253.93  E-value: 2.90e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  10 INTLLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMALTLAL 89
Cdd:MTH00010   7 ISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILAL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  90 TSWAPIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGGYSLL 169
Cdd:MTH00010  87 LLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFS 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 170 SFTEAQeNLWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLSTMMFI 249
Cdd:MTH00010 167 KIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFT 245
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 291612345 250 nPGTTNPQLFTMNLMMKTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYFS 310
Cdd:MTH00010 246 -SFIPSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIP 305
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
13-309 5.00e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 213.99  E-value: 5.00e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  13 LLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMALTLALTSW 92
Cdd:MTH00090   3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  93 APIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGGYSLLSft 172
Cdd:MTH00090  83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS-- 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 173 eaQENLWFLLpswpLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLSTMMFinpg 252
Cdd:MTH00090 161 --SFSLSLFV----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLF---- 230
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 291612345 253 ttnpqlFTMNLMMKTTILtSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYF 309
Cdd:MTH00090 231 ------FKFSFLMLFLIF-SLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFV 280
ndhA CHL00032
NADH dehydrogenase subunit 1
13-307 5.36e-49

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 167.44  E-value: 5.36e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  13 LLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMALTLALTSW 92
Cdd:CHL00032  34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSY 113
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  93 APIPMP--MPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGGYSLLS 170
Cdd:CHL00032 114 LVIPFGyhLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVD 193
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 171 FTEAQENLWFLlpSWPL------AMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLS 244
Cdd:CHL00032 194 IVEAQSKYGFW--GWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFV 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 245 TMMFIN------PGTTNPQLFTMNLM---MKTTI-------LTSMFLWI----RASYPRFRYDQLMHLLWKQYLPLTLAM 304
Cdd:CHL00032 272 TVLYLGgwnlsiPYIFIPELFEINKTggvFGTTIgifitlaKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISLGN 351

                 ...
gi 291612345 305 CLL 307
Cdd:CHL00032 352 LLL 354
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
13-302 1.45e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 164.33  E-value: 1.45e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  13 LLYILSILIAVAFLTLLERKLMGYMQHRKGPNIVGPAGILQPIADGLKLITKETTKPTMSSPILFTLSPIMALTLALTSW 92
Cdd:MTH00058   8 LEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYC 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  93 APIPMPMPLTNMNLALLFIMAMSGMFTYTILWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMATISGGYSLLSFT 172
Cdd:MTH00058  88 FIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFY 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 173 EAQENLWFLLPswPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILLMNTLSTMMFINpG 252
Cdd:MTH00058 168 YSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFG-G 244
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 291612345 253 TTNPQLFTMNLMmkttiltsMFLWIRASYPRFRYDQLMHLLWKQYLPLTL 302
Cdd:MTH00058 245 GFVSIMLLFHLL--------FFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-309 5.45e-33

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 123.37  E-value: 5.45e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345   6 LLNTINTLLYILSILIAVAFLTLLERKLMGYMQHRKGPnivgpaGILQPIADGLKLITKETTKPTMSSPIlFTLSPIMAL 85
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345  86 TLALTSWAPIPMPMPLTNMN-----LALLFIMAMSGMFTytiLWSGWSSNSKYPLMGAMRAVAQIISYEVTLGLIIISMA 160
Cdd:COG0650   74 AAMLLAALLVPVLTTGPPLSfsgdlIVLVYLLALARFFL---ALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291612345 161 TISGGYSLLSFTEAQEN---LWFLLPSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNI 237
Cdd:COG0650  151 LLAGSTSLSDIVAYQAAhgpLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 291612345 238 LLMNTLSTMMFINPGTTNPQLFTMNLMM-KTTILTSMFLWIRASYPRFRYDQLMHLLWKQYLPLTLAMCLLYF 309
Cdd:COG0650  231 FVLLSLFVNLFLPWGIALTLLLALLLFLlKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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