NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|353526379|ref|YP_004927451|]
View 

orf119 (mitochondrion) [Brassica oleracea]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Mitovir_RNA_pol super family cl05469
Mitovirus RNA-dependent RNA polymerase; This family consists of several Mitovirus ...
 11-94 2.03e-10

Mitovirus RNA-dependent RNA polymerase; This family consists of several Mitovirus RNA-dependent RNA polymerase proteins. The family also contains fragment matches in the mitochondria of Arabidopsis thaliana.


The actual alignment was detected with superfamily member pfam05919:

Pssm-ID: 253459  Cd Length: 495  Bit Score: 56.24  E-value: 2.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 353526379   11 RTFNQTQPFDRLV---GSRHSFSFDLKSATDRWPLVFLFEVVQYLFDRYFASS----VVNSafacnifevPFVKLKRRFs 83
Cdd:pfam05919 130 GTFDQEPPLKRLTekhKSKYFYSFDLSAATDRLPITLQKRILSHIVGDSFGEAwrnlLVGR---------PYLKVGGGP- 199

                          90
                  ....*....|.
gi 353526379   84 qVCFVAGQPLG 94
Cdd:pfam05919 200 -LRYSVGQPMG 209
 
Name Accession Description Interval E-value
Mitovir_RNA_pol pfam05919
Mitovirus RNA-dependent RNA polymerase; This family consists of several Mitovirus ...
 11-94 2.03e-10

Mitovirus RNA-dependent RNA polymerase; This family consists of several Mitovirus RNA-dependent RNA polymerase proteins. The family also contains fragment matches in the mitochondria of Arabidopsis thaliana.


Pssm-ID: 253459  Cd Length: 495  Bit Score: 56.24  E-value: 2.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 353526379   11 RTFNQTQPFDRLV---GSRHSFSFDLKSATDRWPLVFLFEVVQYLFDRYFASS----VVNSafacnifevPFVKLKRRFs 83
Cdd:pfam05919 130 GTFDQEPPLKRLTekhKSKYFYSFDLSAATDRLPITLQKRILSHIVGDSFGEAwrnlLVGR---------PYLKVGGGP- 199

                          90
                  ....*....|.
gi 353526379   84 qVCFVAGQPLG 94
Cdd:pfam05919 200 -LRYSVGQPMG 209
 
Name Accession Description Interval E-value
Mitovir_RNA_pol pfam05919
Mitovirus RNA-dependent RNA polymerase; This family consists of several Mitovirus ...
 11-94 2.03e-10

Mitovirus RNA-dependent RNA polymerase; This family consists of several Mitovirus RNA-dependent RNA polymerase proteins. The family also contains fragment matches in the mitochondria of Arabidopsis thaliana.


Pssm-ID: 253459  Cd Length: 495  Bit Score: 56.24  E-value: 2.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 353526379   11 RTFNQTQPFDRLV---GSRHSFSFDLKSATDRWPLVFLFEVVQYLFDRYFASS----VVNSafacnifevPFVKLKRRFs 83
Cdd:pfam05919 130 GTFDQEPPLKRLTekhKSKYFYSFDLSAATDRLPITLQKRILSHIVGDSFGEAwrnlLVGR---------PYLKVGGGP- 199

                          90
                  ....*....|.
gi 353526379   84 qVCFVAGQPLG 94
Cdd:pfam05919 200 -LRYSVGQPMG 209
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH