NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|391224046|ref|YP_006460259|]
View 

ATPase subunit 6 (mitochondrion) [Candida albicans]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-243 1.93e-48

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


:

Pssm-ID: 273458  Cd Length: 226  Bit Score: 159.29  E-value: 1.93e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046    5 PLDQFEIKPLLMVNniltlaLTNYTLYLIIVVSIIFGytSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFP 84
Cdd:TIGR01131   1 LFSQFDISPITLFS------LTLLSLILLLSLLIFLI--SSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFP 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046   85 LIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEALSYS 164
Cdd:TIGR01131  73 LIFTLFLFILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYL 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 391224046  165 SRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSILGFIggivpIVAVIAITILEVGIAIIQAYVFSILLSGYIKDSV 243
Cdd:TIGR01131 153 ARPISLSVRLFANISAGHLLLTLLSGLLFSLMSSAIFALL-----LLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
 
Name Accession Description Interval E-value
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-243 1.93e-48

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 159.29  E-value: 1.93e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046    5 PLDQFEIKPLLMVNniltlaLTNYTLYLIIVVSIIFGytSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFP 84
Cdd:TIGR01131   1 LFSQFDISPITLFS------LTLLSLILLLSLLIFLI--SSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFP 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046   85 LIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEALSYS 164
Cdd:TIGR01131  73 LIFTLFLFILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYL 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 391224046  165 SRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSILGFIggivpIVAVIAITILEVGIAIIQAYVFSILLSGYIKDSV 243
Cdd:TIGR01131 153 ARPISLSVRLFANISAGHLLLTLLSGLLFSLMSSAIFALL-----LLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-246 2.81e-43

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 146.69  E-value: 2.81e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046   1 MFYSPLDQFEIKPLLMVNNILTLALTNYTLYLIIVVSIIFGYTSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGG 80
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIQAFLGDWLVTFTNSSMMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  81 HFFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEA 160
Cdd:MTH00175  81 KYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIET 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 161 LSYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSILgfIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIK 240
Cdd:MTH00175 161 LSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNGLI--ILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLG 238


                 ....*.
gi 391224046 241 DSVSLH 246
Cdd:MTH00175 239 DTIALH 244
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 82-240 1.53e-36

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 126.36  E-value: 1.53e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  82 FFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEAL 161
Cdd:cd00310    4 YLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELI 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 391224046 162 SYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMsssilgFIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIK 240
Cdd:cd00310   84 SELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLL------SSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
29-240 1.64e-36

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 127.99  E-value: 1.64e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046   29 TLYLIIVVSIIFGYTSIISNGRLGS--TRWGVAIIAIYDTILNLVYSQIGKAGGH-FFPLIFTIFNLIFAANLISMI--- 102
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLvpGRLQNFVEMLVEFVDNIVKDNIGKKKGRkFFPLLLTLFFFILVSNLLGLIpks 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  103 PYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWG--FFALFVPSgTPLPLVPILVLIEALSYSSRAISLGLRLGANILS 180
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGgyFKKLFVPP-VPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLA 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  181 GHLLMLILGSLIVNLMSssiLGFIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIK 240
Cdd:pfam00119 160 GHLLLLLLAGLIFALLS---AGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 32-244 6.33e-28

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 105.54  E-value: 6.33e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  32 LIIVVSIIFGYTSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFPLIFTIFNLIFAANLISMIPYSFAISAQ 111
Cdd:COG0356    7 WLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTAD 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 112 LVAIVSFSLALWIGNVILGLYLHGWGFFA--LFVPSGtpLPLVPILVLIEALSYSSRAISLGLRLGANILSGHLLMLILG 189
Cdd:COG0356   87 INVTLALALIVFVLVHYYGIKKKGLGGYLkhLFFPPF--PWLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLA 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 391224046 190 SLIVnlmsssilGFIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIKDSVS 244
Cdd:COG0356  165 GLAP--------FLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISLAVE 211
 
Name Accession Description Interval E-value
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-243 1.93e-48

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 159.29  E-value: 1.93e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046    5 PLDQFEIKPLLMVNniltlaLTNYTLYLIIVVSIIFGytSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFP 84
Cdd:TIGR01131   1 LFSQFDISPITLFS------LTLLSLILLLSLLIFLI--SSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFP 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046   85 LIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEALSYS 164
Cdd:TIGR01131  73 LIFTLFLFILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYL 152

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 391224046  165 SRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSILGFIggivpIVAVIAITILEVGIAIIQAYVFSILLSGYIKDSV 243
Cdd:TIGR01131 153 ARPISLSVRLFANISAGHLLLTLLSGLLFSLMSSAIFALL-----LLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-246 2.81e-43

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 146.69  E-value: 2.81e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046   1 MFYSPLDQFEIKPLLMVNNILTLALTNYTLYLIIVVSIIFGYTSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGG 80
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIQAFLGDWLVTFTNSSMMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  81 HFFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEA 160
Cdd:MTH00175  81 KYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIET 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 161 LSYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSILgfIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIK 240
Cdd:MTH00175 161 LSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNGLI--ILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLG 238


                 ....*.
gi 391224046 241 DSVSLH 246
Cdd:MTH00175 239 DTIALH 244
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 23-246 1.67e-38

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 134.01  E-value: 1.67e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  23 LALTNYTLYLIIVVSIIFGYTSIIsngRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFPLIFTIFNLIFAANLISMI 102
Cdd:MTH00172  15 IGLTNSSIMMILVIIVVLLLFKGI---KLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFFFIVFLNLLGLF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 103 PYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEALSYSSRAISLGLRLGANILSGH 182
Cdd:MTH00172  92 PYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGH 171

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 391224046 183 LLMLILGSLIVNLMSSSilgFIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIKDSVSLH 246
Cdd:MTH00172 172 LLFAILAGFGFNMLCAS---GFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIVLH 232
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 82-240 1.53e-36

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 126.36  E-value: 1.53e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  82 FFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEAL 161
Cdd:cd00310    4 YLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPIELI 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 391224046 162 SYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMsssilgFIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIK 240
Cdd:cd00310   84 SELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLL------SSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
29-240 1.64e-36

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 127.99  E-value: 1.64e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046   29 TLYLIIVVSIIFGYTSIISNGRLGS--TRWGVAIIAIYDTILNLVYSQIGKAGGH-FFPLIFTIFNLIFAANLISMI--- 102
Cdd:pfam00119   1 LLMSLIVALILLLFLLLATRKTKKLvpGRLQNFVEMLVEFVDNIVKDNIGKKKGRkFFPLLLTLFFFILVSNLLGLIpks 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  103 PYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWG--FFALFVPSgTPLPLVPILVLIEALSYSSRAISLGLRLGANILS 180
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGgyFKKLFVPP-VPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLA 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  181 GHLLMLILGSLIVNLMSssiLGFIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIK 240
Cdd:pfam00119 160 GHLLLLLLAGLIFALLS---AGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 32-238 6.99e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 119.28  E-value: 6.99e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  32 LIIVVSIIFGYTSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFPLIFTIFNLIFAANLISMIPYSFAISAQ 111
Cdd:MTH00179  19 LLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFLLTLNLLGLLPYTFTPTTQ 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 112 LVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEALSYSSRAISLGLRLGANILSGHLLMLILGSL 191
Cdd:MTH00179  99 LSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVRLTANITAGHLLMHLISSA 178

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 391224046 192 IVNLMssSILGFIgGIVPIVAVIAITILEVGIAIIQAYVFSILLSGY 238
Cdd:MTH00179 179 VFVLM--NFMGMV-ALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLY 222
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 33-239 2.56e-28

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 107.37  E-value: 2.56e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  33 IIVVSIIFGYTSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFPLIFTIFNLIFAANLISMIPYSFAISAQL 112
Cdd:MTH00035  23 LLSSVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILILSINVLGLFPYAFTSTSHI 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 113 VAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEALSYSSRAISLGLRLGANILSGHLLMLILGSLI 192
Cdd:MTH00035 103 SLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLAANLTAGHLLIFLLSTAI 182

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 391224046 193 VNLMSSSILGFIggivPIVAVIAITILEVGIAIIQAYVFSILLSGYI 239
Cdd:MTH00035 183 WELSNSPLISII----TLIIFFLLFILEIGVACIQAYVFTALVHFYL 225
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 25-246 5.12e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 106.95  E-value: 5.12e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  25 LTNYTLYLIIVVSIIFGYTSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFPLIFTIFNLIFAANLISMIPY 104
Cdd:MTH00174  33 FTNTFFMMSFAVFLFYTIGAKGNNNTLVPNRILVGLELIYSHFYTVLKDNLGNKGGNYLAFVLSLFILILFGNGLGLFPY 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 105 SFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEALSYSSRAISLGLRLGANILSGHLL 184
Cdd:MTH00174 113 VFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLL 192

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 391224046 185 MLILGSLIVNLMSSSILgfIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIKDSVSLH 246
Cdd:MTH00174 193 FSIIASFAWKMINTGIL--IGSFVPFAILIFVTILEMAVAIIQAYVFTLLTIVYLRDTVELH 252
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 32-244 6.33e-28

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 105.54  E-value: 6.33e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  32 LIIVVSIIFGYTSIISNGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFPLIFTIFNLIFAANLISMIPYSFAISAQ 111
Cdd:COG0356    7 WLAMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTAD 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 112 LVAIVSFSLALWIGNVILGLYLHGWGFFA--LFVPSGtpLPLVPILVLIEALSYSSRAISLGLRLGANILSGHLLMLILG 189
Cdd:COG0356   87 INVTLALALIVFVLVHYYGIKKKGLGGYLkhLFFPPF--PWLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLA 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 391224046 190 SLIVnlmsssilGFIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIKDSVS 244
Cdd:COG0356  165 GLAP--------FLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISLAVE 211
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 19-246 1.39e-27

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 105.26  E-value: 1.39e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  19 NILTLALTNYTLYLIIVVSIIFGYTSIIS-NGRLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFPLIFTIFNLIFAAN 97
Cdd:PRK05815   8 GFGGFNFDSLLLSVLLGVLILLLFALVATrKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  98 LISMIP-YSFAISAQLVAIVSFSLALWIGNVILGLYLHG-WGFFALFVPSgtplpLVPILVLIEALSYSSRAISLGLRLG 175
Cdd:PRK05815  88 LLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKKGlGGYLKEFYLQ-----PHPLLLPIEIISEFSRPISLSLRLF 162

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 391224046 176 ANILSGHLLMLILGSLIVnlmsssiLGFIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIKDSVSLH 246
Cdd:PRK05815 163 GNMLAGELILALIALLGG-------AGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISMAVEEE 226
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 93-241 8.28e-26

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 100.41  E-value: 8.28e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  93 IFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEALSYSSRAISLGL 172
Cdd:MTH00101  79 IGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAV 158

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 391224046 173 RLGANILSGHLLMLILGSLIVNLMSSSilgFIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIKD 241
Cdd:MTH00101 159 RLTANITAGHLLIHLIGGATLALMSIS---TTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHD 224
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 88-239 1.23e-25

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 99.86  E-value: 1.23e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  88 TIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEALSYSSRA 167
Cdd:MTH00157  74 SLFSFILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRP 153

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 391224046 168 ISLGLRLGANILSGHLLMLILGSLIVNLMSSSILGFiggivpIVAVIAITILEVGIAIIQAYVFSILLSGYI 239
Cdd:MTH00157 154 GTLAVRLAANMIAGHLLLTLLGNTGPSLSSMILSIL------ILIQILLLILESAVAIIQSYVFSVLSTLYS 219
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 73-238 5.66e-24

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 95.66  E-value: 5.66e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  73 SQIGKAGGHFFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLV 152
Cdd:MTH00120  60 LPLNKKGHKWALILTSLMLLLLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLI 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 153 PILVLIEALSYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSILGFiggIVPIVAVIAITILEVGIAIIQAYVFS 232
Cdd:MTH00120 140 PALILIETISLLIRPLALGVRLTANLTAGHLLIQLISTATLNLLPTMPTLS---LLTLIILLLLTILELAVAMIQAYVFV 216


                 ....*.
gi 391224046 233 ILLSGY 238
Cdd:MTH00120 217 LLLSLY 222
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 79-243 3.04e-23

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 93.78  E-value: 3.04e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  79 GGHFFPLIFT-IFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVL 157
Cdd:MTH00132  65 GGHKWALLLTsLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLII 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 158 IEALSYSSRAISLGLRLGANILSGHLLM-LILGSLIVNLMSSSILGFIGGIVpivaVIAITILEVGIAIIQAYVFSILLS 236
Cdd:MTH00132 145 IETISLFIRPLALGVRLTANLTAGHLLIqLIATAAFVLLPLMPTVAILTATL----LFLLTLLEVAVAMIQAYVFVLLLS 220


                 ....*..
gi 391224046 237 GYIKDSV 243
Cdd:MTH00132 221 LYLQENV 227
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 51-238 4.14e-23

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 93.39  E-value: 4.14e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  51 LGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILG 130
Cdd:MTH00173  40 VSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSG 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 131 LYLHGWGFFALFVPSGTPLPLVPILVLIEALSYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSilGFIGGIVPI 210
Cdd:MTH00173 120 LFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYLSSSLFSS--SVVSLLLVL 197

                        170       180
                 ....*....|....*....|....*...
gi 391224046 211 VAVIAITILEVGIAIIQAYVFSILLSGY 238
Cdd:MTH00173 198 LIQVGYFIFEVAVMLIQAYIFTLLIKLY 225
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 76-241 3.43e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 91.25  E-value: 3.43e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  76 GKAGGHFFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPIL 155
Cdd:MTH00176  65 GSYILGSASIIISLFILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFL 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 156 VLIEALSYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSILgfIGGIVPIVAVIAItILEVGIAIIQAYVFSILL 235
Cdd:MTH00176 145 VLIELVSLLIRPLTLAVRLAANLSAGHLLLGLLGAAMWGLLPVSPL--IGFLLLIVQILYF-MFEIAVCMIQAYVFTLLL 221


                 ....*.
gi 391224046 236 SGYIKD 241
Cdd:MTH00176 222 SLYLDE 227
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 82-241 3.98e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 90.95  E-value: 3.98e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  82 FFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLIEAL 161
Cdd:MTH00005  73 FSSLISALFTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETI 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 162 SYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSILGFiggIVPIVAVIAITILEVGIAIIQAYVFSILLSGYIKD 241
Cdd:MTH00005 153 SILVRPITLSFRLAANMSAGHIVLSLIGIYAASALFSSISST---ILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 80-243 5.29e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 90.41  E-value: 5.29e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  80 GHFFPLIFT-IFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLVPILVLI 158
Cdd:MTH00073  66 GHKWALILTsLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIII 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 159 EALSYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSIlgfIGGIVPIVAVIAITILEVGIAIIQAYVFSILLSGY 238
Cdd:MTH00073 146 ETISLFIRPLALGVRLTANLTAGHLLIQLISTATLVLLPLMP---TVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLY 222


                 ....*
gi 391224046 239 IKDSV 243
Cdd:MTH00073 223 LQENV 227
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 73-239 5.53e-10

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 58.60  E-value: 5.53e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  73 SQIGKAGGHFFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHGWGFFALFVPSGTPLPLV 152
Cdd:PRK13419 161 SNIGHGYEKFLPYLLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHLTGGTHWSLW 240

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 153 PILVLIEALSYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMSssilgfiggivPIVAV-------IAITILEVGIAI 225
Cdd:PRK13419 241 IIMIPIEFIGLFTKPFALTVRLFANMTAGHIVILSLIFISFILKS-----------YIVAVavsvpfaIFIYLLELFVAF 309

                        170
                 ....*....|....
gi 391224046 226 IQAYVFSILLSGYI 239
Cdd:PRK13419 310 LQAYIFTMLSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 130-246 8.25e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 49.12  E-value: 8.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 130 GLYLHGWGFFALFVPSGTPLPLVPILVLIE-ALSYSSRAISLGLRLGANILSGHLLMLILGSLIVNLMSSSILgfiggIV 208
Cdd:PRK13417 240 GFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVIILALMGFIFQFQSWGIV-----PV 314

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 391224046 209 PIVAVIAITILEVGIAIIQAYVFSILLSGYIKDSVSLH 246
Cdd:PRK13417 315 SVIGSGLIYVLEIFVAFLQAYIFVLLTSLFVGLSMHRH 352
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 82-244 1.29e-05

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 45.07  E-value: 1.29e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  82 FFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVILGLYLHG-WGFFALFvpsGTPLPLVPILVLIEA 160
Cdd:PRK13421  77 YRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGVRARGvRGYLATF---AEPTWVMIPLNLVEQ 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 161 LsysSRAISLGLRLGANILSGHLLMLIlgslivnlmsssILGFIGGIVPivavIAITILEVGIAIIQAYVFSILLSGYIK 240
Cdd:PRK13421 154 L---TRTFSLIVRLFGNVMSGVFVIGI------------VLSLAGLLVP----IPLMALDLLTGAVQAYIFAVLAMVFIG 214


                 ....
gi 391224046 241 DSVS 244
Cdd:PRK13421 215 AAVS 218
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 50-239 1.00e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 39.34  E-value: 1.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046  50 RLGSTRWGVAIIAIYDTILNLVYSQIGKAGGHFFPLIFTIFNLIFAANLISMIPYSFAISAQLVAIVSFSLALWIGNVIL 129
Cdd:PRK13420  42 SLDPGRFQVALEGVVSTIEDAIKEVLPRHARLVLPFVGTLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWF 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 391224046 130 GLYLHGWG--FFALFVPSgtplplvPILVLIEALSYSSRAISLGLRLGANILSGHLLMLIlgslivnlmsssILGFIGGI 207
Cdd:PRK13420 122 GIRAEGLReyLKHYLSPS-------PFLLPFHLISEITRTLALAVRLFGNIMSLELAALL------------VLLVAGFL 182

                        170       180       190
                 ....*....|....*....|....*....|..
gi 391224046 208 VPivavIAITILEVGIAIIQAYVFSILLSGYI 239
Cdd:PRK13420 183 VP----VPILMLHIIEALVQAYIFGMLALIYI 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH