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Conserved domains on  [gi|501595003|ref|YP_007889790|]
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ATPase subunit 8 (mitochondrion) [Vigna angularis]

Protein Classification

ATP synthase subunit B family protein( domain architecture ID 10492040)

ATP synthase subunit B family protein such as subunits b and b' from the F(o) complex in F-type ATP synthase (FoF1-ATPase) found in chloroplasts and in bacterial plasma membranes; the b subunits are part of the peripheral stalk that links the F(1) and F(o) complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YMF19 pfam02326
Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant ...
 2-82 3.07e-24

Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).


:

Pssm-ID: 396760  Cd Length: 84  Bit Score: 89.76  E-value: 3.07e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501595003    2 PQLDKFTYFTQFFWSCLFLFTFYIPICNdgDGVLGISRILKLRNQLVSNRG----NKIRSNDPKSLEDIFRKG-LSTGVS 76
Cdd:pfam02326   1 PQLDKFTYFTQFFWLCLFFFTFYIFLLN--FILPKISRILKLRKKLLSSLIssklGKEQSLLGVSKDSLLANSsLSTSNS 78


                  ....*.
gi 501595003   77 YMYSSL 82
Cdd:pfam02326  79 YLYSSL 84
YMF19_C pfam06449
ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the ...
 93-144 1.80e-16

ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the F0 complex of mitochondrial F-ATPases from plants. This family is found in conjunction with pfam02326.


:

Pssm-ID: 368914  Cd Length: 51  Bit Score: 69.33  E-value: 1.80e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 501595003   93 DLLGKRRKITFLSCFGEISGSRGMERNILYLIsKSSYGASSSNPGWVITSRN 144
Cdd:pfam06449   1 DLFGKRRIITFIECFGEISGSRGMERNIFYLI-SKSSYNTSSNPGWGITCRN 51
 
Name Accession Description Interval E-value
YMF19 pfam02326
Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant ...
 2-82 3.07e-24

Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).


Pssm-ID: 396760  Cd Length: 84  Bit Score: 89.76  E-value: 3.07e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501595003    2 PQLDKFTYFTQFFWSCLFLFTFYIPICNdgDGVLGISRILKLRNQLVSNRG----NKIRSNDPKSLEDIFRKG-LSTGVS 76
Cdd:pfam02326   1 PQLDKFTYFTQFFWLCLFFFTFYIFLLN--FILPKISRILKLRKKLLSSLIssklGKEQSLLGVSKDSLLANSsLSTSNS 78


                  ....*.
gi 501595003   77 YMYSSL 82
Cdd:pfam02326  79 YLYSSL 84
YMF19_C pfam06449
ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the ...
 93-144 1.80e-16

ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the F0 complex of mitochondrial F-ATPases from plants. This family is found in conjunction with pfam02326.


Pssm-ID: 368914  Cd Length: 51  Bit Score: 69.33  E-value: 1.80e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 501595003   93 DLLGKRRKITFLSCFGEISGSRGMERNILYLIsKSSYGASSSNPGWVITSRN 144
Cdd:pfam06449   1 DLFGKRRIITFIECFGEISGSRGMERNIFYLI-SKSSYNTSSNPGWGITCRN 51
ATP8 MTH00169
ATP synthase F0 subunit 8; Provisional
 1-72 3.68e-05

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 214446  Cd Length: 67  Bit Score: 39.96  E-value: 3.68e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501595003   1 MPQLDKFTYFTQFFWSCLFLFTFYIpicndgdgvLGISRIL-KLRNQLV----SNRGNKIRSNDPKSLedIFRKGLS 72
Cdd:MTH00169   1 MPQLDSVTYLTQYIWTLIILFFLFS---------LLVNYILpKIQQQLVirtkGVNSVEGKKERPKIE--IFKKLFD 66
 
Name Accession Description Interval E-value
YMF19 pfam02326
Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant ...
 2-82 3.07e-24

Plant ATP synthase F0; This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).


Pssm-ID: 396760  Cd Length: 84  Bit Score: 89.76  E-value: 3.07e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 501595003    2 PQLDKFTYFTQFFWSCLFLFTFYIPICNdgDGVLGISRILKLRNQLVSNRG----NKIRSNDPKSLEDIFRKG-LSTGVS 76
Cdd:pfam02326   1 PQLDKFTYFTQFFWLCLFFFTFYIFLLN--FILPKISRILKLRKKLLSSLIssklGKEQSLLGVSKDSLLANSsLSTSNS 78


                  ....*.
gi 501595003   77 YMYSSL 82
Cdd:pfam02326  79 YLYSSL 84
YMF19_C pfam06449
ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the ...
 93-144 1.80e-16

ATP synthase YMF19, C-terminal; This domain represents the C-terminal region of YMF19 of the F0 complex of mitochondrial F-ATPases from plants. This family is found in conjunction with pfam02326.


Pssm-ID: 368914  Cd Length: 51  Bit Score: 69.33  E-value: 1.80e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 501595003   93 DLLGKRRKITFLSCFGEISGSRGMERNILYLIsKSSYGASSSNPGWVITSRN 144
Cdd:pfam06449   1 DLFGKRRIITFIECFGEISGSRGMERNIFYLI-SKSSYNTSSNPGWGITCRN 51
ATP8 MTH00169
ATP synthase F0 subunit 8; Provisional
 1-72 3.68e-05

ATP synthase F0 subunit 8; Provisional


Pssm-ID: 214446  Cd Length: 67  Bit Score: 39.96  E-value: 3.68e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 501595003   1 MPQLDKFTYFTQFFWSCLFLFTFYIpicndgdgvLGISRIL-KLRNQLV----SNRGNKIRSNDPKSLedIFRKGLS 72
Cdd:MTH00169   1 MPQLDSVTYLTQYIWTLIILFFLFS---------LLVNYILpKIQQQLVirtkGVNSVEGKKERPKIE--IFKKLFD 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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