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Conserved domains on  [gi|511065315|ref|YP_008083033|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Ascidiella aspersa]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
10-96 4.02e-03

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00181:

Pssm-ID: 444937  Cd Length: 93  Bit Score: 33.38  E-value: 4.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511065315 10 LIMSILVLLLGMSVLYCFPLKYLVMLECLYLLVGVLFAMSTQLGE--VWGWLFLFFMVFGACEGVMVLSLNMILGKFVGM 87
Cdd:MTH00181  5 FISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSssSMLMFGLILLTFSACEAVLGLSLLVATNRTHGS 84

                ....*....
gi 511065315 88 MKFTKFYKW 96
Cdd:MTH00181 85 DHLLKFNLL 93
 
Name Accession Description Interval E-value
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
10-96 4.02e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 33.38  E-value: 4.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511065315 10 LIMSILVLLLGMSVLYCFPLKYLVMLECLYLLVGVLFAMSTQLGE--VWGWLFLFFMVFGACEGVMVLSLNMILGKFVGM 87
Cdd:MTH00181  5 FISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSssSMLMFGLILLTFSACEAVLGLSLLVATNRTHGS 84

                ....*....
gi 511065315 88 MKFTKFYKW 96
Cdd:MTH00181 85 DHLLKFNLL 93
 
Name Accession Description Interval E-value
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
10-96 4.02e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 33.38  E-value: 4.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 511065315 10 LIMSILVLLLGMSVLYCFPLKYLVMLECLYLLVGVLFAMSTQLGE--VWGWLFLFFMVFGACEGVMVLSLNMILGKFVGM 87
Cdd:MTH00181  5 FISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSssSMLMFGLILLTFSACEAVLGLSLLVATNRTHGS 84

                ....*....
gi 511065315 88 MKFTKFYKW 96
Cdd:MTH00181 85 DHLLKFNLL 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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