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Conserved domains on  [gi|554753070|ref|YP_008719773|]
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hypothetical protein PA3969a [Pseudomonas aeruginosa PAO1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK05590 super family cl40796
hypothetical protein; Provisional
 162-180 1.89e-05

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PRK05590:

Pssm-ID: 235521  Cd Length: 166  Bit Score: 43.04  E-value: 1.89e-05
                         10
                 ....*....|....*....
gi 554753070 162 GRGDQaCPCGSGKRYRNCC 180
Cdd:PRK05590 146 GRNDP-CPCGSGKKYKKCC 163
 
Name Accession Description Interval E-value
PRK05590 PRK05590
hypothetical protein; Provisional
 162-180 1.89e-05

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 43.04  E-value: 1.89e-05
                         10
                 ....*....|....*....
gi 554753070 162 GRGDQaCPCGSGKRYRNCC 180
Cdd:PRK05590 146 GRNDP-CPCGSGKKYKKCC 163
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 162-184 3.14e-05

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 43.48  E-value: 3.14e-05
                         10        20
                 ....*....|....*....|...
gi 554753070 162 GRGDqACPCGSGKRYRNCCSRLV 184
Cdd:COG0653  855 GRND-PCPCGSGKKYKHCHGKLA 876
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 166-182 1.58e-04

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 37.46  E-value: 1.58e-04
                          10
                  ....*....|....*..
gi 554753070  166 QACPCGSGKRYRNCCSR 182
Cdd:pfam02810   3 DPCPCGSGKKYKKCCGP 19
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 162-180 1.13e-03

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 36.90  E-value: 1.13e-03
                          10
                  ....*....|....*....
gi 554753070  162 GRGDqACPCGSGKRYRNCC 180
Cdd:TIGR04102  90 NRND-PCPCGSGKKYKKCC 107
 
Name Accession Description Interval E-value
PRK05590 PRK05590
hypothetical protein; Provisional
 162-180 1.89e-05

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 43.04  E-value: 1.89e-05
                         10
                 ....*....|....*....
gi 554753070 162 GRGDQaCPCGSGKRYRNCC 180
Cdd:PRK05590 146 GRNDP-CPCGSGKKYKKCC 163
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 162-184 3.14e-05

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 43.48  E-value: 3.14e-05
                         10        20
                 ....*....|....*....|...
gi 554753070 162 GRGDqACPCGSGKRYRNCCSRLV 184
Cdd:COG0653  855 GRND-PCPCGSGKKYKHCHGKLA 876
PRK01617 PRK01617
hypothetical protein; Provisional
 162-182 9.71e-05

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 40.79  E-value: 9.71e-05
                         10        20
                 ....*....|....*....|.
gi 554753070 162 GRGDqACPCGSGKRYRNCCSR 182
Cdd:PRK01617 135 GRND-PCPCGSGKKFKKCCGQ 154
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 166-182 1.58e-04

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 37.46  E-value: 1.58e-04
                          10
                  ....*....|....*..
gi 554753070  166 QACPCGSGKRYRNCCSR 182
Cdd:pfam02810   3 DPCPCGSGKKYKKCCGP 19
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 166-184 2.73e-04

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 40.84  E-value: 2.73e-04
                         10
                 ....*....|....*....
gi 554753070 166 QACPCGSGKRYRNCCSRLV 184
Cdd:PRK12904 812 DPCPCGSGKKYKHCHGRLA 830
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 165-185 3.28e-04

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 39.06  E-value: 3.28e-04
                         10        20
                 ....*....|....*....|.
gi 554753070 165 DQACPCGSGKRYRNCCSRLVA 185
Cdd:COG3012    3 NSPCPCGSGKPYADCCGPYHA 23
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 162-182 8.23e-04

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 36.03  E-value: 8.23e-04
                         10        20
                 ....*....|....*....|.
gi 554753070 162 GRGDqACPCGSGKRYRNCCSR 182
Cdd:COG3318   25 GRND-PCPCGSGKKYKKCCGA 44
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 162-180 1.13e-03

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 36.90  E-value: 1.13e-03
                          10
                  ....*....|....*....
gi 554753070  162 GRGDqACPCGSGKRYRNCC 180
Cdd:TIGR04102  90 NRND-PCPCGSGKKYKKCC 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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