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Conserved domains on  [gi|620695142|ref|YP_009027381|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Lepus americanus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 595.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTI 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 620695142 241 LFLGSFHSHTNPEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIPPHM 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 595.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTI 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 620695142 241 LFLGSFHSHTNPEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIPPHM 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
7-303 4.39e-124

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 357.17  E-value: 4.39e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142    7 FLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTLALSMW 86
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   87 LPIPMPYPLI--NLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSFTLSS 164
Cdd:pfam00146  83 AVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  165 LITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTILFLG 244
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 620695142  245 SFHSHTNPEMFtVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMW 303
Cdd:pfam00146 243 GWLGPFPLPGL-LWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-299 3.31e-116

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 338.26  E-value: 3.31e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:COG1005   10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPM--PYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNG 158
Cdd:COG1005   90 PALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 159 SFTLSSLITTQE-YMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNAL 237
Cdd:COG1005  170 SLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 620695142 238 TTILFLGSFHSHTNPEMFT-----VNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLA 299
Cdd:COG1005  250 ATTLFLGGWLGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 595.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTI 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 620695142 241 LFLGSFHSHTNPEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIPPHM 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 552.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   3 LINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTLA 82
Cdd:MTH00111   8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  83 LSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSFTL 162
Cdd:MTH00111  88 LTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 163 SSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTILF 242
Cdd:MTH00111 168 QTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILF 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 620695142 243 LGSFHSHTNPEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIPPHM 318
Cdd:MTH00111 248 LNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-316 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 529.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00071   6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:MTH00071  86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTI 240
Cdd:MTH00071 166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 620695142 241 LFLGSFHSHTNPEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIPP 316
Cdd:MTH00071 246 LFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 523.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00134   7 THIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALT 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:MTH00134  87 LALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTI 240
Cdd:MTH00134 167 TLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 620695142 241 LFLGSFHSHTNPEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIPPHM 318
Cdd:MTH00134 247 LFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 3-316 1.25e-152

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 430.10  E-value: 1.25e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   3 LINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTLA 82
Cdd:MTH00218   5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  83 LSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSFTL 162
Cdd:MTH00218  85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 163 SSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTILF 242
Cdd:MTH00218 165 EGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILF 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 620695142 243 LGSFHShtnpemfTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIPP 316
Cdd:MTH00218 245 LGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-318 1.37e-147

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 417.84  E-value: 1.37e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00040   5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:MTH00040  85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTI 240
Cdd:MTH00040 165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 241 LFLGSfhSHTNPEMFTVN---FAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIPPH 317
Cdd:MTH00040 245 LFLGG--GSPFNEIFPINiiiVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPN 322


                 .
gi 620695142 318 M 318
Cdd:MTH00040 323 Y 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-313 7.11e-126

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 362.14  E-value: 7.11e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00195   3 ISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:MTH00195  83 LALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTI 240
Cdd:MTH00195 163 DFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTI 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 620695142 241 LFLGSFHshtnpemfTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSS 313
Cdd:MTH00195 243 LFLGGGG--------TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
7-303 4.39e-124

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 357.17  E-value: 4.39e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142    7 FLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTLALSMW 86
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   87 LPIPMPYPLI--NLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSFTLSS 164
Cdd:pfam00146  83 AVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  165 LITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTILFLG 244
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 620695142  245 SFHSHTNPEMFtVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMW 303
Cdd:pfam00146 243 GWLGPFPLPGL-LWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 3-302 9.89e-122

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 351.48  E-value: 9.89e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   3 LINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTLA 82
Cdd:MTH00143   4 LLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  83 LSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSFTL 162
Cdd:MTH00143  84 LLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSF 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 163 SSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTILF 242
Cdd:MTH00143 164 IEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLF 243

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 243 LGSfhSHTNPEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCM 302
Cdd:MTH00143 244 FGG--SSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-309 1.39e-120

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 348.68  E-value: 1.39e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00193   3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:MTH00193  83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTI 240
Cdd:MTH00193 163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 620695142 241 LFLGSfhshtnpEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPV 309
Cdd:MTH00193 243 MFLGG-------DLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-299 3.31e-116

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 338.26  E-value: 3.31e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:COG1005   10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPM--PYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNG 158
Cdd:COG1005   90 PALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 159 SFTLSSLITTQE-YMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNAL 237
Cdd:COG1005  170 SLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 620695142 238 TTILFLGSFHSHTNPEMFT-----VNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLA 299
Cdd:COG1005  250 ATTLFLGGWLGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-306 1.02e-114

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 333.54  E-value: 1.02e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00225   2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:MTH00225  82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTI 240
Cdd:MTH00225 162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 620695142 241 LFLGSFHshtnpEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHIS 306
Cdd:MTH00225 242 LFFGGFF-----VTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-316 1.16e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 329.38  E-value: 1.16e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:MTH00054   3 IIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPM--PYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNG 158
Cdd:MTH00054  83 LAFIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 159 SFTLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALT 238
Cdd:MTH00054 163 SLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFG 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 239 TILFLGSFHSHTNPEMFTVN---FAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIP 315
Cdd:MTH00054 243 VILFLGGWLVISGPTSYFSNfvwFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALP 322


                 .
gi 620695142 316 P 316
Cdd:MTH00054 323 P 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-316 7.71e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 324.77  E-value: 7.71e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   2 FLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTL 81
Cdd:MTH00216   8 YLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  82 ALSMWLPIPMPYPLI--NLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGS 159
Cdd:MTH00216  88 ALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 160 FTLSSLITTQ-EYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALT 238
Cdd:MTH00216 168 LSITEIVLAQnNGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLT 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 239 TILFLGSFHSHTnPEMFTVN--FAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHISMPVTLSSIPP 316
Cdd:MTH00216 248 TILFLGGWLSPI-KYFKGGAgwFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-303 2.94e-110

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 322.91  E-value: 2.94e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALT 80
Cdd:PRK06076  11 LILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  81 LALSMWLPIPM--PYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNG 158
Cdd:PRK06076  91 PAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 159 SFTLSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALT 238
Cdd:PRK06076 171 SLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALI 250

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 620695142 239 TILFLGSFHSHTNPEMFT---VNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMW 303
Cdd:PRK06076 251 TTLFLGGWLPPFPLGGGIpgaIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 2-311 2.35e-97

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 289.76  E-value: 2.35e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   2 FLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTL 81
Cdd:MTH00010   5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  82 ALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSFT 161
Cdd:MTH00010  85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 162 LSSLITTQeYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTIL 241
Cdd:MTH00010 165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 242 FLGSFHSHTNPEMFTVnfaAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMwhISMPVTL 311
Cdd:MTH00010 244 FTSFIPSIFISDLMLI---LKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMF 308
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 4-316 9.41e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 276.90  E-value: 9.41e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   4 INTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTLAL 83
Cdd:MTH00029  11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  84 SMWLPIPMPYP--LINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSFT 161
Cdd:MTH00029  91 LAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 162 LSSLITTQEYMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTIL 241
Cdd:MTH00029 171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 242 FLGSFHSH-----TNPEMFTVN-----------FAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMWHI 305
Cdd:MTH00029 251 FLGGWLSPldgipTPPEAFSIFeqiasskssfwFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTA 330

                        330
                 ....*....|.
gi 620695142 306 SMPVTLSSIPP 316
Cdd:MTH00029 331 GILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 7-298 1.37e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 202.44  E-value: 1.37e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   7 FLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTLALSMW 86
Cdd:MTH00090   3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  87 LPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSFTLSSli 166
Cdd:MTH00090  83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS-- 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 167 ttqEYMWILFPAWplaMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTILFlgsf 246
Cdd:MTH00090 161 ---SFSLSLFVIY---LPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLF---- 230

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 620695142 247 hshtnpemFTVNFAAKTLLLTMtFLWIRASYPRFRYDQLMHLLWKSFLPLTL 298
Cdd:MTH00090 231 --------FKFSFLMLFLIFSL-LIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-298 3.93e-56

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 185.93  E-value: 3.93e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   3 LINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTLA 82
Cdd:CHL00032  30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISI 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  83 LSMWLPIPMPYPLI--NLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSF 160
Cdd:CHL00032 110 LLSYLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 161 TLSSLITTQEYMWILfpAWPL------AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMM 234
Cdd:CHL00032 190 STVDIVEAQSKYGFW--GWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVS 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 235 NALTTILFLGSFHSH----TNPEMFTVNFAAK----------TLLLTMTFLWI----RASYPRFRYDQLMHLLWKSFLPL 296
Cdd:CHL00032 268 SLFVTVLYLGGWNLSipyiFIPELFEINKTGGvfgttigifiTLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPI 347


                 ..
gi 620695142 297 TL 298
Cdd:CHL00032 348 SL 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 3-298 2.41e-54

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 178.96  E-value: 2.41e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   3 LINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLRPLTSSSLLFIIAPTLALTLA 82
Cdd:MTH00058   4 LVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  83 LSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNGSFTL 162
Cdd:MTH00058  84 VFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 163 SSLITTQEYMWILFPawPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMNALTTILF 242
Cdd:MTH00058 164 VDFYYSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLF 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 620695142 243 LGSfhshtnpeMFTVNFAAKTLLLtmtFLWIRASYPRFRYDQLMHLLWKSFLPLTL 298
Cdd:MTH00058 242 FGG--------GFVSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
1-303 4.24e-36

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 131.84  E-value: 4.24e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142   1 MFLINTFLLILPVLLAMAFLTLVERKILGYMQLRKGPnivgpyGLLQPFADAIKLFTKEPLRPlTSSSLLFIIAPTLAL- 79
Cdd:COG0650    2 MLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVALa 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142  80 -TLALSMWLPIPMPYPLINLNMGVLFILATSSLAVYSILWSGWASNSKYALFGALRAVAQTISYEVTLAIILLCVLLMNG 158
Cdd:COG0650   75 aMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 620695142 159 SFTLSSLITTQE---YMWILFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYINIIMMN 235
Cdd:COG0650  155 STSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLL 234

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 620695142 236 ALTTILFLGsFHSHTNPEMFTVNFAAKTLLLTMTFLWIRASYPRFRYDQLMHLLWKSFLPLTLALCMW 303
Cdd:COG0650  235 SLFVNLFLP-WGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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