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Conserved domains on  [gi|642277077|ref|YP_009034421|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Fistularia petimba]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 7.81e-70

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 204.38  E-value: 7.81e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTVLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 642277077  81 QLPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 7.81e-70

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 204.38  E-value: 7.81e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTVLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 642277077  81 QLPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 3.89e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.56  E-value: 3.89e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   20 VVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLlpLPWGDQLP-FPLTTFIWASSVLLL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFReLGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 642277077   99 LTLGLIYEWLQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-114 4.18e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.94  E-value: 4.18e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   7 VLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLlpLPWGDQL-PFP 85
Cdd:COG0838   11 FLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFrELG 88

                         90       100
                 ....*....|....*....|....*....
gi 642277077  86 LTTFIWASSVLLLLTLGLIYEWLQGGLEW 114
Cdd:COG0838   89 WFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 7.81e-70

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 204.38  E-value: 7.81e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTVLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 642277077  81 QLPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 7.55e-57

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 171.72  E-value: 7.55e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   3 LITTVLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGDQL 82
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 642277077  83 PFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWAE 116
Cdd:MTH00069  81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 1.98e-50

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 155.42  E-value: 1.98e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   2 NLITTVLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGDQ 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 642277077  82 LPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWA 115
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 7.08e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 138.92  E-value: 7.08e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTvLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00106   1 MNLMLT-LLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 642277077  81 QLPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWAE 116
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 1.29e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 125.40  E-value: 1.29e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTVLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 642277077  81 QLPFPltTFIWASSVLLLLTLGLIYEWLQGGLEW 114
Cdd:MTH00203  81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 3.20e-37

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 122.01  E-value: 3.20e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTVLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGD 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 642277077  81 QLPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWAE 116
Cdd:MTH00042  81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 3.58e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 91.46  E-value: 3.58e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTVLAITALLSVVLAVVSFWL-PLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWG 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLsKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 642277077  80 DQLPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWAE 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
20-113 3.89e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.56  E-value: 3.89e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   20 VVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLlpLPWGDQLP-FPLTTFIWASSVLLL 98
Cdd:pfam00507   2 LLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFReLGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*
gi 642277077   99 LTLGLIYEWLQGGLE 113
Cdd:pfam00507  80 LLVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-114 5.19e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 90.99  E-value: 5.19e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   3 LITTVLAITALLSVVLAVVSFWLPLMTP-DSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGDQ 81
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSImDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 642277077  82 LPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEW 114
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-114 2.07e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 84.38  E-value: 2.07e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   4 ITTVLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLlpLPWGDQLP 83
Cdd:MTH00055   8 IFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYN 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 642277077  84 FPLTTFIWASSVLLLLTLG-LIYEWLQGGLEW 114
Cdd:MTH00055  86 QIGLFGFWVMYLFLIILTIgLIYEWVKGGLEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 2.87e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 83.89  E-value: 2.87e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTVLAITALLSVVLAVVSFWLPLMT-PDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWG 79
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSlMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 642277077  80 DQLPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWAE 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 7-114 4.18e-21

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 80.94  E-value: 4.18e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   7 VLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLlpLPWGDQL-PFP 85
Cdd:COG0838   11 FLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFrELG 88

                         90       100
                 ....*....|....*....|....*....
gi 642277077  86 LTTFIWASSVLLLLTLGLIYEWLQGGLEW 114
Cdd:COG0838   89 WFGLIEMLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-115 5.69e-21

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 80.68  E-value: 5.69e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   8 LAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLlpLPWGDQLP-FPL 86
Cdd:PRK06602  15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFReIGW 92

                         90       100
                 ....*....|....*....|....*....
gi 642277077  87 TTFIWASSVLLLLTLGLIYEWLQGGLEWA 115
Cdd:PRK06602  93 LGFVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 8-114 1.75e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 79.34  E-value: 1.75e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   8 LAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWGDQLPFPLT 87
Cdd:MTH00018   7 LIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFG 86

                         90       100
                 ....*....|....*....|....*..
gi 642277077  88 TFIWAsSVLLLLTLGLIYEWLQGGLEW 114
Cdd:MTH00018  87 FWTMV-GFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 6.93e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 77.98  E-value: 6.93e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTVLAITALLSVVLAVVSFWLPLM-TPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLPWG 79
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARsTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 642277077  80 DQLPFPLTTFIWASSVLLLLTLGLIYEWLQGGLEWA 115
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 10-114 4.04e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.42  E-value: 4.04e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077  10 ITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLlpLPWGDQL-PFPLTT 88
Cdd:MTH00030  19 ILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFnQLNLFS 96

                         90       100
                 ....*....|....*....|....*.
gi 642277077  89 FIWASSVLLLLTLGLIYEWLQGGLEW 114
Cdd:MTH00030  97 FWIVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 1-114 1.03e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 51.98  E-value: 1.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   1 MNLITTVL---AITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLP--FSMRFFLVAILFLLFDLEIALLLP 75
Cdd:PRK07928   1 MNVYIPILvlgALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 642277077  76 -------LPW---GDQLPFPLTTFIwassvlllltlGLIYEWLQGGLEW 114
Cdd:PRK07928  81 wavsfdaLGVfglVEMALFMLTVFV-----------AYAYVWRRGGLEW 118
ndhC CHL00022
NADH dehydrogenase subunit 3
 13-114 8.52e-09

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 49.60  E-value: 8.52e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077  13 LLSVVLAVVSFWLP-LMTPDS---EKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLlpLPWG---DQLpfP 85
Cdd:CHL00022  15 IISSLIPILAFLISgLLAPISkgpEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAmsfDVL--G 90

                         90       100
                 ....*....|....*....|....*....
gi 642277077  86 LTTFIWASSVLLLLTLGLIYEWLQGGLEW 114
Cdd:CHL00022  91 VSAFIEALIFVLILIVGLVYAWRKGALEW 119
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 7-74 8.01e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 44.11  E-value: 8.01e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 642277077   7 VLAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLL 74
Cdd:MTH00092   7 VFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
8-114 4.51e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 42.42  E-value: 4.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077   8 LAITALLSVVLAVVSFWLPLMTPDSEKLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPlpWG---DQLPf 84
Cdd:PRK07756  16 LLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAvayDKLG- 92

                         90       100       110
                 ....*....|....*....|....*....|
gi 642277077  85 pLTTFIWASSVLLLLTLGLIYEWLQGGLEW 114
Cdd:PRK07756  93 -LFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
34-114 7.78e-05

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 39.26  E-value: 7.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 642277077  34 KLSPYECGFDPLGSARlPFSMRFFLVAILFLLFDLEIALLLPLPWGDQLpFPLTTFIWASSVLLLLTLGLIYEWLQGGLE 113
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKL-LGLFGLIEMLLFIVLLTIGFIYAWKKGALE 124


                 .
gi 642277077 114 W 114
Cdd:PRK08489 125 W 125
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-77 2.23e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 37.57  E-value: 2.23e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 642277077  36 SPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLP 77
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 5-77 8.57e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 33.43  E-value: 8.57e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 642277077   5 TTVLAITALLSVVLAVVSFWLPLMTPDSE----KLSPYECGFDPLGSARLPFSMRFFLVAILFLLFDLEIALLLPLP 77
Cdd:PRK06073   7 ALAFGLVIVLGLAAGVGTYKLLKLILPSKptplKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIA 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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