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Conserved domains on  [gi|827046112|ref|YP_009142424|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Platycnemis foliacea]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-446 1.90e-145

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 422.26  E-value: 1.90e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112   1 MLKFIFFIVFMTPLCFFINYWYIL-SFLFLGSFIYLVFGYLNFFVCNIDYYFCSDVLSYGFILLSFWICCLMFLSSGSVY 79
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVqSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  80 NHYNFFLFLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFN 159
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 160 FYFTLNTLNIYmcFFLLNLDFGFYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLI 239
Cdd:MTH00163 161 LYNNSGSLSFF--LLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFF 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 240 FKLGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLA 319
Cdd:MTH00163 239 SKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLA 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 320 NISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYL 399
Cdd:MTH00163 319 NIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYL 398
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*..
gi 827046112 400 YSFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLFIVKFNLLFDW 446
Cdd:MTH00163 399 YSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-446 1.90e-145

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 422.26  E-value: 1.90e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112   1 MLKFIFFIVFMTPLCFFINYWYIL-SFLFLGSFIYLVFGYLNFFVCNIDYYFCSDVLSYGFILLSFWICCLMFLSSGSVY 79
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVqSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  80 NHYNFFLFLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFN 159
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 160 FYFTLNTLNIYmcFFLLNLDFGFYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLI 239
Cdd:MTH00163 161 LYNNSGSLSFF--LLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFF 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 240 FKLGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLA 319
Cdd:MTH00163 239 SKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLA 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 320 NISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYL 399
Cdd:MTH00163 319 NIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYL 398
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*..
gi 827046112 400 YSFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLFIVKFNLLFDW 446
Cdd:MTH00163 399 YSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
107-389 3.42e-51

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 174.81  E-value: 3.42e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  107 SLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIY----MCFFLLNLDFGF 182
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDelskALTGGLNSSGLL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  183 YVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGGLLVS 262
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  263 LICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLA-NISYERVGSRSLLINKGLMNLM 341
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTM 242
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 827046112  342 PSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLS 389
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
108-400 7.31e-48

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 171.03  E-value: 7.31e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYqPERMQAGIYLLFYTLFASLPLLISIFNFYFT--LNTLNIymcFFLLNLDFG---- 181
Cdd:COG1008  133 LFLFYVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLagALTFDI---AELAAAPLPltaq 208
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 182 FYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRvFSL-IFKLGS-TFNIMIVGVSLLGGL 259
Cdd:COG1008  209 LLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLR-FALpLFPEASaYFAPLLAALGVIGII 287
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 260 LVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMN 339
Cdd:COG1008  288 YGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAK 367
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 827046112 340 LMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLY 400
Cdd:COG1008  368 RMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
108-400 2.20e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 153.17  E-value: 2.20e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  108 LFMFYLFFESSLIPTFFLILGWGyQPERMQAGIYLLFYTLFASLPLLISIFNFYF-TLNTLNIYMcffLLNLDFGFYV-- 184
Cdd:TIGR01972 128 LFLFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLE---LLNLPLPFGVqt 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  185 --YISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGST-FNIMIVGVSLLGGLLV 261
Cdd:TIGR01972 204 wlFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLyFAPVLAALGVIAIIYG 283
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  262 SLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLM 341
Cdd:TIGR01972 284 ALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKM 363
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 827046112  342 PSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLY 400
Cdd:TIGR01972 364 PVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-446 1.90e-145

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 422.26  E-value: 1.90e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112   1 MLKFIFFIVFMTPLCFFINYWYIL-SFLFLGSFIYLVFGYLNFFVCNIDYYFCSDVLSYGFILLSFWICCLMFLSSGSVY 79
Cdd:MTH00163   1 MLKFLFMLLFLIPLCFLKNSWWLVqSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  80 NHYNFFLFLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFN 159
Cdd:MTH00163  81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 160 FYFTLNTLNIYmcFFLLNLDFGFYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLI 239
Cdd:MTH00163 161 LYNNSGSLSFF--LLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFF 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 240 FKLGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLA 319
Cdd:MTH00163 239 SKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLA 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 320 NISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYL 399
Cdd:MTH00163 319 NIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYL 398
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*..
gi 827046112 400 YSFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLFIVKFNLLFDW 446
Cdd:MTH00163 399 YSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
49-447 4.37e-112

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 336.04  E-value: 4.37e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  49 YYFCSDVLSYGFILLSFWICCLMFLSSGSVYNHYNFFLFLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILG 128
Cdd:MTH00150  18 ELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLLILG 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 129 WGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYMCFFLLNLDFGF-YVYISMVLAFLVKMPMFIFHLWLPK 207
Cdd:MTH00150  98 WGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSMgLWGLLVFLAFLVKLPMYPFHLWLPK 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 208 AHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVL 287
Cdd:MTH00150 178 AHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVL 257
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 288 GGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGE 367
Cdd:MTH00150 258 AGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSE 337
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 368 ISLLNGIISWSWISLFVVCLLSFFSAAYTLYLYSFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLFIVKFNLLFDWL 447
Cdd:MTH00150 338 IMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFMWI 417
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
1-444 3.46e-111

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 335.03  E-value: 3.46e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112   1 MLKFIFFIVFMTPLCFFINYWYILSFLFLGSFIYLVFGYLNFFV--CNIDYYFCSDVLSYGFILLSFWICCLMFLSSGSV 78
Cdd:MTH00205   1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLmtSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  79 YNHYNFFLFLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIF 158
Cdd:MTH00205  81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 159 NFYFTLNTLNIYMCFFLLNLDF-GFYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFS 237
Cdd:MTH00205 161 FLNSLNFSLSMFFNFPLNFSDFyLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 238 LIFKLGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFC 317
Cdd:MTH00205 241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 318 LANISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTL 397
Cdd:MTH00205 321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*..
gi 827046112 398 YLYSFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLFIVKFNLLF 444
Cdd:MTH00205 401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-447 1.98e-107

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 325.54  E-value: 1.98e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112   1 MLKFIFFIVFMTPLCFFINYWY----ILSFLFLGSFIYLVFGYLNFFVCNIDYYFCSDVLSYGFILLSFWICCLMFLSSG 76
Cdd:MTH00014   1 MLKLIMPLISLLLLPLIKYPWSwaltFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  77 SVYNHYNFFLFLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLIS 156
Cdd:MTH00014  81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 157 IFNFYFTLNTLNIYMCFFLLNLDFGF-YVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRV 235
Cdd:MTH00014 161 ILLIFYTNNSLSMLMSSMEPPSIYLMnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 236 FSLIFKLGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGM 315
Cdd:MTH00014 241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 316 FCLANISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAY 395
Cdd:MTH00014 321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|..
gi 827046112 396 TLYLYSFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLFIVKFNLLFDWL 447
Cdd:MTH00014 401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLITNWL 452
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
105-439 1.92e-98

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 302.50  E-value: 1.92e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 105 TSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYMCF----FLLNLDF 180
Cdd:MTH00124 112 ATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQlthpTLTNSWT 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 181 GFYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGGLL 260
Cdd:MTH00124 192 NLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALM 271
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 261 VSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNL 340
Cdd:MTH00124 272 TSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLL 351
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 341 MPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLYSFSQHGKIFSCVYSLNSGYL 420
Cdd:MTH00124 352 LPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHT 431
                        330
                 ....*....|....*....
gi 827046112 421 REYLLLFLHWIPLNLFIVK 439
Cdd:MTH00124 432 REHLLMTLHIIPLLLLILK 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-444 1.78e-95

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 294.96  E-value: 1.78e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112   1 MLKFIFFIVFMTPLCFFINYWYILSFLFLGSF------IYLVFGYLNFFVCNIDYYFCSDVLSYGFILLSFWICCLMFLS 74
Cdd:MTH00044   1 MITLILLSLGIAITSWIVPKNKLWPISISQSSlisllsLFLLNNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  75 SGSVYNHYNFFLFLFSLVLLLLFFLVLTFSTSS--LFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLP 152
Cdd:MTH00044  81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSleLILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 153 LLISIFNFYFTLNTLNIYMcFFLLNLDFGFYVYISM-----VLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKL 227
Cdd:MTH00044 161 LLISLIAIYSSSSSLSIPL-SELNWLTSLSSNSSSIwwifcILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKL 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 228 GGYGLLRVFSlIFKLGSTFNI--MIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLM 305
Cdd:MTH00044 240 GGYGLIRLIN-LFSLPSANNIsfILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILM 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 306 IAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVV 385
Cdd:MTH00044 319 IAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPII 398
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 827046112 386 CLLSFFSAAYTLYLYSFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLFIVKFNLLF 444
Cdd:MTH00044 399 GLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
105-447 2.33e-89

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 279.11  E-value: 2.33e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 105 TSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYMCFFLLNLDFGFYV 184
Cdd:MTH00068 112 ATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPLLIALLILQNSLGSLSLILLELMSPMQLMTYT 191
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 185 ----YISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGGLL 260
Cdd:MTH00068 192 nkiwWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLM 271
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 261 VSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNL 340
Cdd:MTH00068 272 TSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTI 351
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 341 MPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLYSFSQHGKIFSCVYSLNSGYL 420
Cdd:MTH00068 352 LPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYT 431
                        330       340
                 ....*....|....*....|....*..
gi 827046112 421 REYLLLFLHWIPLNLFIVKFNLLFDWL 447
Cdd:MTH00068 432 REHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
4-443 9.01e-88

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 274.89  E-value: 9.01e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112   4 FIFFIVFMTPLCFFINYWYILSFLFLGSFIYLVFGYLNFFVCNIDYYFCSDVLSYGFILLSFWICCLMFLSSGSVYNHYN 83
Cdd:MTH00206   8 MLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNHMKNEP 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  84 FFL--FLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFY 161
Cdd:MTH00206  88 INRqrIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFLQ 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 162 FTLNTLNIYMCFFLLNLD-FGFYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIF 240
Cdd:MTH00206 168 NSLGSLSLYILYFSKLTTwNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILG 247
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 241 KLGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLAN 320
Cdd:MTH00206 248 PSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLAN 327
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 321 ISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLY 400
Cdd:MTH00206 328 LLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMF 407
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 827046112 401 SFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLFIVKFNLL 443
Cdd:MTH00206 408 VMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-436 5.92e-83

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 262.52  E-value: 5.92e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112   1 MLKFIFFIVFMTPLCFFINYWYI----LSFLFLGSFIYLVFGY-LNFFVCNIDYYFCSDVLSYGFILLSFWICCLMFLSS 75
Cdd:MTH00110   1 MLKIIIPTIMLIPLTWLSKNNMIwintTTYSLLISLISLLLLNqPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  76 GSVYNHYNFFL--FLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPL 153
Cdd:MTH00110  81 QHHLSKEPLTRkkLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 154 LISIFNFYFTLNTLNI-YMCFFLLNLDFGF---YVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGG 229
Cdd:MTH00110 161 LVALLYIQNNLGSLNFlLLQLWAQPLPNSWsnnLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 230 YGLLRVFSLIFKLGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHG 309
Cdd:MTH00110 241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 310 LCSSGMFCLANISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLS 389
Cdd:MTH00110 321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*..
gi 827046112 390 FFSAAYTLYLYSFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLF 436
Cdd:MTH00110 401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLL 447
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
46-446 6.16e-82

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 259.89  E-value: 6.16e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  46 NIDYYFCSDVLSYGFILLSFWICCLMFLSSgsvYNHY-----NFFLFLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLI 120
Cdd:MTH00127  52 SLNLYMATDPLSTPLLVLTCWLLPLMILAS---QNHTapepiNRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLI 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 121 PTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNI----YMCFFLLNLDFGFYVYISMVLAFLVKM 196
Cdd:MTH00127 129 PTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMltlqYSQPLQLSSWADKLWWAGCLLAFLVKM 208
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 197 PMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIA 276
Cdd:MTH00127 209 PLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIA 288
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 277 YSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSMGLWWFLLCSANM 356
Cdd:MTH00127 289 YSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANL 368
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 357 AAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLYSFSQHGKIFSCVYSLNSGYLREYLLLFLHWIPLNLF 436
Cdd:MTH00127 369 ALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLL 448
                        410
                 ....*....|
gi 827046112 437 IVKFNLLFDW 446
Cdd:MTH00127 449 ILKPELIWGW 458
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
107-389 3.42e-51

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 174.81  E-value: 3.42e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  107 SLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIY----MCFFLLNLDFGF 182
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDelskALTGGLNSSGLL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  183 YVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGGLLVS 262
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  263 LICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLA-NISYERVGSRSLLINKGLMNLM 341
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTM 242
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 827046112  342 PSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLS 389
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVG 290
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
108-400 7.31e-48

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 171.03  E-value: 7.31e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYqPERMQAGIYLLFYTLFASLPLLISIFNFYFT--LNTLNIymcFFLLNLDFG---- 181
Cdd:COG1008  133 LFLFYVFWELMLIPMYFLIGIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILALYFLagALTFDI---AELAAAPLPltaq 208
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 182 FYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRvFSL-IFKLGS-TFNIMIVGVSLLGGL 259
Cdd:COG1008  209 LLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLR-FALpLFPEASaYFAPLLAALGVIGII 287
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 260 LVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMN 339
Cdd:COG1008  288 YGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAK 367
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 827046112 340 LMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLY 400
Cdd:COG1008  368 RMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
108-400 1.07e-44

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 162.54  E-value: 1.07e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNiYMCFFLLNLDFG--FYVY 185
Cdd:MTH00204 134 LLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTD-YQILLNIKLPLSiqKWLL 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 186 ISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGST-FNIMIVGVSLLGGLLVSLI 264
Cdd:MTH00204 213 VGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEyFAPLIVMLSVIAVIYGSLT 292
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 265 CLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSM 344
Cdd:MTH00204 293 TCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLF 372
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 827046112 345 GLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLY 400
Cdd:MTH00204 373 VIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
108-400 5.82e-44

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 160.22  E-value: 5.82e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNI-YMCFFLLNLDFGFYVYI 186
Cdd:MTH00217 131 LVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYqALCCLKIEKELQYFIFL 210
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 187 SMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGST-FNIMIVGVSLLGGLLVSLIC 265
Cdd:MTH00217 211 GFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEyFSPLIQTLSLLAIIYGSLTT 290
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 266 LRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSMG 345
Cdd:MTH00217 291 CRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFG 370
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 827046112 346 LWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLY 400
Cdd:MTH00217 371 ILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
108-428 2.13e-42

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 156.52  E-value: 2.13e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYqPERMQAGIYLLFYTLFASLPLLISIFNFYFT----LNTLNIymcFFLLNLDFGFY 183
Cdd:PRK05846 133 LLLFYVFFEAMLIPMYFLIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDI---ADLLNLPLPPG 208
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 184 VYISMVLAFL----VKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRvFSL-IFKLGST-FNIMIVGVSLLG 257
Cdd:PRK05846 209 VQYWLFLAFFiafaVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLR-FSLpLFPDASHeFAPIIITLGVIA 287
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 258 GLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGL 337
Cdd:PRK05846 288 IIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGL 367
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 338 MNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLYSFSQHGKIFSCVYSLNS 417
Cdd:PRK05846 368 AKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKD 447
                        330
                 ....*....|.
gi 827046112 418 GYLREYLLLFL 428
Cdd:PRK05846 448 LNGRELLILLP 458
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
108-400 2.20e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 153.17  E-value: 2.20e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  108 LFMFYLFFESSLIPTFFLILGWGyQPERMQAGIYLLFYTLFASLPLLISIFNFYF-TLNTLNIYMcffLLNLDFGFYV-- 184
Cdd:TIGR01972 128 LFLFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLE---LLNLPLPFGVqt 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  185 --YISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGST-FNIMIVGVSLLGGLLV 261
Cdd:TIGR01972 204 wlFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLyFAPVLAALGVIAIIYG 283
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  262 SLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLM 341
Cdd:TIGR01972 284 ALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKM 363
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 827046112  342 PSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLY 400
Cdd:TIGR01972 364 PVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
108-399 5.99e-41

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 152.77  E-value: 5.99e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLI---SIFNFYFTLNTLNIYMCFFLLNLDFGFYV 184
Cdd:MTH00226 153 IFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLclfSLYNIHGTTDYLTLASCSHVVSEQTQKWI 232
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 185 YISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGS-TFNIMIVGVSLLGGLLVSL 263
Cdd:MTH00226 233 FLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAqNLAPAVIAMGIVGIVYGSF 312
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 264 ICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPS 343
Cdd:MTH00226 313 ATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPI 392
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 827046112 344 MGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYL 399
Cdd:MTH00226 393 WGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFYF 448
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
14-437 2.11e-31

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 124.25  E-value: 2.11e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  14 LCFFINYWYILSFLFLGSFIYLVFGYLNFFVCnidyYFCSDVLSYGFILLSFWICCLMFLSSGSVYNhynfflfLFSLVL 93
Cdd:MTH00094   1 LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGL----FFFFDSFVFVLLIFMMVFILGLVLLSEKNFN-------LLILSN 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  94 LLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFtlntlniYMCF 173
Cdd:MTH00094  70 LLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFF-------FFSL 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 174 FLLNLDFGFYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFsliFKLGSTFNIMIVGV 253
Cdd:MTH00094 143 CYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRIL---GSLNFVYNNFWIIF 219
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 254 SLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLI 333
Cdd:MTH00094 220 SLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYF 299
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 334 NKGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYLYSFSQHGKIFSCVY 413
Cdd:MTH00094 300 MNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFN 379
                        410       420
                 ....*....|....*....|....
gi 827046112 414 SLNSGYLREYLLLFLHWIPLNLFI 437
Cdd:MTH00094 380 NFNVGLSLPLVFMMFNMFWLSLFY 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
54-404 1.88e-28

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 116.40  E-value: 1.88e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  54 DVLSYGFILLSFWICCLMFLSSGSVYNHYNFFLFLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYqP 133
Cdd:COG0651   75 DRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGT-K 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 134 ERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIY-MCFFLLNLDFG--FYVYISMVLAFLVKMPMFIFHLWLPKAHV 210
Cdd:COG0651  154 EALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAdLAARLAELDPGllLAAFALLLVGFGIKAALFPLHFWLPDAYP 233
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 211 EAPVAGSMILAGVLLKLGGYGLLRVFSLIFK--LGSTFNIMIVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLG 288
Cdd:COG0651  234 AAPSPVSALLSGLLTKVGVYAILRVLTLLFGadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILL 313
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 289 GLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSMGlWWFLLCSANMAA-PPTLNLLGE 367
Cdd:COG0651  314 GLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTA-AAFLIGALALAGlPPLSGFVSK 392
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 827046112 368 ISLLNGII-SWSWISLFVVCLLSFFSAAYTLYLYSFSQ 404
Cdd:COG0651  393 WLLLQAALeAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
108-376 1.51e-24

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 105.88  E-value: 1.51e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLfYTLFASLPLLISIFN--FY---FTLNTLNIYMCFFLLNldFGF 182
Cdd:PRK12561 109 LLLFFLMWELELVPVYLLISIWGGQKRLYAATKFIL-YTALASIFILVAGLAlaLSgdtFTFDLAELGAKSYPLA--LEL 185
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 183 YVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRvfsliFKLGSTFNIMIVGVSLLGGLLVS 262
Cdd:PRK12561 186 LLYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIR-----FNVQMLPDAHVYFAPALAILGVV 260
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 263 LI------CLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKG 336
Cdd:PRK12561 261 NIiygalnAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGG 340
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 827046112 337 LMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIIS 376
Cdd:PRK12561 341 LAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLGITS 380
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
108-369 6.37e-21

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 95.15  E-value: 6.37e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYQpERMQAGIYLLFYTLFASLPLLISIFNFY-------FTLNTLNIYmcffLLNLDF 180
Cdd:PRK06473 129 LLLFFLFYELELIPLYLLIAIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVwlsgassFDYEPLRSH----TLPLST 203
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 181 GFYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRV-FSLIFKLGSTFNIMIVGVSLLGGL 259
Cdd:PRK06473 204 QLLLLAPILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFgVGLFPEAWVYLAPWLATWAVVSVL 283
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 260 LVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMN 339
Cdd:PRK06473 284 YGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLN 363
                        250       260       270
                 ....*....|....*....|....*....|
gi 827046112 340 LMPSMGLWWFLLCSANMAAPPTLNLLGEIS 369
Cdd:PRK06473 364 PERGLPITGSLMILGVMASAGIPGMVGFIA 393
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
108-359 1.25e-18

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 88.23  E-value: 1.25e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYQpERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYMCFFLLN---LDFGFYV 184
Cdd:PRK02546 137 MLLFFLAWELELIPVYLLLAIWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKdfgLGFQLLC 215
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 185 YISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRV-FSLIFKLGSTFNIMIVGVSLLGGLLVSL 263
Cdd:PRK02546 216 YAGLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMnAGMLPDAHAQFAPLLIVLGVVNIIYAAL 295
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 264 ICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPS 343
Cdd:PRK02546 296 TSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRK 375
                        250
                 ....*....|....*.
gi 827046112 344 MGLWWFLLCSANMAAP 359
Cdd:PRK02546 376 MFAMWTACSLASLALP 391
ndhD CHL00011
NADH dehydrogenase subunit 4
108-393 4.15e-18

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 86.54  E-value: 4.15e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYQpERMQAGIYLLFYTLFASLPLLISIFNFYF------TLNTLNIYMCFFLLNLDFG 181
Cdd:CHL00011 134 LLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMGLygsnepTLNFETLANQSYPVALEIL 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 182 FYvyISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRV-FSLIFKLGSTFNIMIVGVSLLGGLL 260
Cdd:CHL00011 213 FY--IGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIY 290
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 261 VSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNL 340
Cdd:CHL00011 291 AASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIP 370
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 827046112 341 MPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSA 393
Cdd:CHL00011 371 MPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMA 423
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
105-399 2.51e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 84.16  E-value: 2.51e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 105 TSSLFMFYLFFESSLIPTFFLIlGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYMCFFLL----NLDF 180
Cdd:PRK08375 125 TADLFNLFVFLEIMSLSSYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALaenpTVVT 203
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 181 GFYVyisMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGS----TFNIMIVGVSLL 256
Cdd:PRK08375 204 AFGF---VLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFrfalGLGWLLAVLALL 280
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 257 GGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKG 336
Cdd:PRK08375 281 SMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSG 360
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 827046112 337 LMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGIIS-WSWISLFVVCLLSFFSAAYTLYL 399
Cdd:PRK08375 361 LGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEaGQWLVLAVLLASSLLALLYFLRI 424
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
108-366 2.22e-16

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 81.30  E-value: 2.22e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILGWGYQpERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNI-YMCFFLLNLDFG--FYV 184
Cdd:PRK07363 129 LLLFFLFYELELIPFYLLIAIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFdYDAISTQNLSLNtqLIL 207
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 185 YISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRV-FSLIFKLGSTFNIMIVGVSLLGGLLVSL 263
Cdd:PRK07363 208 LTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFgLQLFPQTWSLVAPGLAIIGTISVIYGAL 287
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 264 ICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPS 343
Cdd:PRK07363 288 SAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRG 367
                        250       260
                 ....*....|....*....|...
gi 827046112 344 MGLWWFLLCSANMAAPPTLNLLG 366
Cdd:PRK07363 368 LPLTSALLVLAGMASAGIPGLVG 390
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
106-438 5.05e-13

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 70.34  E-value: 5.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 106 SSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIfnFYFTLNTLNIYMCFFLLNLDFGFYVY 185
Cdd:MTH00062  91 NNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCL--LYLSLVNGSFNFSDWGSDDSVSLIVY 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 186 ISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFklgSTFNIMIVGVSLLGGLLVSLIC 265
Cdd:MTH00062 169 YVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIF---SGSFLGYLFLCCLFSVFFLITA 245
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 266 LRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSMg 345
Cdd:MTH00062 246 CSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVL- 324
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 346 LWWFLLCSANMAA-PPTLNLLGEISLLnGIISWSWISLFVVCLLSFFSAAYTLYLYSfsqHGKIFSCVYSLNSGYLREYL 424
Cdd:MTH00062 325 RVIVVFSFLSLCSfPPTIQFFCEVFLV-SSSFGVLVYLLFWCFYLFFGGLVPLILLG---HLLIRSESYESINVSNYSYL 400
                        330
                 ....*....|....
gi 827046112 425 LLFLHWIPLNLFIV 438
Cdd:MTH00062 401 FFLIFLVFWCYLGF 414
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
105-396 3.79e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 67.84  E-value: 3.79e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 105 TSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLpLLISIFNFYFTLNTLNIY-MCFFLLNLDFGFY 183
Cdd:PRK12662 129 SNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATF-YLIGIGFLYAITGTLNMGdMFLIIQDLPTNRA 207
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 184 VYISMVLAFL---VKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFK-----LGSTFNIMIVGVSL 255
Cdd:PRK12662 208 IQIGVLFIMVglfIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVFKanfvfTTLPFNNVFMILAA 287
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 256 LGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINK 335
Cdd:PRK12662 288 LAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCL 367
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 827046112 336 GLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGII-SWSWISLFVVCLLSFFSAAYT 396
Cdd:PRK12662 368 NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIkSNAWIGLVVLLVGSGLSVIYV 429
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
54-389 1.24e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 63.45  E-value: 1.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112  54 DVLSYGFILLSFWICCLMFLSSGSVYNHYNFFLFLFSLVLLLLFFLVLTFSTSSLFMFYLFFESSLIPTFFLILGWGYQP 133
Cdd:PRK12667  81 DLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRG 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 134 ERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNI--------YMCFFLLNLDFGFYVYIS------MVLAFLVKMPMF 199
Cdd:PRK12667 161 DAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMadlsakirGLSFPLTGGLAGNPPLALgvalalALWAFTIKAAIF 240
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 200 IFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGS-------TFNIMIVGVSLLGGLLVSLICLRQVDLK 272
Cdd:PRK12667 241 PNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPslidfraALSPILIILGAVSAIIGALMMVVQKDVK 320
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 273 SLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSMGLWWFLLC 352
Cdd:PRK12667 321 RLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGA 400
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 827046112 353 SANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLS 389
Cdd:PRK12667 401 LSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIA 437
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
105-399 1.46e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 63.19  E-value: 1.46e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 105 TSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYMCFFLLNLDFGFYV 184
Cdd:PRK08376 140 TGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVA 219
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 185 YISMVL---AFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLifkLGSTFNI-----MIVGVSLL 256
Cdd:PRK08376 220 KIALALfiaGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVIKQAGLYALARVLFSI---YGPAINLatvgwVIIILGCL 296
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 257 GGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGL---------CTMTYWG---LSGSYSLMIAHGLCSSGMFCLANISYE 324
Cdd:PRK08376 297 TMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLgvglaalgdPAMASYGeiaLAGGIYHIVNHALYKALLFLTAGAVIY 376
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 325 RVGSRSLLINKGLMNLMPSMgLWWFLLCSANMAAPPTLN------LLGEIS-LLNGIISWSWISLFVVCLLSFFSAAYTL 397
Cdd:PRK08376 377 ETGTRNLNELGGLARTMPKT-TIAFLIGAAAIVGLPPFNgfaskwLIYESSaLFNPILGVIAMIGSVLTLASFVKVFHTA 455

                 ..
gi 827046112 398 YL 399
Cdd:PRK08376 456 FF 457
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
188-399 9.06e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 57.46  E-value: 9.06e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 188 MVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFK--LGSTFNIMIVGVSLLGGLLVSLIC 265
Cdd:PRK08676 212 IFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQsgAAEQFSNVLIGLGIFSIAVAAFSM 291
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 266 LRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSMG 345
Cdd:PRK08676 292 LSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAA 371
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 827046112 346 LWWFLLCSANMAAPPTLNLLGEISLLNGIISWS-WISLFVVCLLSFFSAAYTLYL 399
Cdd:PRK08676 372 WGVILGSAAIIGMPPFPLFLSKFFILLQLGGISvWLVLAVLLLLLLAASSFAIFL 426
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
108-385 1.02e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 57.29  E-value: 1.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLiLGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNI-YMCFFLLNLDFGFYVYI 186
Cdd:PRK12665 133 LFNLYVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMaDLAVRLDELPSGTRTAL 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 187 SMVL--AFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKlGSTFNIMIVGVSLLGGLLVSLI 264
Cdd:PRK12665 212 FAVLlvAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFP-GGGLDTLLMVVALLTMVVGILG 290
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 265 CLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSM 344
Cdd:PRK12665 291 AIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLL 370
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 827046112 345 GLwWFLLCSANMAA-PPTLNLLGEISLLN-GIISWSWISLFVV 385
Cdd:PRK12665 371 AV-LFFVPALNLGGiPPFSGFIGKVALLEaGAEDGTWLAWALV 412
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
109-392 3.57e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 55.89  E-value: 3.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 109 FMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFtlntLNIYMCFFLLNLDFGF--YVYI 186
Cdd:PRK08667 134 FSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFI----QTGSFELSPLGASAGIlsLVFL 209
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 187 SMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGGLLVSLICL 266
Cdd:PRK08667 210 LLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYAL 289
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 267 RQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLM-----------IAHGLCSSGMFCLANISYERVGSRSLLINK 335
Cdd:PRK08667 290 KEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMG 369
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 827046112 336 GLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGII-----SWSWISLFVVCLLSFFS 392
Cdd:PRK08667 370 GLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFqsfsvADPLIKILLFSVLAIFA 431
PRK12646 PRK12646
DUF4040 family protein;
110-363 5.97e-08

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 55.15  E-value: 5.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 110 MFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYMCFFLLNLDFGFYVYISMV 189
Cdd:PRK12646 134 LMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILGQADHIKNHGLFIPMI 213
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 190 LAFLV----KMPMFIFHLWLPKAhVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGGLLVSLIC 265
Cdd:PRK12646 214 FMFLLgaftKSAQFPFHIWLPRA-MAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYIVTFVGLITMLFGSITA 292
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 266 LRQVDLKSLIAYSSVAHMGIVL------GGLCTMTYWGLSGSYSL--------MIAHGLCSSGMFCLANISYERVGSRSL 331
Cdd:PRK12646 293 LKQWDLKGILAYSTISQLGMIMamvgigGGYAQHQQDAIASIYVFvlfaalfhLMNHAIFKCALFMGVGIIDHEAGTRDI 372
                        250       260       270
                 ....*....|....*....|....*....|..
gi 827046112 332 LINKGLMNLMPSMGLwWFLLCSANMAAPPTLN 363
Cdd:PRK12646 373 RILSGMRQLFPKMNL-VMTIAALSMAGVPFLN 403
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
175-393 1.37e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 53.78  E-value: 1.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 175 LLNLDFGFyvyisMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFK-LGSTF--NIMIV 251
Cdd:PRK06458 212 LMKLAFVF-----LLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAaIGSDFpgRLLLI 286
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 252 GVSLLGGLLVSLIcLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSL 331
Cdd:PRK06458 287 FGLLSVLVAAFFL-LRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDI 365
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 827046112 332 LINKGLMNLMPSMGlWWFLLCSANMA-APPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSA 393
Cdd:PRK06458 366 NVIRGLLKVSPLTG-WGLMLGALAIAgMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLA 427
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
105-413 6.73e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 51.49  E-value: 6.73e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 105 TSSLFMFYLFFESSLIPTFFLILgWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNiyMCFFLLNLD----F 180
Cdd:PRK12663 127 TGDLFNLYVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLN--MAHIAMRLNdmgdT 203
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 181 GFYVYISMV--LAFLVKMPMFIFHlWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIF----KLGSTfniMIVGVS 254
Cdd:PRK12663 204 ATLTTIALLflLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFpqerELLHP---LLATMA 279
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 255 LLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLIN 334
Cdd:PRK12663 280 AITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYL 359
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 335 KGLMNLMPSMGLWWFLLCSANMAAPPTLNLLGEISLLNGII-SWSWISLFVVCLLSFFSaaytlyLYSFsqhGKIFSCVY 413
Cdd:PRK12663 360 GGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALdNGAYILLALMLITSLIT------MYSL---FRIFFLAY 430
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-83 8.84e-07

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 47.52  E-value: 8.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112    1 MLKFIFFIVFMTPLCFFINYWYILSFLFLGSFI------YLVFGYLNFFVCNIDYYFCSDVLSYGFILLSFWICCLMFLS 74
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLlallslLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80

                  ....*....
gi 827046112   75 SGSVYNHYN 83
Cdd:pfam01059  81 SQKHLKSEP 89
PRK12650 PRK12650
DUF4040 family protein;
189-371 1.29e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 50.81  E-value: 1.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 189 VLAFLVKMPMFI------FHLWLPKAHVEA-PV-----AGSMILAGVLLKLggygllrVFSLIFKLGSTFNIMIVGVSLL 256
Cdd:PRK12650 209 VVAVLIAVAAFTksaqfpFHFWLPEAMAAItPVsaflhAAAVVKAGIYLLL-------RFSPVFHDVAVWNWLLIIVGMI 281
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 257 GGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKG 336
Cdd:PRK12650 282 TALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGS 361
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 827046112 337 LMNLMPsMGLWWFLLCSANMAA-PPTLNLLGEISLL 371
Cdd:PRK12650 362 LWRRMP-FTFVSVTIAALSMAAvPPLFGFVSKEGML 396
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
108-316 2.92e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.61  E-value: 2.92e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLILgWGYQPERMQAGIYLLFYTLFASLpLLISIFNFYFTLNTLNIY-MCFFLLN---LDFGFY 183
Cdd:PRK08668 120 LLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAIGAYA-MLYAIFLIYAKTGTFDFAdISQGLINdtsTGFALI 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 184 VYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILA---------GVLLKLGGYGLLRVFS--LIFKLGSTFNIMIVG 252
Cdd:PRK08668 198 VFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgayGFLLVLYVLPGTKLFSefGTYRGVPLFNYILAW 277
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 827046112 253 VSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMF 316
Cdd:PRK08668 278 LGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
187-346 6.40e-06

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 48.22  E-value: 6.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 187 SMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNI--MIVGVSLLGGLLVSLI 264
Cdd:PRK08377 211 LLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVlkLVIIMATLTVFFAELS 290
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 265 CLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLMPSM 344
Cdd:PRK08377 291 ALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLT 370

                 ..
gi 827046112 345 GL 346
Cdd:PRK08377 371 AL 372
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
105-362 3.91e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 45.71  E-value: 3.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 105 TSSLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFyTLFASLPLLISIFNFYFTLNTLNI-YMCFFLLNLDFG-- 181
Cdd:PRK07691 127 TGDIFNLFVFFEVMLMASYVLIVIGGTKIQLRESIKYVLI-NVVSSAFFVVAVAILYSVVGTLNMaDISVKIAELSAGqt 205
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 182 ---FYVYISMVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGG 258
Cdd:PRK07691 206 gliTVVAILFLFVFATKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHYLILILALLT 285
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 259 LLVSLI-CLRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMFCLANISYERVGSRSLLINKGL 337
Cdd:PRK07691 286 IIFGVIgAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGL 365
                        250       260
                 ....*....|....*....|....*
gi 827046112 338 MNLMPSMGlWWFLLCSANMAAPPTL 362
Cdd:PRK07691 366 IKRYPVLG-WMFFIAALSLAGIPPL 389
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
108-399 7.69e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.94  E-value: 7.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 108 LFMFYLFFESSLIPTFFLIlGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYMcffLLNLDFGFYVYIs 187
Cdd:PRK07234 116 LISLYVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSG---LATADPEAFALI- 190
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 188 mVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFKLGstfnIMIVGVSLLGGLLVSLICLR 267
Cdd:PRK07234 191 -ALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLD----LIVRIFGVGTALLGVLFALL 265
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 268 QVDLKSLIAYSSVAHMGIVLGGLCTmtywglSGSYSLmiAHGLCSSGMFCLANISYERVgsrslliNKGLMNLMPSMGLW 347
Cdd:PRK07234 266 EKDLKRMLAFSTISQLGFILAAPLV------GGLYAL--AHGLVKSTLFLCAGALPSRN-------FTELISQMLGIGKW 330
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 827046112 348 WFLL--CSANMAAPPTLNLLGEISLLNGIISWSWISLFVVCLLSFFSAAYTLYL 399
Cdd:PRK07234 331 IPLTmaSFSIAGFPLLAGFVSKVLTLKNLLPWQAIALNLAAVGTAASFWKFIFL 384
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
266-398 1.07e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 41.45  E-value: 1.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 266 LRQVDLKSLIAYSSVAHMG--IVLGGLCT--MTYWGLsgsySLMIAHGLCSSGMFCLANISYERVGSRSLLINKGLMNLM 341
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGflTVLVGIGTrdAALAGL----AMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQ 361
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 827046112 342 PSMgLWWFLLCSANMAA-PPTLNLLGEISLLNGII------SWSWISLFVVCLLSFFSAAYTLY 398
Cdd:PRK12644 362 PVL-AVVAALAAASMAGlPPLLGFVAKEAALEAVLhdgalgPAGPVVLAGIVLGSILTVAYSLR 424
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
136-316 2.22e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 40.23  E-value: 2.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 136 MQAGIYL----LFYTLFASLPLLISIFNFyfTLNTLNIymcffllNLDFGFYVYISMVLAFLVKMPMFIFHLWLPKAHVE 211
Cdd:MTH00198 258 MSSGFYLfgcaLYFGFTGNEGMLGTILSA--TLETTNI-------ELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEG 328
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 212 APVAGSMILAGVLLKLggygllrVFSLIFKLGSTFNIMIVGVSLLGGLLVSLiCLRQVDLKSLIAYSSVAHMGIVLGGLC 291
Cdd:MTH00198 329 APTPTTALIAIIPKFT-------VYILLTSLVITSKLLLSVAIISLVVGAFG-ALNQTRIKRLLAYSGIGHIGFILIGVS 400
                        170       180
                 ....*....|....*....|....*
gi 827046112 292 TMTYWGLSGSYSLMIAHGLCSSGMF 316
Cdd:MTH00198 401 AGTYESLQASWTYAVTYLVSALASF 425
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
106-388 2.35e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 40.34  E-value: 2.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 106 SSLFMFYLFFESSLIPTFFLIlGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYmCFFLLNLDFGFYVY 185
Cdd:PRK06525 133 STLLGLLLFFEITGLCSWALI-SYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALS-ALSGLHGSLKYLVF 210
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 186 ISMVLAFLVKMPMFIFHLWLPKAhVEAPVAGSMIL-AGVLLKLGGYGLLRVFSLIFKLGSTFNIMIVGVSLLGGLLVSLI 264
Cdd:PRK06525 211 LGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLM 289
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 265 CLRQVDLKSLIAYSSVAHMGIVLGGLCTMTY---WGLSGSYSLMIAHGLCSSGMFCLAN-ISYErVGSRSLLINKGLMNL 340
Cdd:PRK06525 290 YLPQQDMKRLLAYSTITQLGYMFFGLSLAILgsrLALEGSIAYIFNHAFAKSLFFLVAGaLSYS-CGTRLLPRLRGVLKK 368
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 827046112 341 MPSMGLWWFLLCSANMAAPPTLNLLGEISLLNG-----IISWSWISLFVVCLL 388
Cdd:PRK06525 369 LPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAgfelsVEYWILLPAMVLLLI 421
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
188-316 2.58e-03

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 40.19  E-value: 2.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 188 MVLAFLVKMPMFIFHLWLPKAHVEAPVAGSMILAGVLLKLGGYGLLRVFSLIFK-LGSTFNIMIVGVSLLGGLLVSLICL 266
Cdd:PRK05777 210 LLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLLVVAFGgLSEDWQQVLAIIAIASMLVGNLAAL 289
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 827046112 267 RQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMF 316
Cdd:PRK05777 290 SQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
266-331 2.67e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 40.10  E-value: 2.67e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 827046112 266 LRQVDLKSLIAYSSVAHMGIVLGGLCTMTYWGLSGSYSLMIAHGLCSSGMF-CLANISYERVGSRSL 331
Cdd:COG1007  288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLSRKGGEAEEI 354
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
107-400 8.57e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.59  E-value: 8.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 107 SLFMFYLFFESSLIPTFFLILGWGYQPERMQAGIYLLFYTLFASLPLLISIFNFYFTLNTLNIYMCFFLLNLDFGFYVYI 186
Cdd:COG1009  132 NLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILSSPLLT 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 187 SMVLAFLV----KMPMFIFHLWLPKAhVEAP-------------VAGSMILAgvllklggygllrVFSLIFKLGSTFNIM 249
Cdd:COG1009  212 LILLLLLLgafgKSAQFPLHFWLPDA-MEGPtpvsallhaatmvKAGVYLLA-------------RLSPLFALSPVWLTV 277
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 827046112 250 IVGVSLLGGLLVSLICLRQVDLKSLIAYSSVAHMGIVLGGLctmtywGLsGSYS----LMIAHGLCSSGMFCLANISYER 325
Cdd:COG1009  278 VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL------GV-GAYVaalfHLLTHAFFKALLFLGAGSVIHA 350
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 827046112 326 VGSRSLLINKGLMNLMPSMGlWWFLLCSANMAA-PPTLNLLGEISLLNGII---SWSWISLFVVCLLSFFSAAYTLYLY 400
Cdd:COG1009  351 TGTRDIRKMGGLRKKMPITA-ITFLIGALSLAGiPPFAGFFSKEAILEAALeagGLGPLLLAVALLGAFLTAFYSFRLF 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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