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Conserved domains on  [gi|902686285|ref|YP_009158941|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Eozapus setchuanus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 5.53e-142

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 405.77  E-value: 5.53e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   1 MKIIASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTL 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  81 SGQWTPLLPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNNFIMLSTGIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 161 SIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPIL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 241 ITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMKWQYESP 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 902686285 321 NTLTFLPTLTILSTLTLPIMPSLFTLN 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 5.53e-142

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 405.77  E-value: 5.53e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   1 MKIIASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTL 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  81 SGQWTPLLPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNNFIMLSTGIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 161 SIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPIL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 241 ITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMKWQYESP 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 902686285 321 NTLTFLPTLTILSTLTLPIMPSLFTLN 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-225 3.56e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 96.72  E-value: 3.56e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   7 FSILFTVILGTIITISSSHLLLMWAGLELSMLAV-IPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSGqwT 85
Cdd:COG1007  105 YALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATG--S 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  86 PLLPENELTTTLMTTAMLM--------------KLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQL-----A 146
Cdd:COG1007  183 LNLAGIAAALAAGGANSPLlllglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafP 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 147 PMVNNFIMLSTGI--LSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTM----TLINLIIYIMLTISMFLTIN 220
Cdd:COG1007  263 GLAADWQLLLAVLavLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIL 342


                 ....*
gi 902686285 221 VNSNH 225
Cdd:COG1007  343 LLSRK 347
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-236 5.21e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.22  E-value: 5.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   23 SSHLLLMWAGLELSMLAVIP-ILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSG-----------QWTPLLPE 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   91 NELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLL-TWQKLAPISILYQLAPM------VNNFIMLStGILSII 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYlpsspfIQQILLIL-AIISML 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 902686285  164 LGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNN 236
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNI 232
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.51e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.38  E-value: 1.51e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   14 ILGTIITISSSHLLLMWAGLELSMLAV-IPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSG---------Q 83
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGslnfedlllF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   84 WTPLLPENELTTT---LMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQL-------APMVNNFI 153
Cdd:TIGR01770 192 LSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  154 MLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTI----------SMFLTINVNS 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYAlmslgafgvlSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 902686285  224 NHTILSLSHSWNNSPILITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLI 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 5.53e-142

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 405.77  E-value: 5.53e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   1 MKIIASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTL 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  81 SGQWTPLLPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNNFIMLSTGIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 161 SIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPIL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 241 ITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMKWQYESP 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 902686285 321 NTLTFLPTLTILSTLTLPIMPSLFTLN 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.69e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 299.82  E-value: 2.69e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   1 MKIIASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTL 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  81 SGQWTPLLPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNNFIMLSTGIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 161 SIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPIL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 241 ITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMKWQYeSP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KP 319

                        330       340
                 ....*....|....*....|....*.
gi 902686285 321 NTLTFLPTLTILSTLTLPIMPSLFTL 346
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 7-346 5.46e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 288.63  E-value: 5.46e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   7 FSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSGQWTP 86
Cdd:MTH00135   7 TILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  87 LLPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMvNNFIMLSTGILSIILGG 166
Cdd:MTH00135  87 QQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 167 WGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPILITSSLI 246
Cdd:MTH00135 166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 247 ILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMKWQYESPNTLTFL 326
Cdd:MTH00135 246 ILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPL 325

                        330       340
                 ....*....|....*....|
gi 902686285 327 PTLTILSTLTLPIMPSLFTL 346
Cdd:MTH00135 326 AISTTATLMLLPLTPAILAL 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 8.12e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 282.97  E-value: 8.12e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   1 MKIIASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTL 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  81 SGQWTPLLPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNNFIMLSTGIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 161 SIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPIL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 241 ITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMKWQYeSP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319

                        330       340
                 ....*....|....*....|....*.
gi 902686285 321 NTLTFLPTLTILSTLTLPIMPSLFTL 346
Cdd:MTH00070 320 KTNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 9-315 3.71e-74

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 232.94  E-value: 3.71e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   9 ILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSGQWTPLL 88
Cdd:MTH00200   9 FILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISE 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  89 PENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNNFIMLSTGILSIILGGWG 168
Cdd:MTH00200  89 MLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWG 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 169 GLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPILITSSLIIL 248
Cdd:MTH00200 169 GLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTL 248

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 902686285 249 LSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMKW 315
Cdd:MTH00200 249 LSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSW 315
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-325 9.04e-72

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 226.74  E-value: 9.04e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   1 MKIIASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTL 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  81 SGQWTPLLPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNNFIMLSTGIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 161 SIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPIL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 241 ITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMKWQYESP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320


                 ....*
gi 902686285 321 NTLTF 325
Cdd:MTH00041 321 ITVYG 325
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-315 1.14e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 166.21  E-value: 1.14e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   1 MKIIASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTL 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  81 SGQWtpllpeneLTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVN-NFIMLSTGI 159
Cdd:MTH00144  81 SFSW--------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWlAYLLCVISV 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 160 LSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSwNNSPI 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYK 231

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 902686285 240 LITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMKW 315
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-314 3.18e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 154.98  E-value: 3.18e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   1 MKIIASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTL 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  81 SGQWtpllpeNELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQlapMVNNFIMLSTGIL 160
Cdd:MTH00160  82 LMLF------NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSY---LINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 161 SIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPIL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 902686285 241 ITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSSSLTLFPTSNNMKMK 314
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK 306
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-300 1.16e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 150.70  E-value: 1.16e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  12 TVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSGQWTPLLPen 91
Cdd:MTH00011  14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKNITA-- 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  92 elttTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNNFIMLSTGILSIILGGWGGLN 171
Cdd:MTH00011  92 ----LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 172 QTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPILITSSLIILLSL 251
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 902686285 252 GGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSS 300
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNF 296
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-300 2.56e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 128.25  E-value: 2.56e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   7 FSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLsgqwtp 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------ 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  87 lLPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPmvNNFIMLSTGILSIILGG 166
Cdd:MTH00197  75 -LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 167 WGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNNSPILITSSLI 246
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 902686285 247 ILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLIYSS 300
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-219 1.68e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 106.25  E-value: 1.68e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  13 VILGTIITISSSHLLLMWAGLELSMLAV-IPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSG----QWTPL 87
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGetsiQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  88 LPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNnfIMLSTGILSIILGGW 167
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 902686285 168 GGLNQTQLRKIMAYSSIAHMGWMI--VAMTYNPTM--TLINLIIYIMLTISMFLTI 219
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILfgVAIGSFESIqaSLIYMIIYVIMSICSFSII 319
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-297 1.43e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.42  E-value: 1.43e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  13 VILGTIITISSSHLLLMWAGLELSMLAV-IPILMKNHNPRSTEAATKYFLTQATASMIFLLGI-------------LINF 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  79 TLSGQWTPLLPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAPMVNNFIMLstG 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIG--G 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 159 ILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNP----TMTLINLIIYIMLTISMF---LTINVNSNhTILSLS 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKN-LIIEFS 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 902686285 232 HSWNNSPILITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLI 297
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-225 3.56e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 96.72  E-value: 3.56e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   7 FSILFTVILGTIITISSSHLLLMWAGLELSMLAV-IPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSGqwT 85
Cdd:COG1007  105 YALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATG--S 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  86 PLLPENELTTTLMTTAMLM--------------KLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQL-----A 146
Cdd:COG1007  183 LNLAGIAAALAAGGANSPLlllglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafP 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 147 PMVNNFIMLSTGI--LSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTM----TLINLIIYIMLTISMFLTIN 220
Cdd:COG1007  263 GLAADWQLLLAVLavLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIL 342


                 ....*
gi 902686285 221 VNSNH 225
Cdd:COG1007  343 LLSRK 347
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-236 5.21e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.22  E-value: 5.21e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   23 SSHLLLMWAGLELSMLAVIP-ILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSG-----------QWTPLLPE 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlsfdelskalTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   91 NELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLL-TWQKLAPISILYQLAPM------VNNFIMLStGILSII 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYlpsspfIQQILLIL-AIISML 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 902686285  164 LGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFLTINVNSNHTILSLSHSWNN 236
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNI 232
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-219 1.67e-19

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 89.11  E-value: 1.67e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   9 ILFTViLGTIITISSSHLLLMWAGLELSMLAV-IPILMKNHNPRSTEAATKYFLTQATASMIFLLGIL--------INFT 79
Cdd:PRK05777 109 VLFAL-LGMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSllygatgsLSFA 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  80 LSGQWTPLLPENELTTTLMTTAMLM----KLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILY--------QLAP 147
Cdd:PRK05777 188 GIAKALADGSGNSLLLLFGLVFLLVglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvafgGLSE 267

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 902686285 148 MVNNFIMLSTgILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYimLTISMFLTI 219
Cdd:PRK05777 268 DWQQVLAIIA-IASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFY--LLAYLFMTL 336
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 1.51e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.38  E-value: 1.51e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   14 ILGTIITISSSHLLLMWAGLELSMLAV-IPILMKNHNPRSTEAATKYFLTQATASMIFLLGILINFTLSG---------Q 83
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGslnfedlllF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   84 WTPLLPENELTTT---LMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQL-------APMVNNFI 153
Cdd:TIGR01770 192 LSNGMLNISLLLLgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  154 MLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTI----------SMFLTINVNS 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYAlmslgafgvlSLLRSYKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 902686285  224 NHTILSLSHSWNNSPILITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLRLI 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 5-219 2.06e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.12  E-value: 2.06e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   5 ASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRST---------EAATKYFLTQATASMIFLLGIL 75
Cdd:MTH00198 189 SGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCA 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  76 INFTLSGQWTPL--------------LPENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISI 141
Cdd:MTH00198 269 LYFGFTGNEGMLgtilsatlettnieLRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYIL 348

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 142 LYQLapMVNNFIMLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLIN----LIIYIMLTISMFL 217
Cdd:MTH00198 349 LTSL--VITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASFT 426


                 ..
gi 902686285 218 TI 219
Cdd:MTH00198 427 VI 428
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
9-217 7.47e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 69.31  E-value: 7.47e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   9 ILFTVILGTIITISSSHLLLMWAGLElsMLAVIPILMKNH---NPRSTEAATKYFLTQATASMIFLLGILINFTLSGQWT 85
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGST 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  86 PL------LPENELTTTLMTTAMLM-----KLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLA----PISILYQLAPMVN 150
Cdd:PRK02504 193 QLsaialaLITSPSLGLALALVFVIagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFD 272

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 151 N---FIMLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIMLTISMFL 217
Cdd:PRK02504 273 EqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEAGYASMVFYLLAYLFMNL 342
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 4-194 2.90e-10

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 61.11  E-value: 2.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285    4 IASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRsteAATKYFLTQATASMIFLLGILINFTLSGQ 83
Cdd:TIGR01972 109 YALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIY---AAMKFFLYTLAGSLLMLLAILGLYFLGGG 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   84 WTPLLPENELTTTLMTTAMLM---------KLGLAPFHFWVPEV-----TQGIPLMSGMLLltwqKLAP---ISILYQLA 146
Cdd:TIGR01972 186 TFDLLELLNLPLPFGVQTWLFlaffiafavKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTygfLRFNLPLF 261

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 902686285  147 PMVNNF---IMLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAM 194
Cdd:TIGR01972 262 PDASLYfapVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI 312
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 7-301 2.96e-10

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 60.93  E-value: 2.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   7 FSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILI--------NF 78
Cdd:COG0651  110 YPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLlygatgtlNM 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  79 TLSGQWTPLLPENELTTTLMTTAM--LMKLGLAPFHFWVPEVTQGIP-----LMSGMLLltwqKLAPISIL--------Y 143
Cdd:COG0651  190 ADLAARLAELDPGLLLAAFALLLVgfGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLT----KVGVYAILrvltllfgA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 144 QLAPMVNNFIMLsTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYI----MLTISMFLT- 218
Cdd:COG0651  266 DPALFLGTLLLV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAa 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 219 ---INVNSNHTILSLSHSWNNSPILITSSLIILLSLGGLPPLSGFIPKWLIMQEMITNYNIHTSLLMATAALLNLFFYLR 295
Cdd:COG0651  345 gaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVR 424


                 ....*.
gi 902686285 296 LIYSSS 301
Cdd:COG0651  425 IFGRAQ 430
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-194 9.54e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 53.55  E-value: 9.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  55 AATKYFLTQATASMIFLLGILINFTLSGQWTPLLPENELTTTLMTTAMLM----------KLGLAPFHFWVPEV-----T 119
Cdd:COG1008  162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQLLLflaffiafavKVPMFPFHTWLPDAhveapT 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 120 QGIPLMSGMLLltwqKLAP---ISILYQLAPMVNNF---IMLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVA 193
Cdd:COG1008  242 AGSVLLAGVLL----KMGGyglLRFALPLFPEASAYfapLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLG 317


                 .
gi 902686285 194 M 194
Cdd:COG1008  318 I 318
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-217 1.64e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 52.70  E-value: 1.64e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   1 MKIIASFSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPI--LMKNhNPRSTEAATKYFLTQATASMIFLLGILINF 78
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLsgYTKK-DVRSNEATMKYLLMGGASSSILVYGFSWLY 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  79 TLSGQWTPL------LPENELTTTLMTTAMLM--------KLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLA----PIS 140
Cdd:CHL00049 187 GLSGGEIELqeivngLINTQMYNSPGISIALIfitvgigfKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAasalATR 266

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 141 ILYQLAPMVNN---FIMLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAM-TYNPTMTLINLIIYIMLTISMF 216
Cdd:CHL00049 267 IFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIiVGDSNDGYASMITYMLFYIFMN 346


                 .
gi 902686285 217 L 217
Cdd:CHL00049 347 L 347
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 7-194 8.50e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.52  E-value: 8.50e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   7 FSILFTVILGTI-ITISSSHLLLMWAGLELSML---AVIPILMKNHNprsTEAATKYFLTQATASMIFLLGILINFTLSG 82
Cdd:PRK08676 104 FYLGFNLLLSVItFAFFSDNLALFWIFAELTTVfsaMLIAILSAREN---IDAALKYIFIASTAMIFAFIGLIFLFSLTR 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  83 Q--------WTPLLPENELTTTLMTTAMLM--------KLGLAPFHFWVPEVTQGIP-----LMSGMLL----LTWQKLA 137
Cdd:PRK08676 181 QalgtgtlnWTELAAHASLLSPSVLGASFLfifigflaKSGLVPFHTWLPAAYAKAPsvvsaLLSGTVLnigiYGILRLS 260

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 902686285 138 PISILYQLAPMVNNfIMLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAM 194
Cdd:PRK08676 261 ALLRQSGAAEQFSN-VLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 47-194 4.60e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 48.22  E-value: 4.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  47 NHNPRSTEAATKYFLTQATASMIFLLGILINFTLSG--QWTPLLPENELTTTLMTTAMLM---------KLGLAPFHFWV 115
Cdd:COG1009  155 YEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGtlNFSELLAAAPTILSSPLLTLILlllllgafgKSAQFPLHFWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 116 PE-----------------VTQGIPLMSgmllltwqKLAPIsilYQLAPMVNNFIMLsTGILSIILGGWGGLNQTQLRKI 178
Cdd:COG1009  235 PDamegptpvsallhaatmVKAGVYLLA--------RLSPL---FALSPVWLTVVAI-IGAITALFAALIALAQTDIKRV 302

                        170
                 ....*....|....*.
gi 902686285 179 MAYSSIAHMGWMIVAM 194
Cdd:COG1009  303 LAYSTVSQLGYMFLAL 318
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-325 4.78e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 43.02  E-value: 4.78e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 902686285  291 FFYLRLIYSSSLTLFPTSNNMKMKWQYESPNTLTF 325
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLL 35
PRK12650 PRK12650
DUF4040 family protein;
110-238 3.91e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.42  E-value: 3.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 110 PFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQLAP-----MVNNFIMLSTGILSIILGGWGGLNQTQLRKIMAYSSI 184
Cdd:PRK12650 226 PFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPvfhdvAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTV 305

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 902686285 185 AHMGWmIVAM-----TYNPTMTLINLIIYIMLTISMFLTINVNSNHT----ILSLSHSWNNSP 238
Cdd:PRK12650 306 SQLGW-IVATigvgtPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAgtrdIRRLGSLWRRMP 367
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-194 1.47e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 43.55  E-value: 1.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   7 FSILFTVILGTIITISSSHLLLMWAGLELSMLAVIPIL-MKNHNPRSTEAATKYFLTQATASMIFLLGILInftLSGQWT 85
Cdd:PRK08376 124 YTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVaFRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYG 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  86 PL--------LPENELTT-----TLMTTAMLMKLGLAPFHFWVPEVTQGIPL-MSGMLLLTWQK--LAPISILYQL-APM 148
Cdd:PRK08376 201 TLnmaylavkMSENPTVVakialALFIAGLAMKSGAVPVHMWLPDAYPAAPSsISAMLLVIKQAglYALARVLFSIyGPA 280

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 902686285 149 VNNF----IMLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVAM 194
Cdd:PRK08376 281 INLAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGL 330
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 3-205 3.06e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.41  E-value: 3.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285   3 IIASFSILFTV-ILGTIITISSSHLLLMWaglELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFL-LGILINFTL 80
Cdd:PRK08667 112 LLSALTALFILsMLGVVASANTFSFLFFW---EIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLmLGIIVLFIQ 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  81 SGQWT-PLL----PENELTTTLMTTAMLMKLGLAPFHFWVPEVTQGIP-----LMSGMLLLTWQKLAPISILYQLAP-MV 149
Cdd:PRK08667 189 TGSFElSPLgasaGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSGVMLKVAVYGLVRFLMDVLSPeLW 268

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 902686285 150 NNFIMLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMG--------WMIVAMTYNPTMTLINL 205
Cdd:PRK08667 269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLDTLALLAL 332
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 105-211 1.20e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.68  E-value: 1.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 105 KLGLAPFHFWVPEV-----TQGIPLMSGMLL---------LTWQKLaPISIlYQLAPMVnnfimLSTGILSIILGGWGGL 170
Cdd:MTH00226 243 KIPIFPFHIWLPKAhveapVAGSVLLAGILLklggyglvrLSWPIL-PLGA-QNLAPAV-----IAMGIVGIVYGSFATC 315

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 902686285 171 NQTQLRKIMAYSSIAHMGWMIVAMTYNPTMTLINlIIYIML 211
Cdd:MTH00226 316 RQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTG-SIFIML 355
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 10-193 1.25e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 40.68  E-value: 1.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  10 LFTVILgtiiTISSSHLLLMWAGLELSMLAVIPILMKNHNPRSTEAATKYFL------TQATASMIFLLGILINFTLSGQ 83
Cdd:PRK06458 118 LFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGE 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  84 ----WTPLLPENELTTTLMTTAMLM--------KLGLAPFHFWVPEVTQGIP-----LMSGMLL-------LTWQKLAPI 139
Cdd:PRK06458 194 mailWTELLKHASLLDPTLMKLAFVflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLnvalyavLRYYILIDA 273

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 902686285 140 SILYQLAPMvnnfIMLSTGILSIILGGWGGLNQTQLRKIMAYSSIAHMGWMIVA 193
Cdd:PRK06458 274 AIGSDFPGR----LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFA 323
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-210 2.02e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 39.86  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285  33 LELSMLAVIPILMKNHNPRSTEAATKYFLTQATASMIFLLGILI--------NFTLSGQWTPLLPENELTTTLMTTAMLM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLlygvtgtlNMADLAGALAENPTVVTAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 105 KLGLAPFHFWVPEVTQGIPLMSGMLLLTWQKLAPISILYQL----------APMVNNFIMLSTGILSIILGGWGGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIyftvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 902686285 175 LRKIMAYSSIAHMGWMIVAMTYNPTMTLINLIIYIM 210
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLL 330
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 105-211 2.13e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 39.65  E-value: 2.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 105 KLGLAPFHFWVPEV-----TQGIPLMSGMLL---------LTWqKLAPISILYqLAPMVnnfimLSTGILSIILGGWGGL 170
Cdd:MTH00217 219 KIPKIPFHIWLPQAhveapVAGSVILAGVLLklggygfirFSW-PLLPEASEY-FSPLI-----QTLSLLAIIYGSLTTC 291

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 902686285 171 NQTQLRKIMAYSSIAHMGWMIVAMtYNPTMTLINLIIYIML 211
Cdd:MTH00217 292 RQVDLKRIIAYSSVAHMGLVTLGI-FSHTIQGLVAAIFLML 331
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
110-194 4.00e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.24  E-value: 4.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 902686285 110 PFHFWVPEVTQGIPLMS-----------GMLLLTwqKLAPisiLYQLAPMVNNFIMLsTGILSIILGGWGGLNQTQLRKI 178
Cdd:PRK07376 245 PLHVWLPDAMEGPTPISalihaatmvaaGVFLVA--RMYP---VFEQFPAVMTVIAW-TGAITAFLGASIALTQNDIKKG 318

                         90
                 ....*....|....*.
gi 902686285 179 MAYSSIAHMGWMIVAM 194
Cdd:PRK07376 319 LAYSTISQLGYMVMAM 334
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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