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Conserved domains on  [gi|927372600|ref|YP_009164869|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Taractichthys steindachneri]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009582)

NADH dehydrogenase subunit 6 (mitochondrion) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 8.31e-78

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 177196  Cd Length: 173  Bit Score: 229.26  E-value: 8.31e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600   1 MTYMMCLLLFGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600  81 SWGSPAVMMYMAVYGVGAMFACGLFWGGWYEASWASADGVGEFFVFRGDTGGVALMYSAGGGMLVTSAWVLLLTLFVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 927372600 161 LTRGMGRGTVRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 8.31e-78

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 229.26  E-value: 8.31e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600   1 MTYMMCLLLFGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600  81 SWGSPAVMMYMAVYGVGAMFACGLFWGGWYEASWASADGVGEFFVFRGDTGGVALMYSAGGGMLVTSAWVLLLTLFVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 927372600 161 LTRGMGRGTVRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
18-122 3.54e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.20  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600   18 AVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPESWGSPAVMMYMAVYGVG 97
Cdd:pfam00499   2 GVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGLL 81

                          90       100
                  ....*....|....*....|....*
gi 927372600   98 AMFACGLFWGGWYEASWASADGVGE 122
Cdd:pfam00499  82 LLALLLLVLLSASLTPAAAAAAPDV 106
 
Name Accession Description Interval E-value
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-173 8.31e-78

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 229.26  E-value: 8.31e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600   1 MTYMMCLLLFGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600  81 SWGSPAVMMYMAVYGVGAMFACGLFWGGWYEASWASADGVGEFFVFRGDTGGVALMYSAGGGMLVTSAWVLLLTLFVVLE 160
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 927372600 161 LTRGMGRGTVRAV 173
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-173 2.01e-48

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 154.62  E-value: 2.01e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600   1 MTYMMCLLLFGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600  81 SWGSPAVMMYMAVYGVGaMFACGLFWGGWYEASWASADGVGEFFVFRGDTGGVALMYSAGGGMLVTSAWVLLLTLFVVLE 160
Cdd:MTH00065  81 AWGSWSVLVYVLFYLLL-LIVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLE 159

                        170
                 ....*....|...
gi 927372600 161 LTRGMGRGTVRAV 173
Cdd:MTH00065 160 VTRGLSRGSLRAV 172
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-173 3.46e-34

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 118.31  E-value: 3.46e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600   1 MTYMMCLLLFGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600  81 SWGSPAVMMYMAVYGVGAMFACGLFWGGW-YEASWASADGVGEFFVFRGDTGGVALMYSAGGGMLVTSAWVLLLTLFVVL 159
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGLWgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 927372600 160 ELTRGMGRGTVRAV 173
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-173 1.90e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 100.83  E-value: 1.90e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600   1 MTYMMCLLLFGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600  81 SWGSPAVMMYMAVYGVGAMFACGLFWGGWYEASWASADGVGEFFVfrgdtGGVALMYSAGGGMLVTSAWVLLLTLFVVLE 160
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDEANNLDL-----SGVSDLYSRGFFLLLLGGVVLFLVLFVVLE 155

                        170
                 ....*....|...
gi 927372600 161 LTRGMGRGTVRAV 173
Cdd:MTH00214 156 LVRGLSRGALRVV 168
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-149 6.01e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 99.88  E-value: 6.01e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600   1 MTYMMCLLLFGLVLGLVAVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 927372600  81 SWGSPAVMMYMAVYGVGAMFACGLFWGGWYE----------ASWASADGVGeFFVFRGDTGGVALMYSAGGGMLVTSAW 149
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEvevvfnfnglGDWVIYDTGG-SGFFSEDAMGVAALYSYGTWLVVVTGW 159
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 24-79 1.62e-16

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 72.25  E-value: 1.62e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 927372600  24 SPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYP 79
Cdd:MTH00045  22 SPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYP 77
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
18-122 3.54e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.20  E-value: 3.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 927372600   18 AVASNPSPYFAALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPESWGSPAVMMYMAVYGVG 97
Cdd:pfam00499   2 GVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGLL 81

                          90       100
                  ....*....|....*....|....*
gi 927372600   98 AMFACGLFWGGWYEASWASADGVGE 122
Cdd:pfam00499  82 LLALLLLVLLSASLTPAAAAAAPDV 106
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 29-74 1.55e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 37.17  E-value: 1.55e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 927372600  29 ALGLVVVAGMGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALA 74
Cdd:MTH00152  27 GLVLLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLS 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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