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Conserved domains on  [gi|1812092688|ref|YP_009727263|]
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ribosomal protein S4 (chloroplast) [Psathyrostachys huashanica]

Protein Classification

30S ribosomal protein S4( domain architecture ID 11414071)

30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-201 1.83e-135

ribosomal protein S4; Reviewed


:

Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 377.25  E-value: 1.83e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688   1 MSRYRGPRLKKIRRLGALPGLTRKTPKSGSNLKKKFNSGKKEQYRIRLQEKQKLRFHYGLTERQLLRYVHIAGKAKRSTG 80
Cdd:CHL00113    1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGSTG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  81 QVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDPGKL 160
Cdd:CHL00113   81 QVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREEL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1812092688 161 PKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVEYYSRQT 201
Cdd:CHL00113  161 PNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-201 1.83e-135

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 377.25  E-value: 1.83e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688   1 MSRYRGPRLKKIRRLGALPGLTRKTPKSGSNLKKKFNSGKKEQYRIRLQEKQKLRFHYGLTERQLLRYVHIAGKAKRSTG 80
Cdd:CHL00113    1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGSTG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  81 QVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDPGKL 160
Cdd:CHL00113   81 QVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREEL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1812092688 161 PKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVEYYSRQT 201
Cdd:CHL00113  161 PNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-199 4.06e-75

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 224.57  E-value: 4.06e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688   1 MSRYRGPRLKKIRRLG-ALPGLTRKtpksgsnlKKKFN------------SGKKEQYRIRLQEKQKLRFHYGLTERQLLR 67
Cdd:COG0522     1 MARYTGPKCKLCRREGvKLFLKGER--------KCALErrpyppgqhgqrRKKLSDYGLQLREKQKLRRIYGVLEKQFRR 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  68 YVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGL 147
Cdd:COG0522    73 YFEEAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPR 152

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1812092688 148 VQNYIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVEYYSR 199
Cdd:COG0522   153 IKEALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-199 1.10e-68

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 208.31  E-value: 1.10e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688   3 RYRGPRLKKIRRLGA-LPGLTRKTPksgsnLKKKFNSG-------KKEQYRIRLQEKQKLRFHYGLTERQLLRYVHIAGK 74
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVnLFGKSRKLL-----LKRKYPPGqhgqrrkKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKK 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  75 AKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIAS 154
Cdd:TIGR01017  76 LKGNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLET 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1812092688 155 SDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVEYYSR 199
Cdd:TIGR01017 156 NGQRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 89-148 1.27e-17

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 73.44  E-value: 1.27e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  89 MRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLV 148
Cdd:cd00165     1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIV 60
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 89-136 2.05e-15

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 67.13  E-value: 2.05e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1812092688  89 MRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDII 136
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
89-144 1.07e-13

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 63.00  E-value: 1.07e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1812092688   89 MRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRS 144
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-201 1.83e-135

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 377.25  E-value: 1.83e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688   1 MSRYRGPRLKKIRRLGALPGLTRKTPKSGSNLKKKFNSGKKEQYRIRLQEKQKLRFHYGLTERQLLRYVHIAGKAKRSTG 80
Cdd:CHL00113    1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQSRSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAKGSTG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  81 QVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIASSDPGKL 160
Cdd:CHL00113   81 QVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSPREEL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1812092688 161 PKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVEYYSRQT 201
Cdd:CHL00113  161 PNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-199 2.09e-80

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 238.08  E-value: 2.09e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688   1 MSRYRGPRLKKIRRLG-ALPGLTRKTPKS-------GSNLKKKFNSgkkeQYRIRLQEKQKLRFHYGLTERQLLRYVHIA 72
Cdd:PRK05327    1 MARYTGPKCKLSRRLGvDLFKSGKRCLKRkyppgqhGQRRRKPKLS----DYGLQLREKQKLRRIYGVLEKQFRRYFKEA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  73 GKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYI 152
Cdd:PRK05327   77 ARRKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEAL 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1812092688 153 ASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVEYYSR 199
Cdd:PRK05327  157 ELAERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-199 4.06e-75

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 224.57  E-value: 4.06e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688   1 MSRYRGPRLKKIRRLG-ALPGLTRKtpksgsnlKKKFN------------SGKKEQYRIRLQEKQKLRFHYGLTERQLLR 67
Cdd:COG0522     1 MARYTGPKCKLCRREGvKLFLKGER--------KCALErrpyppgqhgqrRKKLSDYGLQLREKQKLRRIYGVLEKQFRR 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  68 YVHIAGKAKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGL 147
Cdd:COG0522    73 YFEEAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPR 152

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1812092688 148 VQNYIASSDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVEYYSR 199
Cdd:COG0522   153 IKEALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-199 1.10e-68

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 208.31  E-value: 1.10e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688   3 RYRGPRLKKIRRLGA-LPGLTRKTPksgsnLKKKFNSG-------KKEQYRIRLQEKQKLRFHYGLTERQLLRYVHIAGK 74
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVnLFGKSRKLL-----LKRKYPPGqhgqrrkKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKK 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  75 AKRSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLVQNYIAS 154
Cdd:TIGR01017  76 LKGNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLET 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1812092688 155 SDPGKLPKHLTIDTLEYKGLVNKILDRKWVGLKINELLVVEYYSR 199
Cdd:TIGR01017 156 NGQRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 89-148 1.27e-17

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 73.44  E-value: 1.27e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688  89 MRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRSKGLV 148
Cdd:cd00165     1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIV 60
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 89-136 2.05e-15

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 67.13  E-value: 2.05e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1812092688  89 MRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDII 136
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-88 3.85e-14

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 65.26  E-value: 3.85e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1812092688   3 RYRGPRLKKIRRLGALPGLTRKTPKSGSNLKKKFNSGKKE----------QYRIRLQEKQKLRFHYGLTERQLLRYVHIA 72
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVAQNRREYPKYPgqhgkirklsEYLLQLREKQKVRRKYGLLEKQLRKLYDMG 80

                          90
                  ....*....|....*.
gi 1812092688  73 GKAKRSTGQVLLQLLE 88
Cdd:pfam00163  81 LKLKGVTGENLLQLLE 96
S4 smart00363
S4 RNA-binding domain;
89-144 1.07e-13

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 63.00  E-value: 1.07e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1812092688   89 MRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSFRCKPRDIITTKDNQRS 144
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
rps4p PRK04051
30S ribosomal protein S4P; Validated
 85-128 4.97e-11

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 58.73  E-value: 4.97e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1812092688  85 QLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSF 128
Cdd:PRK04051   99 DILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSY 142
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 87-128 2.00e-10

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 57.05  E-value: 2.00e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1812092688  87 LEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSF 128
Cdd:TIGR01018 102 LERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSY 143
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 85-128 5.16e-09

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 53.60  E-value: 5.16e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1812092688  85 QLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSF 128
Cdd:PLN00189  105 NFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSF 148
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 86-128 9.45e-08

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 50.08  E-value: 9.45e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1812092688  86 LLEMRLDNILFRLGMASTIPGARQLVNHRHILVNGRIVNIPSF 128
Cdd:PTZ00155  104 LLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSF 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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