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Conserved domains on  [gi|1834970681|ref|YP_009767151|]
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Ycf1 (plastid) [Coulteria platyloba]

Protein Classification

TIC214/Ycf1 family protein( domain architecture ID 11414143)

TIC214/ycf1 family protein is a component of the chloroplast inner membrane protein translocon and forms a 1-MD complex together with Tic100, Tic56, and Tic20-I

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1792 0e+00

Ycf1; Provisional


:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2469.16  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681    8 LDNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681   85 GRPHTITVIALPYLLFLFFCNNHKHFLNYGSTNQNSMRNFSIQRIFLNNLLFQLLNLFILPSSMLVRLVNIYMFRCNNQF 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  165 LFLTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIKSNVLIRSNKYIMSELRNYM---FIIFLFITCLYYLGRTPSPIFIK 241
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMariFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  242 K---------RGEIDNKIDV--ERTSKTKVTKKEQNKSTEEYLSPSVFSEEREESYKIDEREE----------KEIFRLE 300
Cdd:CHL00204   241 KlketseteeRVESEEETDVeiETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEirvngkekikKDLFWFE 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  301 KPLLKILFDYKRLHRPLRYIKNDRFENAVRDELSQFFFHTCQSDAKEKISFTYPSSLSTFLEMMQRKMSLFTTEKLSYDE 380
Cdd:CHL00204   321 KPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDE 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  381 LDNHWSSINEQKRNNLSNKFLNRAEAVDKEFLAFDGLEKRIRLCNDETKKKYLPKIYDPLLNGPYRGRIKKSFLLSIKNK 460
Cdd:CHL00204   401 LYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIINE 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  461 TYTKNYI---WINKIHGILLNiNTNYPDFEQKIDTFDKKSLSTEIPFFFYLISQFSGKSISSFNFKGLYLFPEHEKSEDK 537
Cdd:CHL00204   481 TSIKNNIegvWINKIHGILLN-NTDYQEFEQKIDTFNKKSLSTEINESLTLINKFGAEPKSSLNLKGLSLFSEPEQEKIN 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  538 KKKMK----LLFDAIITDPNDKTIrnRKKCIGIKETSKKVPRWSYKLIDEVEYLEG---DGKTEDYEIRSRKAKRVVILT 610
Cdd:CHL00204   560 SEEEIkifkFLFDAVITDPNDQTI--IKKSIGIKEISKKVPRWSYKLIDELEQLEGeneENVPSDHQIRSRKAKRVVIFT 637

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  611 NDSENHDTYTDTKDTDNSDEKEELALIRYSQLPDFRRDIIKGSRRVQRRKTVTWKLFQTSAHSPLFLDKIDKPSFFSFDI 690
Cdd:CHL00204   638 DNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDI 717

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  691 FEPMKIFflFKNWMWKNTELKISDYTEEKTKEIKKKDE----------EKRIEIAEAWDSIIYAQVIRGFLLVTQSIIRK 760
Cdd:CHL00204   718 SGLMKKI--FRNWNGKDAEFKISDSVEEKTKKKKKKEKkkeeeykreeKARIEIAEAWDSILFAQVIRGSLLVTQSILRK 795

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  761 YILLPSLIITKNIVRILLFQFPEWSEDLKDWNREMYIKCTYNAVPLSETEFPKNWLTEGIQIKILFPFRLKPWHRSKLRS 840
Cdd:CHL00204   796 YIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRS 875

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  841 PQKEKYPMKKKVKKmDFCFLTVFGMEVELPFsSSPRNQLSFFDPIFKELKKKMKNWKKQFFLVLKVLNERRKFFLNVSKE 920
Cdd:CHL00204   876 SHKDRMKKKKKKKN-DFCFLTVWGMETELPF-GSPRKRPSFFEPIFKELKKKIRKFKKKYFLVLKILKERTKLFLKVSKE 953

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  921 KAQWIIKSIL--KKILFLKEKIkklllsNLLFIFGLRKRYELNEIQ--KDSTIsnSNPMIYESAIPIQSINWTNYSLTEK 996
Cdd:CHL00204   954 TKKWIIKSFLflKRIIKELSKR------NPILLFGLREIYELNETKkeKDSII--SNQMIHESSVQIRSMEWTNSSLTEK 1025

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  997 KIKNLNDRRKTIIKQIEKFTKDKKKGFLISerNICSKKTTYDDKRLELQKTIWQILQRRNVRLAHKSHYFLKFFMEKVYI 1076
Cdd:CHL00204  1026 KIKDLTDRTKTIRNQIEKITKEKKKITNTI--NISPNKTSYDSKIIESSKKIWQILKRRNTRLIRKSYYFIKFFIERIYI 1103

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1077 DIFVCIINIPRINVQLFLESTKKILNKYIYNNE---ERIDKKNQRLIHFIFTIKKSIWNISNR--NSQNFCDVSSLSQAY 1151
Cdd:CHL00204  1104 DIFLGIINIPRINTQLFLESTKKIIDKYIYKNEenkEKINKKKQNTIHFISTIKKSLYNISNKnkNSKIFYDLSSLSQAY 1183

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1152 VFYKLSQAQVINLykYKLRSVFEYHGRPLFLKNEIKDYfFGVQGIFHSKLKHKTPPNSVMNQWTNWLKGHYQYDLSQSGW 1231
Cdd:CHL00204  1184 VFYKLSQTQVINL--YKLRSVLQYNGTSFFLKNEIKDY-FEAQGIFHSKLKHKNLLNSGMNQWKNWLRSHYQYDLSQIRW 1260

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1232 SRLVPQKWRNRMNERHVAQNKDLTKCHSYEKNRLILYKKQ---EVDSLTNKKKKIKKQYGYDLLSYKSINYADKKdsyiy 1308
Cdd:CHL00204  1261 SRLVPQKWRNRVNQDRMVQNKDLNKWDSYEKDRLIHYKKQndfEANSLLNQKDNFKKDYRYDLLSYKSINYEDKK----- 1335

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1309 gyrspFQANNNQAISYNYNTCKKKLFDMTDDIPIKNYIVEDYILDMEKNLDRKYFDWRILNFCLRNKVDFGAWIDTD--- 1385
Cdd:CHL00204  1336 -----FQVNKNQEISYNYNTRKVNLFDMPEGIAINNYLGKGDILDIEKNPDRKYLDWRILNFSLRKKVDIESWVDTDsks 1410

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1386 --YYFT-------------FHQEINPSNQKRFFFDWMGMNVEILNRSITNREFFFFSKLFLFYNAYTSNPWIIPIKLLFF 1450
Cdd:CHL00204  1411 kkNTKTgvnnyqiidkidhQDFENNQANKKKNFFDWMGMNEEILNRPISNLEFWFFPEFVLLYNTYKIKPWIIPIKLLLL 1490

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1451 NFNVNKNVneKKNITEKKKidIFRPSKKKK----EKRNQGKTEYAGRV----------NLEESLSKKEKDVEEDYAGSDM 1516
Cdd:CHL00204  1491 NLNGNENV--NKKINQKKK--GFIPSNEKKsieiENRNQEEKEPAGQGelesdkekkgNLESVLSNQEKNIEEDYAESDI 1566

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1517 KKGVKEKKYKNNIEAELNCFLRRYLLFQLNWCDCLNEKIMNNIKVYCLLLRLINLKQIAIASIQRGELSLDIMKINNqtD 1596
Cdd:CHL00204  1567 KKRKNKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINPREIAISSIQRGEMSLDIMMIQK--N 1644

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1597 FTLTELnknkesMKKGILSIKPTRLSRKNHEQFIMYQTISLSLIHKRKHQINQRYREKSYVDKKNFDKSIPRttDQKLTE 1676
Cdd:CHL00204  1645 LTLTEL------MKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFDESITK--HQTITE 1716

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1677 NKEKNHYDLLVPENILSTRRRRELRILICFNPRNRNSVHRNTAFYNENKVNNCCQVLVTSKDLDRDKKKLINLKLFLWPN 1756
Cdd:CHL00204  1717 NRDKNHYDLLVPENILSPKRRRELRILICFNSKNKNAVDRNSVFCNEKNVKNCGQVLDKKKDLDKDKNKLIKLKFFLWPN 1796

                         1850      1860      1870
                   ....*....|....*....|....*....|....*.
gi 1834970681 1757 YRLEDLACMNRYWFDTNNGSRFSMVRIHMYPRLKIR 1792
Cdd:CHL00204  1797 YRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1792 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2469.16  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681    8 LDNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681   85 GRPHTITVIALPYLLFLFFCNNHKHFLNYGSTNQNSMRNFSIQRIFLNNLLFQLLNLFILPSSMLVRLVNIYMFRCNNQF 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  165 LFLTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIKSNVLIRSNKYIMSELRNYM---FIIFLFITCLYYLGRTPSPIFIK 241
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMariFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  242 K---------RGEIDNKIDV--ERTSKTKVTKKEQNKSTEEYLSPSVFSEEREESYKIDEREE----------KEIFRLE 300
Cdd:CHL00204   241 KlketseteeRVESEEETDVeiETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEirvngkekikKDLFWFE 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  301 KPLLKILFDYKRLHRPLRYIKNDRFENAVRDELSQFFFHTCQSDAKEKISFTYPSSLSTFLEMMQRKMSLFTTEKLSYDE 380
Cdd:CHL00204   321 KPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDE 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  381 LDNHWSSINEQKRNNLSNKFLNRAEAVDKEFLAFDGLEKRIRLCNDETKKKYLPKIYDPLLNGPYRGRIKKSFLLSIKNK 460
Cdd:CHL00204   401 LYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIINE 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  461 TYTKNYI---WINKIHGILLNiNTNYPDFEQKIDTFDKKSLSTEIPFFFYLISQFSGKSISSFNFKGLYLFPEHEKSEDK 537
Cdd:CHL00204   481 TSIKNNIegvWINKIHGILLN-NTDYQEFEQKIDTFNKKSLSTEINESLTLINKFGAEPKSSLNLKGLSLFSEPEQEKIN 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  538 KKKMK----LLFDAIITDPNDKTIrnRKKCIGIKETSKKVPRWSYKLIDEVEYLEG---DGKTEDYEIRSRKAKRVVILT 610
Cdd:CHL00204   560 SEEEIkifkFLFDAVITDPNDQTI--IKKSIGIKEISKKVPRWSYKLIDELEQLEGeneENVPSDHQIRSRKAKRVVIFT 637

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  611 NDSENHDTYTDTKDTDNSDEKEELALIRYSQLPDFRRDIIKGSRRVQRRKTVTWKLFQTSAHSPLFLDKIDKPSFFSFDI 690
Cdd:CHL00204   638 DNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDI 717

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  691 FEPMKIFflFKNWMWKNTELKISDYTEEKTKEIKKKDE----------EKRIEIAEAWDSIIYAQVIRGFLLVTQSIIRK 760
Cdd:CHL00204   718 SGLMKKI--FRNWNGKDAEFKISDSVEEKTKKKKKKEKkkeeeykreeKARIEIAEAWDSILFAQVIRGSLLVTQSILRK 795

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  761 YILLPSLIITKNIVRILLFQFPEWSEDLKDWNREMYIKCTYNAVPLSETEFPKNWLTEGIQIKILFPFRLKPWHRSKLRS 840
Cdd:CHL00204   796 YIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRS 875

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  841 PQKEKYPMKKKVKKmDFCFLTVFGMEVELPFsSSPRNQLSFFDPIFKELKKKMKNWKKQFFLVLKVLNERRKFFLNVSKE 920
Cdd:CHL00204   876 SHKDRMKKKKKKKN-DFCFLTVWGMETELPF-GSPRKRPSFFEPIFKELKKKIRKFKKKYFLVLKILKERTKLFLKVSKE 953

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  921 KAQWIIKSIL--KKILFLKEKIkklllsNLLFIFGLRKRYELNEIQ--KDSTIsnSNPMIYESAIPIQSINWTNYSLTEK 996
Cdd:CHL00204   954 TKKWIIKSFLflKRIIKELSKR------NPILLFGLREIYELNETKkeKDSII--SNQMIHESSVQIRSMEWTNSSLTEK 1025

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  997 KIKNLNDRRKTIIKQIEKFTKDKKKGFLISerNICSKKTTYDDKRLELQKTIWQILQRRNVRLAHKSHYFLKFFMEKVYI 1076
Cdd:CHL00204  1026 KIKDLTDRTKTIRNQIEKITKEKKKITNTI--NISPNKTSYDSKIIESSKKIWQILKRRNTRLIRKSYYFIKFFIERIYI 1103

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1077 DIFVCIINIPRINVQLFLESTKKILNKYIYNNE---ERIDKKNQRLIHFIFTIKKSIWNISNR--NSQNFCDVSSLSQAY 1151
Cdd:CHL00204  1104 DIFLGIINIPRINTQLFLESTKKIIDKYIYKNEenkEKINKKKQNTIHFISTIKKSLYNISNKnkNSKIFYDLSSLSQAY 1183

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1152 VFYKLSQAQVINLykYKLRSVFEYHGRPLFLKNEIKDYfFGVQGIFHSKLKHKTPPNSVMNQWTNWLKGHYQYDLSQSGW 1231
Cdd:CHL00204  1184 VFYKLSQTQVINL--YKLRSVLQYNGTSFFLKNEIKDY-FEAQGIFHSKLKHKNLLNSGMNQWKNWLRSHYQYDLSQIRW 1260

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1232 SRLVPQKWRNRMNERHVAQNKDLTKCHSYEKNRLILYKKQ---EVDSLTNKKKKIKKQYGYDLLSYKSINYADKKdsyiy 1308
Cdd:CHL00204  1261 SRLVPQKWRNRVNQDRMVQNKDLNKWDSYEKDRLIHYKKQndfEANSLLNQKDNFKKDYRYDLLSYKSINYEDKK----- 1335

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1309 gyrspFQANNNQAISYNYNTCKKKLFDMTDDIPIKNYIVEDYILDMEKNLDRKYFDWRILNFCLRNKVDFGAWIDTD--- 1385
Cdd:CHL00204  1336 -----FQVNKNQEISYNYNTRKVNLFDMPEGIAINNYLGKGDILDIEKNPDRKYLDWRILNFSLRKKVDIESWVDTDsks 1410

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1386 --YYFT-------------FHQEINPSNQKRFFFDWMGMNVEILNRSITNREFFFFSKLFLFYNAYTSNPWIIPIKLLFF 1450
Cdd:CHL00204  1411 kkNTKTgvnnyqiidkidhQDFENNQANKKKNFFDWMGMNEEILNRPISNLEFWFFPEFVLLYNTYKIKPWIIPIKLLLL 1490

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1451 NFNVNKNVneKKNITEKKKidIFRPSKKKK----EKRNQGKTEYAGRV----------NLEESLSKKEKDVEEDYAGSDM 1516
Cdd:CHL00204  1491 NLNGNENV--NKKINQKKK--GFIPSNEKKsieiENRNQEEKEPAGQGelesdkekkgNLESVLSNQEKNIEEDYAESDI 1566

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1517 KKGVKEKKYKNNIEAELNCFLRRYLLFQLNWCDCLNEKIMNNIKVYCLLLRLINLKQIAIASIQRGELSLDIMKINNqtD 1596
Cdd:CHL00204  1567 KKRKNKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINPREIAISSIQRGEMSLDIMMIQK--N 1644

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1597 FTLTELnknkesMKKGILSIKPTRLSRKNHEQFIMYQTISLSLIHKRKHQINQRYREKSYVDKKNFDKSIPRttDQKLTE 1676
Cdd:CHL00204  1645 LTLTEL------MKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFDESITK--HQTITE 1716

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1677 NKEKNHYDLLVPENILSTRRRRELRILICFNPRNRNSVHRNTAFYNENKVNNCCQVLVTSKDLDRDKKKLINLKLFLWPN 1756
Cdd:CHL00204  1717 NRDKNHYDLLVPENILSPKRRRELRILICFNSKNKNAVDRNSVFCNEKNVKNCGQVLDKKKDLDKDKNKLIKLKFFLWPN 1796

                         1850      1860      1870
                   ....*....|....*....|....*....|....*.
gi 1834970681 1757 YRLEDLACMNRYWFDTNNGSRFSMVRIHMYPRLKIR 1792
Cdd:CHL00204  1797 YRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-886 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1251.34  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681   22 VVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVIALPYL 98
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681   99 LFLFFCNNHKHFLNYGSTNQNSMRNFSIQRIFLNNLLFQLLNLFILPSSMLVRLVNIYMFRCNNQFLFLTSSFVGWLIGH 178
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  179 ILFMKWVGLVLVWIQQNNSIKSNVLIRSNKYIMSELRNYM---FIIFLFITCLYYLGRTPSPIFIKK---------RGEI 246
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMariFSILLFITCVYYLGRIPSPIFTKKlketseteeRYES 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  247 DNKIDV--ERTSKTKVTKKEQNKSTEEYLSPSVFSEEREESYKIDEREE------------------------------- 293
Cdd:pfam05758  241 EEETDVeiETTSETKGTKQEQERSTEEDPSPSLFSEEGEDLDKIDETEEirvngkdkikdefhfhfretcyknspiyets 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  294 --------------------KEIFRLEKPLLKILFDYKRLHRPLRYIKNDRFENAVRDELSQFFFHTCQSDAKEKISFTY 353
Cdd:pfam05758  321 yldgnqenskleilkekkknKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERISFTY 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  354 PSSLSTFLEMMQRKMSLFTTEKLSYDELDNHWSSINEQKRNNLSNKFLNRAEAVDKEFLAFDGLEKRIRLCNDETKKKYL 433
Cdd:pfam05758  401 PPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKKEYL 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  434 PKIYDPLLNGPYRGRIKKSFLLSIKNKTYTKNY---IWINKIHGILLNIntNYPDFEQKIDTFDKKSLSTEIPFFFYLIS 510
Cdd:pfam05758  481 PKIYDPFLNGPYRGRIKKVFSPSIINKTSRKNSlegVWINKIHGILLSS--NYPEFEQKINIFDRKSLSTEIDYFLNLIN 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  511 QFSGKSISSFNFKGLYLFP----EHEKSEDKKKKMKLLFDAIITDPNDKTIrnRKKCIGIKETSKKVPRWSYKLIDEVEY 586
Cdd:pfam05758  559 EFSKKSVSSLNFKGLSLFPeqeqVKINSEEEKKILKFLFDAVRTDSNEKTI--RKKSIGIKEINKKVPRWSYKLIDELEQ 636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  587 LEG---DGKTEDYEIRSRKAKRVVILTNDSENHDTYTDTKDTDNSDEKEELALIRYSQLPDFRRDIIKGSRRVQRRKTVT 663
Cdd:pfam05758  637 LEGeneENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVI 716

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  664 WKLFQTSAHSPLFLDKIDKPSFFSFDIFEPMKIffLFKNWMWKNTELKISDYTEEKTKEIKKKDEEK----------RIE 733
Cdd:pfam05758  717 WELFQANVHSPLFLDRIDKPLFFSFDIFGLIKI--IFKNWMRKKEEFKISSYTEEKTKESSKKEEDKkednkreeraRIE 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  734 IAEAWDSIIYAQVIRGFLLVTQSIIRKYILLPSLIITKNIVRILLFQFPEWSEDLKDWNREMYIKCTYNAVPLSETEFPK 813
Cdd:pfam05758  795 IAEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPK 874

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1834970681  814 NWLTEGIQIKILFPFRLKPWHRSKLRSPQKEkyPMKKKVKKMDFCFLTVFGMEVELPFsSSPRNQLSFFDPIF 886
Cdd:pfam05758  875 NWLTDGIQIKILFPFRLKPWHKSKLRSSEKD--LMKKKVQKNDFCFLTVWGMETELPF-GSPRKRPSFFEPIF 944
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1792 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2469.16  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681    8 LDNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681   85 GRPHTITVIALPYLLFLFFCNNHKHFLNYGSTNQNSMRNFSIQRIFLNNLLFQLLNLFILPSSMLVRLVNIYMFRCNNQF 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  165 LFLTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIKSNVLIRSNKYIMSELRNYM---FIIFLFITCLYYLGRTPSPIFIK 241
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMariFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  242 K---------RGEIDNKIDV--ERTSKTKVTKKEQNKSTEEYLSPSVFSEEREESYKIDEREE----------KEIFRLE 300
Cdd:CHL00204   241 KlketseteeRVESEEETDVeiETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEirvngkekikKDLFWFE 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  301 KPLLKILFDYKRLHRPLRYIKNDRFENAVRDELSQFFFHTCQSDAKEKISFTYPSSLSTFLEMMQRKMSLFTTEKLSYDE 380
Cdd:CHL00204   321 KPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQSDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDE 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  381 LDNHWSSINEQKRNNLSNKFLNRAEAVDKEFLAFDGLEKRIRLCNDETKKKYLPKIYDPLLNGPYRGRIKKSFLLSIKNK 460
Cdd:CHL00204   401 LYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTRLCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIINE 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  461 TYTKNYI---WINKIHGILLNiNTNYPDFEQKIDTFDKKSLSTEIPFFFYLISQFSGKSISSFNFKGLYLFPEHEKSEDK 537
Cdd:CHL00204   481 TSIKNNIegvWINKIHGILLN-NTDYQEFEQKIDTFNKKSLSTEINESLTLINKFGAEPKSSLNLKGLSLFSEPEQEKIN 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  538 KKKMK----LLFDAIITDPNDKTIrnRKKCIGIKETSKKVPRWSYKLIDEVEYLEG---DGKTEDYEIRSRKAKRVVILT 610
Cdd:CHL00204   560 SEEEIkifkFLFDAVITDPNDQTI--IKKSIGIKEISKKVPRWSYKLIDELEQLEGeneENVPSDHQIRSRKAKRVVIFT 637

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  611 NDSENHDTYTDTKDTDNSDEKEELALIRYSQLPDFRRDIIKGSRRVQRRKTVTWKLFQTSAHSPLFLDKIDKPSFFSFDI 690
Cdd:CHL00204   638 DNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKGSMRAQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDI 717

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  691 FEPMKIFflFKNWMWKNTELKISDYTEEKTKEIKKKDE----------EKRIEIAEAWDSIIYAQVIRGFLLVTQSIIRK 760
Cdd:CHL00204   718 SGLMKKI--FRNWNGKDAEFKISDSVEEKTKKKKKKEKkkeeeykreeKARIEIAEAWDSILFAQVIRGSLLVTQSILRK 795

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  761 YILLPSLIITKNIVRILLFQFPEWSEDLKDWNREMYIKCTYNAVPLSETEFPKNWLTEGIQIKILFPFRLKPWHRSKLRS 840
Cdd:CHL00204   796 YIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLSETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRS 875

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  841 PQKEKYPMKKKVKKmDFCFLTVFGMEVELPFsSSPRNQLSFFDPIFKELKKKMKNWKKQFFLVLKVLNERRKFFLNVSKE 920
Cdd:CHL00204   876 SHKDRMKKKKKKKN-DFCFLTVWGMETELPF-GSPRKRPSFFEPIFKELKKKIRKFKKKYFLVLKILKERTKLFLKVSKE 953

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  921 KAQWIIKSIL--KKILFLKEKIkklllsNLLFIFGLRKRYELNEIQ--KDSTIsnSNPMIYESAIPIQSINWTNYSLTEK 996
Cdd:CHL00204   954 TKKWIIKSFLflKRIIKELSKR------NPILLFGLREIYELNETKkeKDSII--SNQMIHESSVQIRSMEWTNSSLTEK 1025

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  997 KIKNLNDRRKTIIKQIEKFTKDKKKGFLISerNICSKKTTYDDKRLELQKTIWQILQRRNVRLAHKSHYFLKFFMEKVYI 1076
Cdd:CHL00204  1026 KIKDLTDRTKTIRNQIEKITKEKKKITNTI--NISPNKTSYDSKIIESSKKIWQILKRRNTRLIRKSYYFIKFFIERIYI 1103

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1077 DIFVCIINIPRINVQLFLESTKKILNKYIYNNE---ERIDKKNQRLIHFIFTIKKSIWNISNR--NSQNFCDVSSLSQAY 1151
Cdd:CHL00204  1104 DIFLGIINIPRINTQLFLESTKKIIDKYIYKNEenkEKINKKKQNTIHFISTIKKSLYNISNKnkNSKIFYDLSSLSQAY 1183

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1152 VFYKLSQAQVINLykYKLRSVFEYHGRPLFLKNEIKDYfFGVQGIFHSKLKHKTPPNSVMNQWTNWLKGHYQYDLSQSGW 1231
Cdd:CHL00204  1184 VFYKLSQTQVINL--YKLRSVLQYNGTSFFLKNEIKDY-FEAQGIFHSKLKHKNLLNSGMNQWKNWLRSHYQYDLSQIRW 1260

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1232 SRLVPQKWRNRMNERHVAQNKDLTKCHSYEKNRLILYKKQ---EVDSLTNKKKKIKKQYGYDLLSYKSINYADKKdsyiy 1308
Cdd:CHL00204  1261 SRLVPQKWRNRVNQDRMVQNKDLNKWDSYEKDRLIHYKKQndfEANSLLNQKDNFKKDYRYDLLSYKSINYEDKK----- 1335

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1309 gyrspFQANNNQAISYNYNTCKKKLFDMTDDIPIKNYIVEDYILDMEKNLDRKYFDWRILNFCLRNKVDFGAWIDTD--- 1385
Cdd:CHL00204  1336 -----FQVNKNQEISYNYNTRKVNLFDMPEGIAINNYLGKGDILDIEKNPDRKYLDWRILNFSLRKKVDIESWVDTDsks 1410

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1386 --YYFT-------------FHQEINPSNQKRFFFDWMGMNVEILNRSITNREFFFFSKLFLFYNAYTSNPWIIPIKLLFF 1450
Cdd:CHL00204  1411 kkNTKTgvnnyqiidkidhQDFENNQANKKKNFFDWMGMNEEILNRPISNLEFWFFPEFVLLYNTYKIKPWIIPIKLLLL 1490

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1451 NFNVNKNVneKKNITEKKKidIFRPSKKKK----EKRNQGKTEYAGRV----------NLEESLSKKEKDVEEDYAGSDM 1516
Cdd:CHL00204  1491 NLNGNENV--NKKINQKKK--GFIPSNEKKsieiENRNQEEKEPAGQGelesdkekkgNLESVLSNQEKNIEEDYAESDI 1566

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1517 KKGVKEKKYKNNIEAELNCFLRRYLLFQLNWCDCLNEKIMNNIKVYCLLLRLINLKQIAIASIQRGELSLDIMKINNqtD 1596
Cdd:CHL00204  1567 KKRKNKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNIKVYCLLLRLINPREIAISSIQRGEMSLDIMMIQK--N 1644

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1597 FTLTELnknkesMKKGILSIKPTRLSRKNHEQFIMYQTISLSLIHKRKHQINQRYREKSYVDKKNFDKSIPRttDQKLTE 1676
Cdd:CHL00204  1645 LTLTEL------MKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQINQRYREKKYVDKKNFDESITK--HQTITE 1716

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681 1677 NKEKNHYDLLVPENILSTRRRRELRILICFNPRNRNSVHRNTAFYNENKVNNCCQVLVTSKDLDRDKKKLINLKLFLWPN 1756
Cdd:CHL00204  1717 NRDKNHYDLLVPENILSPKRRRELRILICFNSKNKNAVDRNSVFCNEKNVKNCGQVLDKKKDLDKDKNKLIKLKFFLWPN 1796

                         1850      1860      1870
                   ....*....|....*....|....*....|....*.
gi 1834970681 1757 YRLEDLACMNRYWFDTNNGSRFSMVRIHMYPRLKIR 1792
Cdd:CHL00204  1797 YRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-886 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1251.34  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681   22 VVVVGLYYGFLTTFSIGPSYLFLLRARVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVIALPYL 98
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681   99 LFLFFCNNHKHFLNYGSTNQNSMRNFSIQRIFLNNLLFQLLNLFILPSSMLVRLVNIYMFRCNNQFLFLTSSFVGWLIGH 178
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  179 ILFMKWVGLVLVWIQQNNSIKSNVLIRSNKYIMSELRNYM---FIIFLFITCLYYLGRTPSPIFIKK---------RGEI 246
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRSNVLIRSNKYLVSELRNSMariFSILLFITCVYYLGRIPSPIFTKKlketseteeRYES 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  247 DNKIDV--ERTSKTKVTKKEQNKSTEEYLSPSVFSEEREESYKIDEREE------------------------------- 293
Cdd:pfam05758  241 EEETDVeiETTSETKGTKQEQERSTEEDPSPSLFSEEGEDLDKIDETEEirvngkdkikdefhfhfretcyknspiyets 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  294 --------------------KEIFRLEKPLLKILFDYKRLHRPLRYIKNDRFENAVRDELSQFFFHTCQSDAKEKISFTY 353
Cdd:pfam05758  321 yldgnqenskleilkekkknKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERISFTY 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  354 PSSLSTFLEMMQRKMSLFTTEKLSYDELDNHWSSINEQKRNNLSNKFLNRAEAVDKEFLAFDGLEKRIRLCNDETKKKYL 433
Cdd:pfam05758  401 PPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKKEYL 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  434 PKIYDPLLNGPYRGRIKKSFLLSIKNKTYTKNY---IWINKIHGILLNIntNYPDFEQKIDTFDKKSLSTEIPFFFYLIS 510
Cdd:pfam05758  481 PKIYDPFLNGPYRGRIKKVFSPSIINKTSRKNSlegVWINKIHGILLSS--NYPEFEQKINIFDRKSLSTEIDYFLNLIN 558

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  511 QFSGKSISSFNFKGLYLFP----EHEKSEDKKKKMKLLFDAIITDPNDKTIrnRKKCIGIKETSKKVPRWSYKLIDEVEY 586
Cdd:pfam05758  559 EFSKKSVSSLNFKGLSLFPeqeqVKINSEEEKKILKFLFDAVRTDSNEKTI--RKKSIGIKEINKKVPRWSYKLIDELEQ 636

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  587 LEG---DGKTEDYEIRSRKAKRVVILTNDSENHDTYTDTKDTDNSDEKEELALIRYSQLPDFRRDIIKGSRRVQRRKTVT 663
Cdd:pfam05758  637 LEGeneENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVI 716

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  664 WKLFQTSAHSPLFLDKIDKPSFFSFDIFEPMKIffLFKNWMWKNTELKISDYTEEKTKEIKKKDEEK----------RIE 733
Cdd:pfam05758  717 WELFQANVHSPLFLDRIDKPLFFSFDIFGLIKI--IFKNWMRKKEEFKISSYTEEKTKESSKKEEDKkednkreeraRIE 794

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1834970681  734 IAEAWDSIIYAQVIRGFLLVTQSIIRKYILLPSLIITKNIVRILLFQFPEWSEDLKDWNREMYIKCTYNAVPLSETEFPK 813
Cdd:pfam05758  795 IAEAWDSILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPK 874

                          890       900       910       920       930       940       950
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1834970681  814 NWLTEGIQIKILFPFRLKPWHRSKLRSPQKEkyPMKKKVKKMDFCFLTVFGMEVELPFsSSPRNQLSFFDPIF 886
Cdd:pfam05758  875 NWLTDGIQIKILFPFRLKPWHKSKLRSSEKD--LMKKKVQKNDFCFLTVWGMETELPF-GSPRKRPSFFEPIF 944
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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