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Conserved domains on  [gi|1999117240|ref|YP_010010062|]
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NADH dehydrogenase subunit 5 (mitochondrion) [Sipalinus gigas]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
2-572 0e+00

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 668.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240   2 LSICKVYFYLFMFFSFNLFFFSLYLMSTDLSYLLEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMG 81
Cdd:MTH00165    1 MSMCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  82 DVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLN 161
Cdd:MTH00165   81 DKNINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMN 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 162 FGSWNYVFYLEFPK-DGYLGIVATFVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF-SG 239
Cdd:MTH00165  161 FGSWNFIFYLDFMKnSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLfSS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 240 DLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLG 319
Cdd:MTH00165  241 FFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMS 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 320 NCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCF 399
Cdd:MTH00165  321 NSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSM 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 400 TGEFNLLSSHGLSDEPGPMLESMGILIFMVIFGGSLLMWLMFPTPVFICLPFYMKVFALGLIFLGMWVGYEASKFYLTDK 479
Cdd:MTH00165  401 SGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYN 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 480 PIGLLYHDFSSFSANMWNLTILSTFGVSPLPMHLGSVYLKGLDQGWLEYYGSQNLYKTLKGSSMFMQLLSRNHMKVFLML 559
Cdd:MTH00165  481 LKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLS 560
                         570
                  ....*....|...
gi 1999117240 560 TLFWLMFLFVSMF 572
Cdd:MTH00165  561 FLLWMIILLLLFL 573
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
2-572 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 668.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240   2 LSICKVYFYLFMFFSFNLFFFSLYLMSTDLSYLLEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMG 81
Cdd:MTH00165    1 MSMCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  82 DVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLN 161
Cdd:MTH00165   81 DKNINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMN 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 162 FGSWNYVFYLEFPK-DGYLGIVATFVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF-SG 239
Cdd:MTH00165  161 FGSWNFIFYLDFMKnSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLfSS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 240 DLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLG 319
Cdd:MTH00165  241 FFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMS 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 320 NCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCF 399
Cdd:MTH00165  321 NSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSM 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 400 TGEFNLLSSHGLSDEPGPMLESMGILIFMVIFGGSLLMWLMFPTPVFICLPFYMKVFALGLIFLGMWVGYEASKFYLTDK 479
Cdd:MTH00165  401 SGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYN 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 480 PIGLLYHDFSSFSANMWNLTILSTFGVSPLPMHLGSVYLKGLDQGWLEYYGSQNLYKTLKGSSMFMQLLSRNHMKVFLML 559
Cdd:MTH00165  481 LKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLS 560
                         570
                  ....*....|...
gi 1999117240 560 TLFWLMFLFVSMF 572
Cdd:MTH00165  561 FLLWMIILLLLFL 573
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
40-469 2.57e-104

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 326.72  E-value: 2.57e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  40 LSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLG 119
Cdd:COG1009    65 IPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVG 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 120 LVSYALVIYYQNVKSSNAGMLTA-LTNRIGDVALLMSIAWMLN-FGSWNYVFYLEFPKD----GYLGIVATFVVLAAITK 193
Cdd:COG1009   145 LCSYLLIGFWYEKPSARRAARKAfLVTRVGDLGLLLGILLLGAiAGTLNFSELLAAAPTilssPLLTLILLLLLLGAFGK 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 194 SAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSG--DLLKFLLVLSMMTMFMAGLGANFEYDLKKIIA 271
Cdd:COG1009   225 SAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALspVWLTVVAIIGAITALFAALIALAQTDIKRVLA 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 272 LSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALCGL 351
Cdd:COG1009   305 YSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGI 383
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 352 PFLSGFYSKDLIVESM-SMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMVI 430
Cdd:COG1009   384 PPFAGFFSKEAILEAAlEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSL 463
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1999117240 431 FGGSLLMWLM---------FPTPVFICLPFYMKVFALGLIFLGMWVGY 469
Cdd:COG1009   464 VLGLLLPGLLegllapaavLGGELHLAHGLLLNALPLLLSLLGIALGY 511
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
49-442 1.40e-89

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 288.41  E-value: 1.40e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  49 FTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALV-I 127
Cdd:TIGR01974  77 FGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIgF 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 128 YYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLN-FGSWNY--VFYLEFPKD-GYLGIVATFVVLAAITKSAQIPFSSWL 203
Cdd:TIGR01974 157 WYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWyFGTLNFqeVFALAPGAFfSALTLICLLLFIGAMGKSAQLPLHTWL 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 204 PAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF--SGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLM 281
Cdd:TIGR01974 237 PDAMEGPTPVSALIHAATMVTAGVYLVARTSPLFelSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYM 316
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 282 ISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKD 361
Cdd:TIGR01974 317 FLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKD 396
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 362 LIVES-MSMGYLnMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMVIFGGSLLMWLM 440
Cdd:TIGR01974 397 LILEAaFASGTH-SFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLF 475

                  ..
gi 1999117240 441 FP 442
Cdd:TIGR01974 476 EF 477
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
105-380 2.47e-52

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 180.59  E-value: 2.47e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 105 SPNLVSILLGWDGLGLVSYALVIYY-QNVKSSNAGMLTALTNRIGDVALLMSIAWMLNFGSWNYVFYLEFPKDGYLG--- 180
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNssg 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 181 --IVATFVVLAAITKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFN---AAFSGDLLKFLLVLSMMTMF 254
Cdd:pfam00361  81 llLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSllyLPSSPFIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 255 MAGLGANFEYDLKKIIALSTLSQLGLMISILCLG---SHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLV 331
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1999117240 332 SSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVE-SMSMGYLNMFVYVVF 380
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAaAVAASWIFLVLAGVV 289
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
2-572 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 668.00  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240   2 LSICKVYFYLFMFFSFNLFFFSLYLMSTDLSYLLEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMG 81
Cdd:MTH00165    1 MSMCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  82 DVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLN 161
Cdd:MTH00165   81 DKNINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMN 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 162 FGSWNYVFYLEFPK-DGYLGIVATFVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF-SG 239
Cdd:MTH00165  161 FGSWNFIFYLDFMKnSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLfSS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 240 DLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLG 319
Cdd:MTH00165  241 FFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMS 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 320 NCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCF 399
Cdd:MTH00165  321 NSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSM 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 400 TGEFNLLSSHGLSDEPGPMLESMGILIFMVIFGGSLLMWLMFPTPVFICLPFYMKVFALGLIFLGMWVGYEASKFYLTDK 479
Cdd:MTH00165  401 SGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYN 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 480 PIGLLYHDFSSFSANMWNLTILSTFGVSPLPMHLGSVYLKGLDQGWLEYYGSQNLYKTLKGSSMFMQLLSRNHMKVFLML 559
Cdd:MTH00165  481 LKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLS 560
                         570
                  ....*....|...
gi 1999117240 560 TLFWLMFLFVSMF 572
Cdd:MTH00165  561 FLLWMIILLLLFL 573
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
25-572 1.66e-172

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 500.52  E-value: 1.66e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  25 YLMSTDLSYLLEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLII 104
Cdd:MTH00151   24 YFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMWLVMLFVLSMNLLIF 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 105 SPNLVSILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLNFGSWNYVFYLEFPkdgYLGIVAT 184
Cdd:MTH00151  104 IPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVLLGHWSILSMWDFK---LSGWLGL 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 185 FVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRF--NAAFSGDLLKFLLVLSMMTMFMAGLGANF 262
Cdd:MTH00151  181 LLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFfpFLSSSSGFSSFLLFISLLTLLMAGISACY 260
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 263 EYDLKKIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFN 342
Cdd:MTH00151  261 ENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLN 340
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 343 ICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESM 422
Cdd:MTH00151  341 ISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPM 420
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 423 GILIFMVIFGGSLLMWLMFPTPVFICLPFYMKVFALGLIFLGMWVGYEASKFYLTDKPIGLLYHDFSSfsanMWNLTILS 502
Cdd:MTH00151  421 LLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSFGFWDSGFSSSKMVKLSFFFSS----MWFLSPLS 496
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 503 TFGVSPLPMHLGSVYLKGLDQGWLEYYGSQNLYKTLKgSSMFMQLLSRNHMKVFLMLTLFWLMFLFVSMF 572
Cdd:MTH00151  497 SQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANK-SFSVLNESWPVKWFNFFIGLILLLVLFLVVIS 565
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
25-571 4.54e-164

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 479.14  E-value: 4.54e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  25 YLMSTDLSYLLEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLII 104
Cdd:MTH00209   22 IFMWFQKIVILEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRFILLVLLFILSMNFLIF 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 105 SPNLVSILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLNFGSWNyVFYLEFPKdGYLGIVAT 184
Cdd:MTH00209  102 VPNLITLLLGWDGLGLVSYLLVIYYQNSKSLSAGMLTALTNRVGDALLILSIAWMLMHGNWN-IFYLNFNS-NLGSVISV 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 185 FVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLL--KFLLVLSMMTMFMAGLGANF 262
Cdd:MTH00209  180 LIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPFfsMSLLLLGSLTTLMASMSANV 259
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 263 EYDLKKIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFN 342
Cdd:MTH00209  260 ESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLN 339
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 343 ICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESM 422
Cdd:MTH00209  340 IANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPM 419
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 423 GILIFMVIFGGSLLMWLMFPTPVFICLPFYMKVFALGLIFLGMWVGYEASKFYLtdkpIGLLYHDFSSFSANMWNLTILS 502
Cdd:MTH00209  420 LVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMVLKKNF----FLIKGYKVNYFLSQMWFLPDLS 495
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1999117240 503 TFGVSPLPMHLGSVYLKGLDQGWLEYYGSQNLYKTLKGSSMFMQLLSRNHMKVFLMLTLFWLMFLFVSM 571
Cdd:MTH00209  496 SQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQNNSLKLFVTFMMLILLGVILFM 564
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
1-574 1.05e-157

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 463.08  E-value: 1.05e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240   1 MLSICKVYFYLFMFFSFNLFFFSLYLMSTDLSYLLEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMM 80
Cdd:MTH00207    3 MFKPSSIASYLLWFMSILMFPLSLYLMMCNKTILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  81 GDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAWML 160
Cdd:MTH00207   83 EDKFLSRFISLVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILVIYYQNPKSLGAGMITALTNRIGDVMLLLSIGWTL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 161 NFGSWNYVFYLEFPKDGYLGIVatfVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGD 240
Cdd:MTH00207  163 NQGHWSITNMWQTDMNNYIALS---IMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSST 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 241 LL--KFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSL 318
Cdd:MTH00207  240 YWfnPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSH 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 319 GNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYC 398
Cdd:MTH00207  320 HHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAV 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 399 FTGEFNLLSSHGLSDEPGPMLESMGILIFMVIFGGSLLMWLMFPTPVFICLPFYMKVFALGLIFLGMWVGYEASKFYLTD 478
Cdd:MTH00207  400 LWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLFTTPNITK 479
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 479 KPIGLLYHDFSSFSANMWNLTILSTFGVSPLPMHLGSVYLKGLDQGWLEYYGSQNLYKTLKGSSMFMQLLSRNHMKVFLM 558
Cdd:MTH00207  480 TPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMFSRSSNNVMKLQKNIPNNYLM 559
                         570
                  ....*....|....*.
gi 1999117240 559 LTlfwLMFLFVSMFIN 574
Cdd:MTH00207  560 MS---FVLLTIIIIMT 572
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
34-574 6.79e-117

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 358.88  E-value: 6.79e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  34 LLEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILL 113
Cdd:MTH00211   58 LTNWSWINLGLFSLNLSFKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQLFI 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 114 GWDGLGLVSYALVIYYQNVKSSNAGMLTALT-NRIGDVALLMSIAWML-NFGSWNYVFYLEFPKDGYLGIVatFVVLAAI 191
Cdd:MTH00211  138 GWEGVGIMSFLLISWWYGRSDANTAALQAVIyNRIGDIGLLLSMVWLLlNLNSWEISQLFILNLDLTLFLL--GLLLAAM 215
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 192 TKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF--SGDLLKFLLVLSMMTMFMAGLGANFEYDLKKI 269
Cdd:MTH00211  216 GKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFqnNQLILGAVLLLGALTMLFGALCALTQNDIKKI 295
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 270 IALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALC 349
Cdd:MTH00211  296 VAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALM 375
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 350 GLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMV 429
Cdd:MTH00211  376 GFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGS 455
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 430 IFGGSLLMWLMFPTPVFI-CLPFYMKVFALGLIFLGMWVGYEASKFYLTDKPIGLLyhdfsSFSANMWNLTILSTFGVSP 508
Cdd:MTH00211  456 ILAGFIITSNLPPEKPEIlSLPFLLKLMPLLVTIVGLLLGLELVNLTHKQLKTSTL-----SFSNMLGYYPPIIHRLLPK 530
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1999117240 509 LPMHLG-SVYLKGLDQGWLEYYGSQNLYKTLKGSSMFMQLLSRNHMKVFLMLTLFWLMFLFVSMFIN 574
Cdd:MTH00211  531 LSLKWGqTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTSPQQGLIKSYLALLLLSLLLILLLFLLF 597
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
40-469 2.57e-104

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 326.72  E-value: 2.57e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  40 LSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLG 119
Cdd:COG1009    65 IPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVG 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 120 LVSYALVIYYQNVKSSNAGMLTA-LTNRIGDVALLMSIAWMLN-FGSWNYVFYLEFPKD----GYLGIVATFVVLAAITK 193
Cdd:COG1009   145 LCSYLLIGFWYEKPSARRAARKAfLVTRVGDLGLLLGILLLGAiAGTLNFSELLAAAPTilssPLLTLILLLLLLGAFGK 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 194 SAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSG--DLLKFLLVLSMMTMFMAGLGANFEYDLKKIIA 271
Cdd:COG1009   225 SAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALspVWLTVVAIIGAITALFAALIALAQTDIKRVLA 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 272 LSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALCGL 351
Cdd:COG1009   305 YSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATGT-RDIRKMGGLRKKMPITAITFLIGALSLAGI 383
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 352 PFLSGFYSKDLIVESM-SMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMVI 430
Cdd:COG1009   384 PPFAGFFSKEAILEAAlEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSL 463
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1999117240 431 FGGSLLMWLM---------FPTPVFICLPFYMKVFALGLIFLGMWVGY 469
Cdd:COG1009   464 VLGLLLPGLLegllapaavLGGELHLAHGLLLNALPLLLSLLGIALGY 511
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
37-573 2.25e-91

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 293.80  E-value: 2.25e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  37 FNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWD 116
Cdd:MTH00208   89 SNWLSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWE 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 117 GLGLVSYALVIYYQNVKSSNAGMLTA-LTNRIGDVALL--MSIAwMLNFGSWNY--VFYLEFPKDGYLGIVATFVVLAAI 191
Cdd:MTH00208  169 GVGFLSFLLISWWTTRNDANSSALQAvIYNRIGDIGIIlfLSLS-LINFNSWNLneILSLNNSNSFLINILLFGILLAAA 247
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 192 TKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDL--LKFLLVLSMMTMFMAGLGANFEYDLKKI 269
Cdd:MTH00208  248 GKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTSPLISNSPwfLSLCLILGSLTALFAASTAISQHDIKKI 327
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 270 IALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALC 349
Cdd:MTH00208  328 IAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALM 407
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 350 GLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMV 429
Cdd:MTH00208  408 GTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGT 487
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 430 IFGGSLLMWLMFPTPVFIcLPFYMKVFALGLIFLGMWVGYEaSKFYLTDKPIGLLYHDFSSFSANMWNLT-ILSTFGVSP 508
Cdd:MTH00208  488 IISGWFFSNFVFNLPPLT-LPLILKSLPLIVTIIGAAFSFS-FLLSLSSNPINSNFFSFLSNQWFFVNIShSIIISFSFF 565
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1999117240 509 LPMHLGSvylKGLDQGWLEYYGSQNLYKTLKGSSMFMQLLSRNHMKVFLMLTLFWLMFLFVSMFI 573
Cdd:MTH00208  566 TSLFGST---RTLDRGWSENIGPQGIGNTSSTLSKSYQLTQTGYIKQYLLSSTLLFLLILTLSLI 627
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
37-465 2.09e-90

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 290.14  E-value: 2.09e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  37 FNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWD 116
Cdd:MTH00004   66 WPWIFTTTFNIPISFKLDQYSLMFLPIALFVTWSILEFSTWYMASDPHITKFFKYLLIFLIAMLILITANNMFQLFIGWE 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 117 GLGLVSYALVIYYQNVKSSNAGMLTALT-NRIGDVALLMSIAWM-LNFGSWNyvFYLEFPKDGYLGIVATFVVLAAITKS 194
Cdd:MTH00004  146 GVGIMSFLLIGWWSGRAEANTAALQAIIyNRIGDIGLILSMAWLaMTLNTWE--IQQLFSPTQTPTLPLLGLILAATGKS 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 195 AQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF--SGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIAL 272
Cdd:MTH00004  224 AQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLLqnNQTALTICLCLGALTTLFAATCALTQNDIKKIIAF 303
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 273 STLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLP 352
Cdd:MTH00004  304 STSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTP 383
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 353 FLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMVIFG 432
Cdd:MTH00004  384 FLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILA 463
                         410       420       430
                  ....*....|....*....|....*....|....
gi 1999117240 433 GSLLMWLMFPT-PVFICLPFYMKVFALGLIFLGM 465
Cdd:MTH00004  464 GLLISSTILPTkTPPMTMPTTTKLAALIVTILGI 497
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
49-442 1.40e-89

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 288.41  E-value: 1.40e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  49 FTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALV-I 127
Cdd:TIGR01974  77 FGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIgF 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 128 YYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLN-FGSWNY--VFYLEFPKD-GYLGIVATFVVLAAITKSAQIPFSSWL 203
Cdd:TIGR01974 157 WYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWyFGTLNFqeVFALAPGAFfSALTLICLLLFIGAMGKSAQLPLHTWL 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 204 PAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF--SGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLM 281
Cdd:TIGR01974 237 PDAMEGPTPVSALIHAATMVTAGVYLVARTSPLFelSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYM 316
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 282 ISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKD 361
Cdd:TIGR01974 317 FLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKD 396
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 362 LIVES-MSMGYLnMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMVIFGGSLLMWLM 440
Cdd:TIGR01974 397 LILEAaFASGTH-SFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLF 475

                  ..
gi 1999117240 441 FP 442
Cdd:TIGR01974 476 EF 477
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
37-567 1.40e-88

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 285.26  E-value: 1.40e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  37 FNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWD 116
Cdd:MTH00066   64 FHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFIGWE 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 117 GLGLVSYALV-IYYQNVKSSNAGMLTALTNRIGDVALLMSIAW-MLNFGSWNYVFYLEFPKDGYLGIVAtfVVLAAITKS 194
Cdd:MTH00066  144 GVGIMSFLLIgWWHARADANTAALQAVLYNRVGDIGLILSMAWlAMNTNSWELQQIFLLNDNSTLPLLG--LILAAAGKS 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 195 AQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGD--LLKFLLVLSMMTMFMAGLGANFEYDLKKIIAL 272
Cdd:MTH00066  222 AQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLLENNqtALTICLCLGALTTLFTAACALTQNDIKKIVAF 301
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 273 STLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLP 352
Cdd:MTH00066  302 STSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTP 381
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 353 FLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMVIFG 432
Cdd:MTH00066  382 FLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIA 461
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 433 GSLLMWLMFPT-PVFICLPFYMKVFALGLIFLGMWVGYEASKFYLTDKPIGLLYhdfsSFSaNMWNLTILSTFGVSP-LP 510
Cdd:MTH00066  462 GLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKITSKTTPKTKMH----SFS-NLLAFFPTIIHRLSPkTN 536
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1999117240 511 MHLG-SVYLKGLDQGWLEYYGSQNLYKT----LKGSSMFMQLLSRNHMKVFLMLTLFWLMFL 567
Cdd:MTH00066  537 LNSGqNIATHLTDMTWYEKSGPKGLTNQqlppIKTITNIQTGLIKTYLTLFLITLLLMLILL 598
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
49-481 2.97e-86

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 280.12  E-value: 2.97e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  49 FTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALV-I 127
Cdd:PRK06590   78 FGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFAYLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIgF 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 128 YYQNVKSSNAGMLTALTNRIGDVALLMSIAWML-NFGSWNY--VFYLEFPKDGY----LGIVATFVVLAAITKSAQIPFS 200
Cdd:PRK06590  158 WYKKPSAGAAAMKAFIVNRVGDVGLALGIFLLFaEFGSLNYdeVFAAAPQFFGLgwsaLTLICLLLFIGAMGKSAQFPLH 237
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 201 SWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF--SGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQL 278
Cdd:PRK06590  238 TWLPDAMEGPTPVSALIHAATMVTAGVYLVARMSPLFelSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQL 317
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 279 GLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFY 358
Cdd:PRK06590  318 GYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFF 397
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 359 SKDLIVES-MSMGYLNMFVYVVFylSVGLTACYSFRLVYYCFTGEfNLLSSHGLSDEPGPMLESMGILIFMVIFGGSLLM 437
Cdd:PRK06590  398 SKDEILEAaFANGHINLFVAGLV--GAFLTAFYSFRLIFLVFHGK-EKEKIHHPHESPAVMTLPLIVLAVLSVFAGALIV 474
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1999117240 438 ------WLMFPTPVFIC----LPFYMKVFALGLIFLGMWVGYeasKFYLTDKPI 481
Cdd:PRK06590  475 ppflgvLPLTTELAHGEaehhLPVWVALLPLVVALAGIALAW---LLYLKKPTL 525
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
40-470 6.58e-85

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 275.96  E-value: 6.58e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  40 LSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLG 119
Cdd:MTH00108   69 MTIQTLKLSLSFKLDYFSMIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVG 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 120 LVSYALVIYYQNVKSSNAGMLTA-LTNRIGDVALLMSIAW-MLNFGSWNY--VFYLEfPKDGYLGIVAtfVVLAAITKSA 195
Cdd:MTH00108  149 IMSFLLIGWWYGRTDANTAALQAiLYNRIGDIGFILAMAWfLLNLNSWDLqqIFMLN-PNNSNLPLMG--LLLAATGKSA 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 196 QIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKFLLVL---SMMTMFMAgLGANFEYDLKKIIAL 272
Cdd:MTH00108  226 QFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFHPLMENNKTIQTLTLclgAITTLFTA-ICALTQNDIKKIVAF 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 273 STLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLP 352
Cdd:MTH00108  305 STSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMP 384
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 353 FLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGE--FNLLSshgLSDEPGPML-ESMGILIFMV 429
Cdd:MTH00108  385 FLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQprFPPLI---TINENNPLLiNPIKRLLLGS 461
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1999117240 430 IFGGSLLMWLMFPTPVF-ICLPFYMKVFALGLIFLGMWVGYE 470
Cdd:MTH00108  462 IFAGFLISNNIPPTTIPqMTMPLYLKLTALAVTILGFILALE 503
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
38-407 8.23e-78

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 257.45  E-value: 8.23e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  38 NILSLN-SVSLVFtvllDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWD 116
Cdd:MTH00137   74 NTLTFDiNISFKF----DHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWE 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 117 GLGLVSYALVIYYQNVKSSNAGMLTA-LTNRIGDVALLMSIAWML-NFGSWNY--VFYLefPKDGYLGIVATFVVLAAIT 192
Cdd:MTH00137  150 GVGIMSFLLIGWWYGRADANTAALQAvIYNRVGDIGLILAMAWMAtNLNSWEIqqIFAL--SKDFDLTLPLLGLILAATG 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 193 KSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKFLLVL---SMMTMFMA--GLGANfeyDLK 267
Cdd:MTH00137  228 KSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLSPLMENNQTALTTCLclgALTTLFTAtcALTQN---DIK 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 268 KIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFA 347
Cdd:MTH00137  305 KIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLA 384
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1999117240 348 LCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTG--EFNLLS 407
Cdd:MTH00137  385 LTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGhpRFNPLS 446
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
26-405 7.61e-72

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 241.52  E-value: 7.61e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  26 LMSTDLSYLLEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIIS 105
Cdd:MTH00020   51 LFNSSTTYIKLWRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTS 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 106 PNLVSILLGWDGLGLVSYALV-IYYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLN-FGSWNY--VFYLEFPKDGY-LG 180
Cdd:MTH00020  131 DNYLQLFIGWEGVGLCSYLLInFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDrFGSLDFssVFNMVVSAPSSdIT 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 181 IVATFVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKFLLV--LSMMTMFMAGL 258
Cdd:MTH00020  211 LICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtiVGSLTVFFAAT 290
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 259 GANFEYDLKKIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTC 338
Cdd:MTH00020  291 VGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTY 370
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1999117240 339 AYFNICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNL 405
Cdd:MTH00020  371 IFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNL 437
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
67-573 1.67e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 240.68  E-value: 1.67e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  67 ISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALV-IYYQNVKSSNAGMLTALTN 145
Cdd:MTH00210   92 VSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLInFWLTRIKANKAAIKAMLIN 171
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 146 RIGDVALLMSIAWMLN-FGSWNY----VFYLEFPKDGYLGIVATFVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSS 220
Cdd:MTH00210  172 RVGDIGLVLAMIMILKeFGTLEFstisSLLVTNINKESLTIICLLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAA 251
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 221 TLVTAGVYLLIRFNAAFSGD--LLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILCLGSHDLAFFHLL 298
Cdd:MTH00210  252 TMVTAGVFLIIRSGPLFEGSplALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLM 331
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 299 THALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYV 378
Cdd:MTH00210  332 NHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYW 411
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 379 VFYLSVGLTACYSFRLVYYCFTGEFNL--LSSHGLSDEPGPMLESMGILIFMVIFGGSLLMWLMFPTPVFICLPFYMKVF 456
Cdd:MTH00210  412 LGSFSALLTAFYSIRLIYLTFITNTNSkkEVFIGVHESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMI 491
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 457 ALGLIFLGM---WVGYEASKFYLTDKPIG---LLYHDFSSFSANMWNLT-ILSTFGVSPLPMHLGSVYLKGLDQGWLEYY 529
Cdd:MTH00210  492 PLLFSLLGAllaFVIYNSMVFLIKISRRGvsiRLYHVIYTFLNSAWQFNyVINHFIVKNIWKFGHLITYRIIDRGLLEII 571
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....
gi 1999117240 530 GSQNLYKTLKGSSmfmQLLSRNHMKVFLMLTLfwLMFLFVSMFI 573
Cdd:MTH00210  572 GPRGISKVLIKLT---QKISNLQSGMVFNYAL--IMIIFTTLFI 610
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
47-463 3.82e-66

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 224.41  E-value: 3.82e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  47 LVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALV 126
Cdd:MTH00095   37 LSLKFNFYFNSLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLV 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 127 IYYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLNFGSwnYVFYLEFpkdgYLGIVATFVVLAAITKSAQIPFSSWLPAA 206
Cdd:MTH00095  117 LFYNNWDSNSGAMNTALTNRIGDFFIFLFFSGFIFSSY--YFFSFSF----FSSSMILMLLLTSFTKSAQFPFSSWLPKA 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 207 MAAPTPVSALVHSSTLVTAGVYLLIRFNAA-FSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISIL 285
Cdd:MTH00095  191 MSAPTPVSSLVHSSTLVTAGLILLMNFSYLiLNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTF 270
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 286 CLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVE 365
Cdd:MTH00095  271 GSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILE 350
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 366 SMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMleSMGILIFMVIFGGSLLMWLMFPTPV 445
Cdd:MTH00095  351 LFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYSSSVLMNFL--SLMLVFFSVFFLWWLNFNLLNLPSL 428
                         410
                  ....*....|....*...
gi 1999117240 446 FICLPFYMKVFALGLIFL 463
Cdd:MTH00095  429 FLYLDFYVPLFYLFMIML 446
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
51-567 3.16e-61

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 214.44  E-value: 3.16e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  51 VLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQ 130
Cdd:MTH00032   76 LLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWT 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 131 N-VKSSNAGMLTALTNRIGDVALLMSIAWM------LNFGSWNYVFYLEFPKD-GYLG------------IVATFVVLAA 190
Cdd:MTH00032  156 TrIQANKAAIKAIVVNRVGDVGVILGMVLIyktigsLDFLTFNGGSVGSGIMDrGYYGggayesplapfaIIGILLLIGC 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 191 ITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKFLL--VLSMMTMFMAGLGANFEYDLKK 268
Cdd:MTH00032  236 IGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIitIFGALTAFFAATVGLVQNDLKK 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 269 IIALSTLSQLGLMISILCL-GSHDLAFFHLLTHALFKALLFMCAGAIIHSLG-NCQDIRYMGGLVSSMPLTCAYFNICNF 346
Cdd:MTH00032  316 VIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSF 395
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 347 ALCGLPFLSGFYSKDLIVE----SMSMGYLNMFVYVVFYLSVG--------------------------------LTACY 390
Cdd:MTH00032  396 SIMGLPYLTGFYSKDLILEltysGRNMGIPFGSSLLKIQGDIGikkddrgsiggpegypsrgsafafwlgtvaalLTAFY 475
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 391 SFRLVYYCF-----TGEFNLLSSHgLSDEPGPMLESMGILIFMVIFGGSLLMWLMFPT-------PVFICLPFYMKVFAL 458
Cdd:MTH00032  476 SIRLVYITFiispnSPKESLISSH-INIVDKRVLTVLSLLCFGAIFVGYLIQDILIGDiehpivpPLIKVMPTLMGLFGM 554
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 459 GLIFLGMWVGYEASKFYLTDKPIGLLYHDFSSFSANMW--NLTILSTFGVSPLPMHLGSVYlKGLDQGWLEYYGSQNL-Y 535
Cdd:MTH00032  555 GLCLWAQKGTREGELYWGFDPIGPSFLLSIYSFLGGAWqgDHLINKLVAIPLFSFGHWGIY-KTLDRGWLELFGPQGIsT 633
                         570       580       590
                  ....*....|....*....|....*....|..
gi 1999117240 536 KTLKGSSMFMQLLSRNHMKVFLMLTLFWLMFL 567
Cdd:MTH00032  634 IALRVSQFISNLQSGVISRYALVLLSFTIIFL 665
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
53-403 1.92e-59

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 209.49  E-value: 1.92e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  53 LDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALV-IYYQN 131
Cdd:PRK07376   89 IDPLGAVMLVLVTTVALLVMIYSDGYMAHDPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVgFWYDR 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 132 VKSSNAGMLTALTNRIGDVALLMSIawmLNFGSWNYVFYLEFPKDGYLGIVAT-------------FVVLAAITKSAQIP 198
Cdd:PRK07376  169 KGAADAAQKAFVVNRVGDFGLLLGI---LGLFWATGSFDFDGIADRLSELVSSgavsgwlalllciLVFLGPMAKSAQFP 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 199 FSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSG--DLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLS 276
Cdd:PRK07376  246 LHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEQfpAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTIS 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 277 QLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGN--------CQDIRYMGGLVSSMPLTCAYFNICNFAL 348
Cdd:PRK07376  326 QLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAI 405
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1999117240 349 CGLPFLSGFYSKDLIVESMSMGylNMFVYVVFYLSVGLTACYSFRLVYYCFTGEF 403
Cdd:PRK07376  406 SGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLTFEGEF 458
PRK12650 PRK12650
DUF4040 family protein;
43-400 6.46e-55

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 200.27  E-value: 6.46e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  43 NSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVS 122
Cdd:PRK12650   67 NGVDVNLALRADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSFYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLAS 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 123 YALVIyyQNVKSSNAG-MLTALTNRIGDVALLMSIAWMLN-FGSWNYVFYLEFP----KDGYLGIVATFVVLAAITKSAQ 196
Cdd:PRK12650  147 FFLIA--RSGSGGEAGsIRTLILTFFGGLTLLAAVAIAATqTGTTSLSGILHSDvwaeKPGLTTVVAVLIAVAAFTKSAQ 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 197 IPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLL--KFLLVLSMMTMFMAGLGANFEYDLKKIIALST 274
Cdd:PRK12650  225 FPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVwnWLLIIVGMITALMGAVFAVQKTDLKKLTAYST 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 275 LSQLGLMISILCLGSH---DLAFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALCGL 351
Cdd:PRK12650  305 VSQLGWIVATIGVGTPfalTAAVVHTLAHALFKSSLFMLIGVVDHQAGT-RDIRRLGSLWRRMPFTFVSVTIAALSMAAV 383
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1999117240 352 PFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTA----CYSFRLVYYCFT 400
Cdd:PRK12650  384 PPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAvftfAYSARLVLGAFV 436
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
105-380 2.47e-52

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 180.59  E-value: 2.47e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 105 SPNLVSILLGWDGLGLVSYALVIYY-QNVKSSNAGMLTALTNRIGDVALLMSIAWMLNFGSWNYVFYLEFPKDGYLG--- 180
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNssg 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 181 --IVATFVVLAAITKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFN---AAFSGDLLKFLLVLSMMTMF 254
Cdd:pfam00361  81 llLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSllyLPSSPFIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 255 MAGLGANFEYDLKKIIALSTLSQLGLMISILCLG---SHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLV 331
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1999117240 332 SSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVE-SMSMGYLNMFVYVVF 380
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAaAVAASWIFLVLAGVV 289
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
44-399 2.23e-49

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 183.97  E-value: 2.23e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  44 SVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMM-GDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVS 122
Cdd:PRK12644   63 SLGLDLAFRLDALAALMSLLVLGVGALVLLYCARYFDdDEPRLGRFAAELVAFAGAMFGLVTSDNLLLLYVFWELTTVLS 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 123 YALVIYYQNVKSSNAGMLTALT-NRIGDVALLMSIAWMLNF-GSWNYVFYLEFPKDGYLGIVATFVVLA-AITKSAQIPF 199
Cdd:PRK12644  143 FLLIGHYAERAASRRAALQALLvTTAGGLAMLVGIIILGQAaGTYRLSELLADPPTGPAVSVAVVLILVgALSKSAIVPF 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 200 SSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSgDLLKF---LLVLSMMTMFMAGLGANFEYDLKKIIALSTLS 276
Cdd:PRK12644  223 HFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFA-DVPVWrptVLVLGLATMLLGGWRALRQHDLKLILAYGTVS 301
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 277 QLGLMISILCLGSHDLAFFHL---LTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALCGLPF 353
Cdd:PRK12644  302 QLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHSTGT-RDIRKLSGLGRRQPVLAVVAALAAASMAGLPP 380
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1999117240 354 LSGFYSKDLIVESM----SMGYLNMFVYVVFYLSVGLTACYSFRLVYYCF 399
Cdd:PRK12644  381 LLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLRFLWGAF 430
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
49-397 3.25e-48

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 173.41  E-value: 3.25e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  49 FTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIY 128
Cdd:COG0651    70 IVLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVAL 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 129 YQNVKSSNAGMLTALTNRIGDVALLMSIAWM-LNFGSWNYV---FYLEFPKDGYLGIVATFVVLAAITKSAQIPFSSWLP 204
Cdd:COG0651   150 GGTKEALRAGLKYLILNLVGSALFLLGVGLLyGATGTLNMAdlaARLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLP 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 205 AAMA-APTPVSALVhSSTLVTAGVYLLIR-----FNAAFSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQL 278
Cdd:COG0651   230 DAYPaAPSPVSALL-SGLLTKVGVYAILRvltllFGADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQI 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 279 GLMISILCLGSHDL---AFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLS 355
Cdd:COG0651   309 GYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERATGT-RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLS 387
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1999117240 356 GFYSKDLIVESMsMGYLNMFVYVVFYLSVGLTACYSFRLVYY 397
Cdd:COG0651   388 GFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
44-402 3.97e-48

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 178.96  E-value: 3.97e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  44 SVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSY 123
Cdd:PRK12647   53 SLGVNLSFLLDGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSF 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 124 ALVIYYQNVKSSNAGMLTAL-TNRIGDVALL------------MSIAWMLNFGswnyvfylEFPKDGYLGIVATFVVLA- 189
Cdd:PRK12647  133 LLIGFNHEREAARRAALQALlVTGGGGLALLaglillgnvtgtYSLSELLASG--------DVIREHPLYLAILLLVLGg 204
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 190 AITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKF--LLVLSMMTMFMAGLGANFEYDLK 267
Cdd:PRK12647  205 AFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPLWQtiLPLFGGLTMLTGALLAVRQTDLK 284
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 268 KIIALSTLSQLGLMISILCLGSHDL---AFFHLLTHALFKALLFMCAGAIIHSLGnCQDIRYMGGLVSSMPLTCAYFNIC 344
Cdd:PRK12647  285 LILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGALFMVAGIIDHETG-TRDITKLGGLRRAMPITAAAALLA 363
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1999117240 345 NFALCGLPFLSGFYSKDLIVES-MSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGE 402
Cdd:PRK12647  364 ALSMAGLPPLFGFLAKELIYEAlLEAPLWSLILTVAAVLGNALMVAVAFLVGIKPFLGK 422
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
31-394 7.76e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 174.68  E-value: 7.76e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  31 LSYLLEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVS 110
Cdd:MTH00063   21 VSSSVSLNFLSFGGYSWLINFDFDYVTFGVLLMLLICFYYSLLYTFHYFGGSYASFLLNKLIVLFVLVMGILVLTGDFLS 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 111 ILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLNFGSWNYVFYLefpkdgylgivatFVVLAA 190
Cdd:MTH00063  101 TLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVSSRFGDVCLFLLIGLSCWGGSGSFLCCL-------------FFFLIV 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 191 ITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNA-AFSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKI 269
Cdd:MTH00063  168 FTKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYlLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKI 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 270 IALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALC 349
Cdd:MTH00063  248 VALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNCVYSSILYGSWNLFYLFLLVLGLS 327
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1999117240 350 GLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRL 394
Cdd:MTH00063  328 GVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRL 372
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
44-442 2.12e-47

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 177.35  E-value: 2.12e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  44 SVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSY 123
Cdd:TIGR00940  64 ELGLNFTLYMDGLALLFSLLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIVSF 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 124 ALVIYY-QNVKSSNAGMLTALTNRIGDVALLMSIAWM-LNFGSWNYVFYLE----FPKDGYLGIVATFVVLAAITKSAQI 197
Cdd:TIGR00940 144 LLISYWhHRAHSRYGAQKSLTITVFGGLAMLGGLILLgKITGSFSIDAVIAsadaIRNSPLFGTAMVLVLLGAFTKSAQF 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 198 PFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKFLLV--LSMMTMFMAGLGANFEYDLKKIIALSTL 275
Cdd:TIGR00940 224 PFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTEAWFWIVglAGLITLLWGSYFAIFQQDLKGILAFSTI 303
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 276 SQLGLMISILCLGSHDL----------------AFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCA 339
Cdd:TIGR00940 304 SQLGLIMVLLGLGSPSYhyqgddskiyalaavaAVFHLINHATFKGSLFMAAGIIDHETGT-RDIRKLGGLFHIMPITFT 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 340 YFNICNFALCGLPFLSGFYSKDL----IVESMSMGYLNM------FVYVVFYLSVgLTACYSFRLVYYCFTGEFNLLSSH 409
Cdd:TIGR00940 383 LAMIASAAMAGVPPFNGFLSKEMffaeAITAHLVNPFDTvtlgylFPYVATVASV-FTFVYSLRFIHGVFFGRPKPEDLP 461
                         410       420       430
                  ....*....|....*....|....*....|...
gi 1999117240 410 GLSDEPgpmleSMGILIFMVIFGGSLLMWLMFP 442
Cdd:TIGR00940 462 RKPHEP-----PRWMLASPDILVLLVLVFGLFP 489
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
47-401 5.99e-46

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 173.84  E-value: 5.99e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  47 LVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALV 126
Cdd:PRK12648   68 LNLSLRLDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSFLLLFMGAMLGIVLSGNLILLVVFWELTSLSSFLLI 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 127 IYYQNVKSSNAGMLTALT-------NRIGDVALLMSIAwmlnfGSWNYVFYL---EFPKDGYLGIVA-TFVVLAAITKSA 195
Cdd:PRK12648  148 GYWHHRADARRGARMALTvtgagglALLAGVLLLGHIV-----GSYDLDVVLaagDLIRAHPLYPPAlVLILLGAFTKSA 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 196 QIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKFLLVLS--MMTMFMAGLGANFEYDLKKIIALS 273
Cdd:PRK12648  223 QFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPVLAGTEEWFWIVGGagLITLLLGAYFALFQHDLKGLLAYS 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 274 TLSQLGLMISILCLGShDLA----FFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALC 349
Cdd:PRK12648  303 TISHLGLITLLLGLGS-PLAavaaIFHIINHATFKASLFMAAGIIDHETGT-RDMRRLSGLRRLMPITATLAMVAAAAMA 380
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1999117240 350 GLPFLSGFYSKDL----IVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTG 401
Cdd:PRK12648  381 GVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLRFIHDVFFG 436
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
49-403 7.35e-43

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 163.94  E-value: 7.35e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  49 FTVLLDWMSLLFMSFVLFISAVVINYSEEYM-MGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVI 127
Cdd:PRK12645   72 FTLYVDGLSLLFALLITGIGSLVVLYSIYYLsKKKEQLGNFYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLIS 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 128 YYQNVKSSNAGMLTALTNRI-GDVALL------------MSIAWMLNFGSwnyvfylEFPKDGYLGIVATFVVLAAITKS 194
Cdd:PRK12645  152 YWYEREASRYGAQKSMLITVfGGLSMLggfillyimtgsFSIREMIANAD-------EIQNSPLFIPAMILILLGAFTKS 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 195 AQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKFLLVLS--MMTMFMAGLGANFEYDLKKIIAL 272
Cdd:PRK12645  225 AQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAGSQVWFWTVTLvgLITLFWGSLNAVKQTDLKGILAF 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 273 STLSQLGLMISILCLGSHDL----------------AFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPL 336
Cdd:PRK12645  305 STVSQLGLIMSLLGIGAASLhyqgddskiyaaaitaAIFHLINHATFKGSLFMIVGIVDHETGT-RDIRKLGGLMTIMPI 383
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1999117240 337 TCAYFNICNFALCGLPFLSGFYSKDLIVESM---------SMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEF 403
Cdd:PRK12645  384 TFTIALIGALSMAGLPPFNGFLSKEMFFESMlnateanlfSLDTWGVLFPVIAWVASVFTFVYSIIFIFKTFFGKY 459
ndhF CHL00025
NADH dehydrogenase subunit 5
43-404 1.44e-42

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 162.75  E-value: 1.44e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  43 NSVSLVFTVLLDWMSLLfMSFVlfISAV---VINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLG 119
Cdd:CHL00025   79 NDFSLEFGYLIDPLTSI-MLIL--ITTVgilVLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVG 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 120 LVSYALV-IYYQNVKSSNAGMLTALTNRIGDVALLMSIawmLNF----GSwnyvfyLEF-----------PKDG----YL 179
Cdd:CHL00025  156 MCSYLLIgFWFTRPIAANACQKAFVTNRVGDFGLLLGI---LGFywitGS------FEFrdlfeifnnliYNNEvnllFA 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 180 GIVATFVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRfnaafsgdLLKFLLVLSMMTMFMAGLG 259
Cdd:CHL00025  227 TLCAFLLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR--------LLPLFIVIPYIMNLISLIG 298
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 260 ----------ANFEYDLKKIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSLG--------NC 321
Cdd:CHL00025  299 iitallgatlALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMEpivgyspdKS 378
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 322 QDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVeSMSMGYLNMFVYVVfYLSVGLTACYSFRLVYYCFTG 401
Cdd:CHL00025  379 QNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL-NDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFEG 456

                  ...
gi 1999117240 402 EFN 404
Cdd:CHL00025  457 HLR 459
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
37-430 8.11e-42

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 157.06  E-value: 8.11e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  37 FNILSLNSVSLvFTVLLDWMSLLFMSFVLFISAVVINYSEEYMM-------GDVNLTRFILLVVMFVLSMMLLIISPNLV 109
Cdd:PRK06525   58 LTLVNLGDVAL-FGLVIDPVSVLIGFVVVLLGLLVTLYSTGYMSpgnrehpVHEGTGRYYAFLLLFIGAMAGLVYSSTLL 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 110 SILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAWMLNFGSWNYVFYLEFPKDGYLGIVATFVVLA 189
Cdd:PRK06525  137 GLLLFFEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLHGSLKYLVFLGILFA 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 190 AITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR---FNAAFSGDLLKFLLVLSMMTMFMAGLGANFEYDL 266
Cdd:PRK06525  217 AWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARaiqSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDM 296
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 267 KKIIALSTLSQLGLM---ISILCLGSH---DLAFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAY 340
Cdd:PRK06525  297 KRLLAYSTITQLGYMffgLSLAILGSRlalEGSIAYIFNHAFAKSLFFLVAGALSYSCGT-RLLPRLRGVLKKLPLVGVG 375
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 341 FNICNFALCGLPFLSGFYSKDLIVES---MSMGYLNMFVYVVFYL--SVGlTACYSFRLVYYCFTGEFNLLSSHGlSDEP 415
Cdd:PRK06525  376 FCVAALAITGVPPFNGFFSKFPIFAAgfeLSVEYWILLPAMVLLLieSVA-SFAWFLRWFGRVVFGEPSEAVADA-APLP 453
                         410
                  ....*....|....*
gi 1999117240 416 GPMLESMGILIFMVI 430
Cdd:PRK06525  454 GSMKLVLIVLIVMSL 468
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
42-433 8.61e-42

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 160.76  E-value: 8.61e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  42 LNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLV 121
Cdd:PRK12649   67 LPSAGVEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSIT 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 122 SYALVIYYQNVKSSNAGMLTALTNRIGDvALLMSIAWML---NFGSWNYVFYLEFPK--------DGYLgIVATFVVLAA 190
Cdd:PRK12649  147 SFMLIGYWRHRPESVYGATKSLLITAGG-GLFMFAGFLLlhvITGTYDIATILQDSElienikghPLFL-ITLILIFIGA 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 191 ITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKFLLV--LSMMTMFMAGLGANFEYDLKK 268
Cdd:PRK12649  225 AAKSAQGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTEAWFILVsgTGMITMVLAGFLAFRQTDIKA 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 269 IIALSTLSQLGLMISILCLGSHD-------LAFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYF 341
Cdd:PRK12649  305 ILAYSTISQLAYLMTMYGYTTYHepglgvaAATFHLLNHATFKACLFLVAGIVAHEAAT-RDIRKLGGLRKEMPITFIVA 383
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 342 NICNFALCGLPFLSGFYSKDLIVE-SMSMGYLNMFVYVVFYLSVG-----LTACYSFRLVYYCFTGE--FNLLSSHgLSD 413
Cdd:PRK12649  384 SIAALAMAGIPPLNGFLSKEMFYEtSVEMGALIGGPFTIIIPAVAvlggvFTFAYSIKLIDGIFLGErtHDHLPHH-IHE 462
                         410       420
                  ....*....|....*....|
gi 1999117240 414 EPGPMLESMGILIFMVIFGG 433
Cdd:PRK12649  463 APYVMLIPAAFLAGLVILFG 482
PRK12646 PRK12646
DUF4040 family protein;
35-404 7.17e-39

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 152.22  E-value: 7.17e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  35 LEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYM-MGDVNLTRFILLVVMFVLSMMLLIISPNLVSILL 113
Cdd:PRK12646   58 LSTSIPWMKTLDINLDLRLDGLSLMFSLIISLIGIAVFFYATQYLsSRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYV 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 114 GWDGLGLVSYALVIYYQNVKSSNAGMLTA-LTNRIGDVALLMSIAWMLNFGSWNYVFYLEFPKDGY----LGIVATFVVL 188
Cdd:PRK12646  138 FWELTSVSSFLLISYWYNNGDSQFGAIQSfMITVFGGLALLVGFIMLYIMTGTNNITEILGQADHIknhgLFIPMIFMFL 217
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 189 -AAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNA--AFSGDLLKFLLVLSMMTMFMAGLGANFEYD 265
Cdd:PRK12646  218 lGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPllGLSNMYIYIVTFVGLITMLFGSITALKQWD 297
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 266 LKKIIALSTLSQLGLMISILCLG------SHD-----------LAFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMG 328
Cdd:PRK12646  298 LKGILAYSTISQLGMIMAMVGIGggyaqhQQDaiasiyvfvlfAALFHLMNHAIFKCALFMGVGIIDHEAGT-RDIRILS 376
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 329 GLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVESMSMG-----YLNMFVYVVFYLSVG---LTACYSFRLVYYCFT 400
Cdd:PRK12646  377 GMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTgqlsqFSLISMIIIVFIGVIasiFTFTYALYMVKEVFW 456

                  ....
gi 1999117240 401 GEFN 404
Cdd:PRK12646  457 GKYD 460
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
50-433 6.18e-37

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 143.48  E-value: 6.18e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  50 TVLLDWMSLLFMSFVLFISAVVINYSeeYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYY 129
Cdd:PRK08375   72 ELRADSLSALFLLVTSILAIAALLYA--IGYGEHRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAMG 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 130 QNVKSSNAGMLTALTNRIGDVALLMSIAWM------LNFGSWNYVFylefPKDGYLGIVATFVVLAAITKSAQIPFSSWL 203
Cdd:PRK08375  150 GDRRALAAARKYLIVGLIGSTFLLIGVGLLygvtgtLNMADLAGAL----AENPTVVTAFGFVLLALALKAAVFPLHTWL 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 204 PAAMAAPTPVSALVHSSTLVTAGVYLLIRF-------NAAFSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLS 276
Cdd:PRK08375  226 PRAYPAAPPVVTALLSGLVTKVAVYALIRIyftvfggDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVS 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 277 QLGLMISILCLGSHDL---AFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALCGLPF 353
Cdd:PRK08375  306 QMGYILLGLALLTPLAlaaGLLHLLHHALMKGALFLAAGAIEVTYGT-RRLSELSGLGRRMPLTAAAFAVASLSLIGVPP 384
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 354 LSGFYSKDLIVESmSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMVIFGG 433
Cdd:PRK08375  385 TSGFVSKWYLVVG-AVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAPKQEAPLGMLAPSLALALLSLLLG 463
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
390-571 5.83e-36

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 132.67  E-value: 5.83e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 390 YSFRLVYYCFTGEFNLLSSHGLSDEPGPMLESMGILIFMVIFGGSLLMWLMFPTPVFICLPFYMKVFALGLIFLGMWVGY 469
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 470 EASKFyLTDKPIGLLYHDFSSFSANMWNLTILSTFGVSPLPMHLGSVYLKGLDQGWLEYYGSQNLYKTLKGSSMFMQLLS 549
Cdd:pfam06455  81 ELSNL-SNKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQ 159
                         170       180
                  ....*....|....*....|..
gi 1999117240 550 RNHMKVFLMLTLFWLMFLFVSM 571
Cdd:pfam06455 160 KGLIKIYLLSFLLWLLLLLLLI 181
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
45-366 1.29e-29

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 123.69  E-value: 1.29e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  45 VSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEY---MMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLV 121
Cdd:PRK08667   67 PGLDITFHIDRLAAFFIILIGLVSLCVAIYSLGYnehMSSNERANLLSALTALFILSMLGVVASANTFSFLFFWEIMALS 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 122 SYALVIY-YQNVKSSNAGMLTALTNRIGDVAL-LMSIAWMLNFGSWnyvfylEFPKDGYLGIVATFVVLAAI----TKSA 195
Cdd:PRK08667  147 SFFLVMNdYQEEETQRAGIFYFVMTQLSTVFLmLGIIVLFIQTGSF------ELSPLGASAGILSLVFLLLFlgfgIKAG 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 196 QIPFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRFNAAFSGDLLKFLLVLSMMTMFMAGLGANF---EYDLKKIIA 271
Cdd:PRK08667  221 IIPFHKWLPYAHpASPSNVSALM-SGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYalkEHDLKGLLA 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 272 LST-------LSQLGLMISILCLGSHDLAF-------FHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLT 337
Cdd:PRK08667  300 YSSienigiiLMGIGLYVIFGVYGLDTLALlalggalFHSLNHALFKSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYT 378
                         330       340
                  ....*....|....*....|....*....
gi 1999117240 338 CAYFNICNFALCGLPFLSGFYSKDLIVES 366
Cdd:PRK08667  379 SALFLVGAVSIAALPPFNGFASELLLYES 407
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
47-366 7.27e-27

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 115.37  E-value: 7.27e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  47 LVFTVLLDWMSLLFMSFVLFISAVVINYSEEYM--MGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYA 124
Cdd:PRK06521   72 LPFHLRLDALSAFFLLVISLLGAAASLYSLGYFreYEGKGPGAMGFFYNLFLASMVLVLLADDAFSFLVAWETMSLSSWF 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 125 LVIYYQNVKSS-NAGMLTALTNRIGDVALLMSIaWMLNFGSWNYVF--YLEFPKDGYLGIVA-TFVVLAAITKSAQIPFS 200
Cdd:PRK06521  152 LVIANHREAEIrRAGFLYLLMAHAGALAILLAF-GLLARESGSYDFaaMRAAHLSPFWASLVfLLALFGFGAKAGLVPLH 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 201 SWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRFNAAFSGDLLK----FLLVLSMMTMFMAGLGANFEYDLKKIIALSTL 275
Cdd:PRK06521  231 VWLPRAHpAAPSHVSALM-SGVMLKVAIYGILRVVFDLLGAPGWwwgvLVLALGAISAVLGVLYALAEHDLKRLLAYSTI 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 276 SQLGLM-----ISILCLGSHD-----LAF----FHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYF 341
Cdd:PRK06521  310 ENIGIIfvglgLAMVFIAYGMpllaaLALtaalYHLLNHALFKSLLFLGAGAVLHATGT-RDMEKLGGLIRRMPWTAWAF 388
                         330       340
                  ....*....|....*....|....*
gi 1999117240 342 NICNFALCGLPFLSGFYSKDLIVES 366
Cdd:PRK06521  389 LIGCLAISALPPLNGFVSEWLLLQS 413
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
35-359 1.65e-25

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 110.77  E-value: 1.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  35 LEFNILSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLG 114
Cdd:PRK07390   69 LSFPWLQVADLDLSLSLEISPVTLGALELITGLSLLAQIYALGYLEKDWGLARFFALLGFFEAAMSGLALSDSLFFSYVL 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 115 WDGLGLVSYALVIYYQNVKSSNAGMLTA-LTNRIGDVALLMSIAWMLNF-GSWNYVFYLEFPKDGYL-GIVATFVVLAAI 191
Cdd:PRK07390  149 LEILTLSTYLLVGFWYAQPLVVTAARDAfLTKRVGDLLLLMGVVALSPLaGTLNFSDLAAWAATANLdPLTATLLGLALI 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 192 T----KSAQIPFSSWLPAAMAAPTPVSALvHSSTLVTAGVYLLIRFNA--AFSGDLLKFLLVLSMMTMFMAGLGANFEYD 265
Cdd:PRK07390  229 AgptgKCAQFPLHLWLDEAMEGPNPASIL-RNSVVVATGAWVLIKLQPvlALSPVALTVLIVIGTVTAIGASLVAIAQID 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 266 LKKIIALSTLSQLGLMISILCLGSHDLAFFHLLTHALFKALLFMCAGAIIHSlGNCQDIRYMGGLVSSMPLTCAYFNICN 345
Cdd:PRK07390  308 IKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGS 386
                         330
                  ....*....|....
gi 1999117240 346 FALCGLPFLSGFYS 359
Cdd:PRK07390  387 AGLVALLPLGGFWA 400
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
45-433 2.26e-25

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 109.80  E-value: 2.26e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  45 VSLVFTVllDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYA 124
Cdd:PRK08376   82 IRIIWEV--DLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYA 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 125 LVIYYQNV-KSSNAGMLTALTNRIGDVALLMSIAwmLNFGSWN-----YVFYLEFPKDGYLGIVA-TFVVLAAITKSAQI 197
Cdd:PRK08376  160 LVAFRNDTwEAIEAGIKYMFVGSLASSMVLLGIA--LLYGQYGtlnmaYLAVKMSENPTVVAKIAlALFIAGLAMKSGAV 237
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 198 PFSSWLPAAM-AAPTPVSALVHSSTLvtAGVYLLIRFNAAFSGDLLK------FLLVLSMMTMFMAGLGANFEYDLKKII 270
Cdd:PRK08376  238 PVHMWLPDAYpAAPSSISAMLLVIKQ--AGLYALARVLFSIYGPAINlatvgwVIIILGCLTMFVGVAMAVVQKDVKRLL 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 271 ALSTLSQ-----LGLMISILCLGSHDL----------AFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMP 335
Cdd:PRK08376  316 AYHSVSQigymlLGLGVGLAALGDPAMasygeialagGIYHIVNHALYKALLFLTAGAVIYETGT-RNLNELGGLARTMP 394
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 336 LTCAYFNICNFALCGLPFLSGFYSKDLIVESMSMgyLNMFVYVVFYLSVGLTACYSFRLVYYCFTGEfNLLSSHGLSDEP 415
Cdd:PRK08376  395 KTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVLTLASFVKVFHTAFFGP-PSEKVMNVKEPP 471
                         410
                  ....*....|....*...
gi 1999117240 416 GPMLESMGILIFMVIFGG 433
Cdd:PRK08376  472 KPMLVPMLILAIAIIGMG 489
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
56-312 7.50e-25

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 108.25  E-value: 7.50e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  56 MSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQNVKss 135
Cdd:PRK08168   70 LGLVMAALVQLLGWVIGRFSHRYLQGEPGQRRYVRALAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRP-- 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 136 nAGMLTA----LTNRIGDVALLMSIA-WMLNFGSWN----YVFYLEFPKDGYLGIVATFVVLAAITKSAQIPFSSWLPAA 206
Cdd:PRK08168  148 -FARLAAhkkfIADRLAELLLLAAAAlAYLEVGSLSlsalWAHLAAQGASPSLQAAALLLVLAVILKTAQLPVHGWLIQV 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 207 MAAPTPVSALVHSStLVTAGVYLLIRF----NAAFSGDLLkfLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMI 282
Cdd:PRK08168  227 MEAPTPVSALLHAG-VVNLGGFVLIRFapllEQAPPARWL--LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFML 303
                         250       260       270
                  ....*....|....*....|....*....|
gi 1999117240 283 SILCLGSHDLAFFHLLTHALFKALLFMCAG 312
Cdd:PRK08168  304 LECGLGLYELALLHLVAHSLYKAHAFLSAS 333
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
108-451 8.58e-25

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 108.44  E-value: 8.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 108 LVSILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAW-MLNFGSWNYVfylefPKDGYLGIVATFV 186
Cdd:PRK12668  115 LLTLFVFWELMAFTSTFLVWARGTKAAVRAGFRYLLVHVLGGVLLLAGILLhYAETGSFAFG-----AIAGLGGTAAWLI 189
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 187 VLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRfnaAFSG-DLLKFLLVLsmMTMFMAGLgANFEYD 265
Cdd:PRK12668  190 LIGFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALAR---AFPGtELLIYIGAA--MAVYGVFF-ALLEND 263
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 266 LKKIIALSTLSQLGLMISILCLGSH---DLAFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFN 342
Cdd:PRK12668  264 LRRLLSYHIVSQVGYMVAGIGIGTAlaiNGAVAHAFNHILYKGLLFMSAGAVLYRTGT-EKLTELGGLYRSMPLTALFCL 342
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 343 ICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVGLTACYSFRLVYYCFtgeFNLLSSHGLSDEPGPMLESM 422
Cdd:PRK12668  343 VGALSISAFPLFSGFVSKSMIISAAGEDHYVWVWLLLLLASAGTFLHFGIKLPYFAF---FGGDSGLRVKDAPRNMLVAM 419
                         330       340
                  ....*....|....*....|....*....
gi 1999117240 423 GILIFMVIFGGsllmwlMFPTPVFICLPF 451
Cdd:PRK12668  420 GIAAFLCIAIG------VYPQALYALLPY 442
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
53-399 3.90e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 106.05  E-value: 3.90e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  53 LDWMSLLFMSFVLFISAVVINYSEEYMMGDV--NLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQ 130
Cdd:PRK06589   81 LEPLGLIFLLLIGFLWICALLYTPKYLAINNidSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTR 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 131 NVKSSNAGM--LTALTNRIGDVALLMSIAWMLNFGSWNYVFYLEFPKDGYLGIVATFVVLaaITKSAQIPFSSWLPAAMA 208
Cdd:PRK06589  161 NNISLSGGYkyLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYG--IAKTAIFPVHSWLPAAMV 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 209 APTPVSALVHSSTLVTAGVYLLIR-----FNAAFSGDLLK---FLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGL 280
Cdd:PRK06589  239 AHYPVSALLHAVIVVKTGLFCIYKillyiFGLSYLQRIFAefnWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSL 318
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 281 MI---SILCLGSHDLAFFHLLTHALFKALLFMCAGAIIhSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGF 357
Cdd:PRK06589  319 ALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGSIY-SLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGF 397
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1999117240 358 YSKDLIVESMS---MGYLNMFVYVVFYLSVGLTACYSFRLVYYCF 399
Cdd:PRK06589  398 ISKFLILLAASeqnQPWLSIIVMLVVIASSILSALYLLKILSSIY 442
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
63-432 1.30e-22

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 102.00  E-value: 1.30e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  63 FVLFISAVVINYSEEYMM--GDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYaLVIYYQNVKSSNAGML 140
Cdd:PRK08668   73 FFAMISLLVIFSVAFFMVseKTKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLK 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 141 TALTNRIGDVALLMSIAWMLN-FGSWNYV----FYLEFPKDGYLGIVATFVVLAAITKSAQIPFSSWLPAAMA-APTPVS 214
Cdd:PRK08668  152 YFVLSAIGAYAMLYAIFLIYAkTGTFDFAdisqGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSeAPQSFS 231
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 215 AlVHSSTLVTAGVYLLIRFNAAFSG-----DLLKF---------LLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLG- 279
Cdd:PRK08668  232 A-VLSGQLSKLGAYGFLLVLYVLPGtklfsEFGTYrgvplfnyiLAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGy 310
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 280 LMISILCLGSHDLA--FFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGF 357
Cdd:PRK08668  311 ILVGLGLGTSLGFAggLFHVFNHALFKGLFFLIFAAVIYRTGT-TKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGF 389
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1999117240 358 YSKDLIVESMSMGYLNMFVYVVFYLSVGLTAcYSFRLVYYCFTGEfnLLSSH-GLSDEPGPMLESMGIL-IFMVIFG 432
Cdd:PRK08668  390 ASKWLIFEALISKGMPITAFMAFFGSIGSFL-YVFRPLAGVFLGQ--LPSDHkDVKEAPLPMLIPMAILvLLNVVFG 463
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
53-402 4.42e-22

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 99.66  E-value: 4.42e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  53 LDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQNV 132
Cdd:PRK12667   80 VDLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDR 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 133 KSS-NAGMLTALTNRIGDVALLMSIAWMLN-FGSWN----------YVFYLEFPKDGYLGIVATFVVLAAI----TKSAQ 196
Cdd:PRK12667  160 GDAvEAAIKYALIGAVGTTLYFLALAFLYAtFGTLNmadlsakirgLSFPLTGGLAGNPPLALGVALALALwaftIKAAI 239
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 197 IPFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRF----------NAAFSGDLLKFLLVLSMMTMFMAGLGANFEYD 265
Cdd:PRK12667  240 FPNHFWLPDAHpAAPSPVSAML-SGLVVNVGAYAIIRFlytifgispsLIDFRAALSPILIILGAVSAIIGALMMVVQKD 318
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 266 LKKIIALSTLSQLGLMISILCLGSH---DLAFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFN 342
Cdd:PRK12667  319 VKRLLAYSTISHMGYIFMGIGIGTQlglAAALFHIINHAIAKSLLFLASGVFIHAAGT-RDIDELAGLGRKMPIASFAFL 397
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 343 ICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFYLSVgLTACYSFRLVYYCFTGE 402
Cdd:PRK12667  398 IGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASA-ISLVGYFRAWYSLFFGK 456
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
60-446 1.17e-21

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 98.30  E-value: 1.17e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  60 FMSFVLFISAVVINYSEEYMMGDVN---LTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQNVKSSN 136
Cdd:PRK08377   79 FAALFVLIIAIVSFIMSIFSLKAVEvepIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAE 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 137 AGMLTALTNRIGDVALLMSIAWMLN-FGSWNYVFYLEFPK--DGYLGIVA-TFVVLAAITKSAQIPFSSWLPAA-MAAPT 211
Cdd:PRK08377  159 ASMKYIVLGGIGSSFFLIGVALIYGaTGTLNMAHIAQLAGtiDPTVAQVGlALLIFGLAVEAELFPLNAWAPDAyQAAPH 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 212 PVSALVhSSTLVTAGVYLLIR-----FNAAFSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILC 286
Cdd:PRK08377  239 PITVMF-SAFVVKAGLYAMARilylmQNANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALA 317
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 287 LGSH---DLAFFHLLTHALFKALLFMCAGAIIHSLGNCQdIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSK-DL 362
Cdd:PRK08377  318 LGTQagvDAGVFHMINHAIVKALLFLAVGYVGITLGGTE-IEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKfRI 396
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 363 IVESMSMGYLNMFVYVVFYLSVglTACYSFRLVYYCFTGEFNllsshglsdepGPMLESMGILIFMVIFGGSLLMWLMFP 442
Cdd:PRK08377  397 ILAGLSAGYTWPVALVLGASVV--EAVYYFRLIHTMWFKGEG-----------ERIRENAAIGIILLLLAALIVVIGIYP 463

                  ....
gi 1999117240 443 TPVF 446
Cdd:PRK08377  464 TPFW 467
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
53-315 6.20e-21

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 96.26  E-value: 6.20e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  53 LDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWdGLGLVSYALVIyyqNV 132
Cdd:PRK08601   70 LDTLAWLMAFFVLTLGFIIQRFSVRYLLGDRSYRKYFALFTFTTGFASLAWLSGDLRLMALCW-GATLLGLTLLI---GL 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 133 KS-----SNAGMLTALTNRIGDVALLMSIAWM-LNFGSWNYVFYLEFPKDGYLG-----IVATFVVLAAITKSAQIPFSS 201
Cdd:PRK08601  146 NKgwkvaREAAKISGMLFLISWLALALAIVWLfIATGEWQLTSVLSNENLAQLGtwektGINLLLILAVMIPAAQWPFQR 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 202 WLPAAMAAPTPVSALVHSStLVTAGVYLLIRFNAAFSGDLLKFLLVLSMMTMFMAGLGANF-EYDLKKIIALSTLSQLGL 280
Cdd:PRK08601  226 WLIESAVAPTPVSAIMHAG-LVNAGGIMLTRFSPLFHDDIAQILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGF 304
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1999117240 281 MISILCLGSHDLAFFHLLTHALFKALLFMCAGAII 315
Cdd:PRK08601  305 MLVQCALGAYSAAIIHLILHGLFKATLFLQSGSAV 339
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
198-446 2.18e-20

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 94.38  E-value: 2.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 198 PFSSWLP-AAMAAPTPVSALvHSSTLVTAGVYLLIRFNAAF----SGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIAL 272
Cdd:COG1008   227 PFHTWLPdAHVEAPTAGSVL-LAGVLLKMGGYGLLRFALPLfpeaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAY 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 273 STLSQLGLM-ISILCLGSHDL--AFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALC 349
Cdd:COG1008   306 SSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDRTHT-RDIADLGGLAKRMPVLAALFLLAALASL 384
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 350 GLPFLSGFYSKDLIVESMsmgYLNMFVYVVF-YLSVGLTACYSFRLVYYCFTGEFNlLSSHGLSDEPGPMLESMGILIFM 428
Cdd:COG1008   385 GLPGTSGFVGEFLVLLGA---FQVNPWLAILaALGLILTAAYLLWMYQRVFFGPLK-EELAELPDLNPRELAVLAPLAAL 460
                         250
                  ....*....|....*...
gi 1999117240 429 VIFGGsllmwlMFPTPVF 446
Cdd:COG1008   461 ILLLG------LYPQPLL 472
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
50-446 1.17e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.10  E-value: 1.17e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  50 TVLLDWMSLLFMSFVLFISAVVINYSEEYM-MGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALV-I 127
Cdd:COG1007    65 MFVVDGFALFFKLLILLAALLVLLLSRDYLeRRGLLRGEFYALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVaF 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 128 YYQNVKSSNAGMLTALTNRIGDVALLMSIAWM------LNFGSWNYVFYLEFPKDGYLGIVATFVVLAAITKSAQIPFSS 201
Cdd:COG1007   145 RRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgsLNLAGIAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHM 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 202 WLP-AAMAAPTPVSALVhsSTLV-TAGVYLLIRF----NAAFSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTL 275
Cdd:COG1007   225 WTPdVYEGAPTPVTAFL--ATAPkIAAFAALLRLlveaFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSI 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 276 SQLG-LMISILCLGSHDL--AFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLP 352
Cdd:COG1007   303 AHAGyLLLGLAAGTPLGVsaALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIP 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 353 FLSGFYSKDLIVES-MSMGYLNMFVYVVfyLSVGLTACYSFRLVYYCFTGEfnllsshglSDEPGPMLESMGILIFMVIF 431
Cdd:COG1007   383 PTAGFFGKFYVFSAaVEAGLYWLAVIAV--LNSVISAYYYLRVVKAMYFDE---------PEEEAPISAPPGLRVALVIA 451
                         410
                  ....*....|....*
gi 1999117240 432 GGSLLMWLMFPTPVF 446
Cdd:COG1007   452 ALLVLLLGIFPGPLL 466
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
192-396 1.00e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 89.24  E-value: 1.00e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 192 TKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFnAAFSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIA 271
Cdd:PRK07234  196 VKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRC-ALDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLA 274
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 272 LSTLSQLGLMISilclgSHDLAFFHLLTHALFKALLFMCAGAiIHSLGNCQDIRYMGGLVSSMPLTCAyfnicNFALCGL 351
Cdd:PRK07234  275 FSTISQLGFILA-----APLVGGLYALAHGLVKSTLFLCAGA-LPSRNFTELISQMLGIGKWIPLTMA-----SFSIAGF 343
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1999117240 352 PFLSGFYSKDLivesmSMGYLNMFVYVVFYLSVGLTACYSFRLVY 396
Cdd:PRK07234  344 PLLAGFVSKVL-----TLKNLLPWQAIALNLAAVGTAASFWKFIF 383
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
150-402 6.61e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 80.38  E-value: 6.61e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 150 VALLMSIAWMLNFGSW-NYVFYLEFPKDGYLGIVATFVVLAAITKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGV 227
Cdd:PRK07691  178 VAILYSVVGTLNMADIsVKIAELSAGQTGLITVVAILFLFVFATKAGLFPLYFWLPGSyYAPPIAIAALF-GALLTKVGV 256
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 228 YLLIR-FNAAFSGDL---LKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILCLGSHDL---AFFHLLTH 300
Cdd:PRK07691  257 YAIARtFTLFFSHDTsftHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAIYYLIHD 336
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 301 ALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVES-MSMGYlnmFVYVV 379
Cdd:PRK07691  337 MIVKAALFLLIGIMIKITGT-TDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGtFEAGF---YVSGI 412
                         250       260
                  ....*....|....*....|....
gi 1999117240 380 FYLSVGLTACYS-FRLVYYCFTGE 402
Cdd:PRK07691  413 IVLLSSLLVLYSvIKIFLKGFWGE 436
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
179-436 8.69e-15

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 76.91  E-value: 8.69e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 179 LGIVATFVVLAAITKSAQIPFSsWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF----SGDLLKFLLVLSMMTMF 254
Cdd:PRK12663  206 LTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpqeRELLHPLLATMAAITMV 284
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 255 MAGLGANFEYDLKKIIALSTLSQLGLMISILCLGSHDL---AFFHLLTHALFKALLFMCAGAIIHsLGNCQDIRYMGGLV 331
Cdd:PRK12663  285 IGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLY 363
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 332 SSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVE-SMSMGYlnmFVYVVFYLSVGLTACYS-FRLVYYCFTGE------- 402
Cdd:PRK12663  364 RKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQgALDNGA---YILLALMLITSLITMYSlFRIFFLAYWGDkdgeevn 440
                         250       260       270
                  ....*....|....*....|....*....|....
gi 1999117240 403 FNLLSSHGLsdepGPMLESMGILIFMVIFGGSLL 436
Cdd:PRK12663  441 FKPIPLYRK----LPLSILAVVVIAMGIAAEPLL 470
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
50-360 2.15e-14

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 75.63  E-value: 2.15e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  50 TVLLDWMSLLFMSFVLFISAVVINYSEEYMmGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIY- 128
Cdd:PRK05777   68 MLVVDGFALFLKGLILLASLLALLLARPYL-EDRGRGEFYLLVLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAALr 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 129 YQNVKSSNAGMLTALTNRIGDVALLMSIAWM------LNFGSWNYVFYLEFPKDGYLGIVATFVVLAAITKSAQIPFSSW 202
Cdd:PRK05777  147 RDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgsLSFAGIAKALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMW 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 203 LPAAM-AAPTPVSALVHSSTLVtAGVYLLIR-FNAAFSG---DLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQ 277
Cdd:PRK05777  227 TPDVYeGAPTPVTAFLATAPKI-AAFAVLLRlLVVAFGGlseDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAH 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 278 LG-LMISILCLGSHDL--AFFHLLTHALFKALLFMCAGAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFL 354
Cdd:PRK05777  306 AGyLLVGLAAGTAEGYsaVLFYLLAYLFMTLGAFGVISLLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPT 385

                  ....*.
gi 1999117240 355 SGFYSK 360
Cdd:PRK05777  386 AGFWGK 391
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
171-386 1.25e-13

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 73.71  E-value: 1.25e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 171 LEFPKDGYLGIVATFVVLAAItksaqIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNAAFSGDLLKF---LL 246
Cdd:PRK08042  176 LPLGSDIWLLGVIGFGLLAGI-----IPLHGWVPQAHAnASAPAAALF-STVVMKIGLLGILTLSLLGGNAPLWWgvaLL 249
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 247 VLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILCLGSHDLA--------------FFHLLTHALFKALLFMCAG 312
Cdd:PRK08042  250 VLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVLFLGAG 329
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1999117240 313 AIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVES-MSMGYLNMFVYVVF--YLSVGL 386
Cdd:PRK08042  330 SVWFRTGH-RDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSfFKLSNSGAFVARLLgpLLAVGL 405
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
178-433 3.30e-13

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 71.89  E-value: 3.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 178 YLGIVATFVVlaaitKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNAAF----SGDLLKFLLVLSMMT 252
Cdd:TIGR01972 206 FLAFFIAFAV-----KVPLFPLHTWLPDAHVeAPTAGSVIL-AGVLLKMGTYGFLRFNLPLfpdaSLYFAPVLAALGVIA 279
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 253 MFMAGLGANFEYDLKKIIALSTLSQLGL-MISILCLGSHDL--AFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGG 329
Cdd:TIGR01972 280 IIYGALIALAQTDIKRLIAYSSISHMGFvLLGIFSFNELGIsgAVFQMISHGLITAALFLLVGVLYERAHT-RDIAKYGG 358
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 330 LVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVesmsMGYLNMFVYVVFY--LSVGLTACYSFRLVYYCFTGEFNLLS 407
Cdd:TIGR01972 359 LANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL----LGSFKVNPVVAFLaaLGIVLAAAYMLTLYKRVFFGELSNPE 434
                         250       260
                  ....*....|....*....|....*.
gi 1999117240 408 SHGLSDEPGPMLESMGILIFMVIFGG 433
Cdd:TIGR01972 435 VAEFPDLNGREIAVLAPLVVLILFLG 460
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
197-446 2.18e-12

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 69.46  E-value: 2.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 197 IPFSSWLPAAMA-APTPVSALvHSSTLVTAGVYLLIRFN----AAFSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIA 271
Cdd:PRK05846  228 FPLHTWLPDAHVqAPTAGSVL-LAGILLKMGAYGLLRFSlplfPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIA 306
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 272 LSTLSQLG-LMISILCLGSHDL--AFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYFNICNFAL 348
Cdd:PRK05846  307 YSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLHT-RDIADYGGLAKVMPVLAAFFLFFAMAS 385
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 349 CGLPFLSGFYSKDLIVesmsMGYLNMFVYVVFYLSVG--LTACYSFRLVYYCFTGEFNlLSSHGLSDEPGPMLESMGILI 426
Cdd:PRK05846  386 LGLPGTSGFVGEFLIL----LGSFQVNPVIAFIATTGliLAAVYSLWLYQRVMFGPVK-NEVAKLKDLNGRELLILLPLV 460
                         250       260
                  ....*....|....*....|
gi 1999117240 427 FMVIFGGsllmwlMFPTPVF 446
Cdd:PRK05846  461 ALLLLLG------VYPKPLL 474
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
185-433 4.13e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 68.61  E-value: 4.13e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 185 FVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR-FNAAFSGDLLKFLLVLSMMTMFMAGLG---- 259
Cdd:PRK12662  214 FIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRiVYDVFKANFVFTTLPFNNVFMILAALAivfg 293
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 260 ---ANFEYDLKKIIALSTLSQLGLMISILCLGSHD---LAFFHLLTHALFKALLFMCAGAIIHSLGNCqDIRYMGGLVSS 333
Cdd:PRK12662  294 svlAILSKDIKRIFAYSSISHIGYIILAVSLNTYYglaAAVAYIVNHSIVKSALFMVSGSISYHFGTT-KLEDCLNLWKS 372
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 334 MPLTCAYFNICNFALCGLPFLSGFYSKDLIVESM--SMGYLNMFVYVVfylSVGLTACYSFRLV-YYCFTGEFNLLSSHG 410
Cdd:PRK12662  373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFikSNAWIGLVVLLV---GSGLSVIYVWKIVeALYFESRMVESKAND 449
                         250       260
                  ....*....|....*....|....
gi 1999117240 411 -LSDEPGPMLESMGILIFMVIFGG 433
Cdd:PRK12662  450 kAFKTPNAMVLCIWIMAILSIIVG 473
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
193-360 5.29e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 68.46  E-value: 5.29e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 193 KSAQIPFSSWLPAAM-AAPTPVSAlVHSSTLVTAGVYLLIRFNAA-FSGDLL-KFLLVLSMMTMFMAGLGANFEYDLKKI 269
Cdd:PRK12665  222 KAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLlFPGGGLdTLLMVVALLTMVVGILGAIAQSDIKRL 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 270 IALSTLSQLGLMISILCLGS-HDL--AFFHLLTHALFKALLFMCAGaIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNF 346
Cdd:PRK12665  301 LSFTLVSHIGYMVFGIALSTvAGLsgAIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPAL 379
                         170
                  ....*....|....
gi 1999117240 347 ALCGLPFLSGFYSK 360
Cdd:PRK12665  380 NLGGIPPFSGFIGK 393
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
192-388 8.89e-12

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 67.65  E-value: 8.89e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 192 TKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNAAFSGDLLK-----FLLVLSMMTMFMAGLGANFEYD 265
Cdd:PRK06458  226 TKVGLFPMHAWLPDAHSeAPSPVSALL-SGVLLNVALYAVLRYYILIDAAIGSdfpgrLLLIFGLLSVLVAAFFLLRQRD 304
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 266 LKKIIALSTLSQLGLMISILCLGShDLAFF----HLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVSSMPLTCAYF 341
Cdd:PRK06458  305 IKRLFAYSSIEHMGLIAFALGIGG-PLGIFaallHMLNHSLTKSAIFFASGNVLQKYGT-RDINVIRGLLKVSPLTGWGL 382
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1999117240 342 NICNFALCGLPFLSGFYSKDLIVES-MSMGYLNMFVYVVFYLSVGLTA 388
Cdd:PRK06458  383 MLGALAIAGMPPFGVFISEFLILTAgLARGPLLIAILLLLLLTLAFAA 430
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
53-399 7.20e-11

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 64.58  E-value: 7.20e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  53 LDWMSLLFMSFVLFISAVVINYSEEYM-MGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIY-YQ 130
Cdd:TIGR01770  68 VDNFALLIKLILLLSTLLTFFFALSYLsKEKINKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLkRK 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 131 NVKSSNAGMLTALTNRIGDVALLMSIAWM------LNFGSWNYVFYLEFPKDGYLGIVATFVVLAAITKSAQIPFSSWLP 204
Cdd:TIGR01770 148 SRFSTEAGLKYFILGAFSSGLLLFGISLIygftgsLNFEDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVP 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 205 AAM-AAPTPVSALVHSSTLVtAGVYLLIR----FNAAFSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLG 279
Cdd:TIGR01770 228 DVYeGAPTPVTAFFSIVPKI-AIFAVFLRlflyILFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVG 306
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 280 LMISILCLGSHDL---AFFHLLTHALFKALLFMCAgaIIHSLGNCQDIRY---MGGLVSSMPLTCAYFNICNFALCGLPF 353
Cdd:TIGR01770 307 YILIGLLAGTLEGikaVLFYIFIYALMSLGAFGVL--SLLRSYKDEWIEYisdFAGLFKTNPILAILILIFMFSLAGIPP 384
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1999117240 354 LSGFYSKDLIVESMSMGYLNMFVYVVFYLSVgLTACYSFRLVYYCF 399
Cdd:TIGR01770 385 LAGFFGKFYVFFALLKSGLYWLAVIAVLTSV-IGAFYYLRVVKVMY 429
ndhB CHL00049
NADH dehydrogenase subunit 2
54-360 2.76e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 62.71  E-value: 2.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  54 DWMSLLFMSFVLFISAVVINYSEEYMM-GDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYY-QN 131
Cdd:CHL00049   78 NNFNEIFQFLILLCSTLCIPLSVEYIEcTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTkKD 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 132 VKSSNAGMLTALTNRIGDVALLMSIAWMlnFGSWNYVFYLEFPKDGYL-----GIVATFVVLAAIT-----KSAQIPFSS 201
Cdd:CHL00049  158 VRSNEATMKYLLMGGASSSILVYGFSWL--YGLSGGEIELQEIVNGLIntqmyNSPGISIALIFITvgigfKLSLAPFHQ 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 202 WLPAAM-AAPTPVSALVhSSTLVTAGVYLLIR-FNAAF---SGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLS 276
Cdd:CHL00049  236 WTPDVYeGSPTPVVAFL-SVTSKVAASALATRiFDIPFyfsSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 277 QLG-LMISILClGSHDLAFFHLLTHALFkaLLFMCAGA----IIHSLGNCQD-IRYMGGLVSSMPLTCAYFNICNFALCG 350
Cdd:CHL00049  315 QIGyVIIGIIV-GDSNDGYASMITYMLF--YIFMNLGTfaciVLFGLRTGTDnIRDYAGLYTKDPFLALSLALCLLSLGG 391
                         330
                  ....*....|
gi 1999117240 351 LPFLSGFYSK 360
Cdd:CHL00049  392 IPPLAGFFGK 401
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
177-360 4.02e-10

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 62.08  E-value: 4.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 177 GYLGIVATFVVLAAITKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNA-----AFSGDLLKFLLVLSM 250
Cdd:PRK08676  203 SVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAkAPSVVSALL-SGTVLNIGIYGILRLSAllrqsGAAEQFSNVLIGLGI 281
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 251 MTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILCLGSHDLAF---FHLLTHALFKALLFMCAGaIIHSLGNCQDIRYM 327
Cdd:PRK08676  282 FSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRSDRFDRI 360
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1999117240 328 GGLVSSMPLTCAYFNICNFALCGLPFLSGFYSK 360
Cdd:PRK08676  361 FDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSK 393
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
178-359 3.93e-08

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 55.81  E-value: 3.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 178 YLGIVATFVVlaaitKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNAAFSGD----LLKFLLVLSMMT 252
Cdd:PRK12561  188 YAGFLIAFGV-----KLPIFPLHTWLPDAHGeASAPVSMIL-AGVLLKMGGYALIRFNVQMLPDahvyFAPALAILGVVN 261
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 253 MFMAGLGANFEYDLKKIIALSTLSQLGLMIsiLCLGSHDL-----AFFHLLTHALFKALLFMCAGAI---IHSLGncqdI 324
Cdd:PRK12561  262 IIYGALNAFAQDNVKRRLAYSSVSHMGFVL--LGIAAFTDlgisgAMLQMISHGLIAAALFFLTGVTyerTHTLS----I 335
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1999117240 325 RYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYS 359
Cdd:PRK12561  336 PNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
89-441 5.24e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 55.51  E-value: 5.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  89 ILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQNVKSSNAGMLTALTNRIGDVALLMSIAwmlnfgswnyv 168
Cdd:PRK12664   66 MLCYLLYYISSIAAISSSSLTLVVIGFEFMALSALMIIAAGCPGGNIGAFIHYACVHFFSGVLLLVGAS----------- 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 169 fyLEFPKDGYLGIVATFVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFnaaFSGDllKFLLVL 248
Cdd:PRK12664  135 --GQAQNGQYTGYCKLLFMLGLLINCACFPASSWVVDAYPAASNFGIIVLSLFTTKVAALVLLLF---FSGE--EILLFL 207
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 249 SMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMI-SILCLGS----HDLAFFHLLTHALFKALLFMCAGAIIHSLGNCqD 323
Cdd:PRK12664  208 GIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIiAIGFSGSsgvaIGILILQIVLSVVYQTLLFMVADSVINRTRKF-N 286
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 324 IRYMGGLVsSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVESMSMGYLNMFVYVVFY--LSVGLTACYSFRLVYYCFtg 401
Cdd:PRK12664  287 LNRVGGLF-KMSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLTLVLYKKLFliCSLLLFASVGLKFFWYAF-- 363
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1999117240 402 eFNLLSSHGLSDEPGPMLE-SMGILIFMVIFGGSLLMWLMF 441
Cdd:PRK12664  364 -ISKSKSKPEAEKVYIGSKlSMIILVLICVVLGMFNSYLLF 403
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
197-415 1.94e-07

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 53.94  E-value: 1.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 197 IPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGD----LLKFLLVLSMMTMFMAGLGANFEYDLKKIIAL 272
Cdd:PRK02546  230 VPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDahaqFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAY 309
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 273 STLSQLGLMI----SILCLGSHDlAFFHLLTHALFKALLFMCAGAI---IHSLgncqDIRYMGGLVSSMPLTCAYFNICN 345
Cdd:PRK02546  310 SSISHMGFVLigigSFTDLGTSG-AMLQMISHGLIGASLFFLVGATydrTHTL----MLDEMGGVGQKMRKMFAMWTACS 384
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1999117240 346 FALCGLPFLSGFYSKDLIVESM--SMGYLNMF-VYVVFYLSVG--LTACYSFRLVYYCFTGEFN--LLSSHGLSD-EP 415
Cdd:PRK02546  385 LASLALPGMSGFVAELMVFVGFatSDAYTLPFrVVVVFLAAVGviLTPIYLLSMLREIFFGPENkeLVSHEKLVDaEP 462
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
54-360 3.51e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.13  E-value: 3.51e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  54 DWMSLLFMSFVLFISAVVINYSEEYM-MGDVNLTRFILLVVMFVLSMMLLIISPNLVSILLGWDGLGLVSYALVIYYQNV 132
Cdd:PRK02504   77 DNLSIAFRAIIALSTLVTLLMSWRYVeQSGTPLGEFAAILLTATLGGMFLSGATELVMIFISLETLSIASYLLTGYMKRD 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 133 KSSNAGMLTALTNRIGDVALL---MSIAWMLNFGSWNYVFYLE--FPKDGYLGIVATFVVLAAIT-KSAQIPFSSWLPAA 206
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFlygSSLLYGLSGGSTQLSAIALalITSPSLGLALALVFVIAGIAfKISAVPFHQWTPDV 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 207 M-AAPTPVSALVhSSTLVTAGVYLLIRF-NAAFSG--DLLKFLL-VLSMMTMFMAGLGANFEYDLKKIIALSTLSQLG-L 280
Cdd:PRK02504  237 YeGSPTPVVAFL-SVGSKAAGFALAIRLlVTAFPSfdEQWKLLFtALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGfV 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 281 MISILClGSHD---LAFFHLLTHalfkalLFMCAGA----IIHSLGNCQD-IRYMGGLVSSMPLTCAYFNICNFALCGLP 352
Cdd:PRK02504  316 MIGLVA-GTEAgyaSMVFYLLAY------LFMNLGAfacvILFSLRTGTDqISDYAGLYQKDPLLTLGLSLCLLSLGGIP 388

                  ....*...
gi 1999117240 353 FLSGFYSK 360
Cdd:PRK02504  389 PLAGFFGK 396
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
245-371 1.22e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 51.19  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 245 LLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLMISILCLG---SHDLAFFHLLTHALFKALLFMCAGaIIHSLGNC 321
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGtplGIVAGIFHAINHVIYKSALFLGAG-IVSYRTKT 347
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1999117240 322 QDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVE-SMSMGY 371
Cdd:PRK06277  348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQaAMQANM 398
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
197-363 8.98e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.08  E-value: 8.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 197 IPFSSWLP-AAMAAPTPVSALVhSSTLVTAGVYLLIRFNAAFSGD----LLKFLLVLSMMTMFMAGLGANFEYDLKKIIA 271
Cdd:PRK06473  222 VPFHTWLPdAHVEASTPVSVLL-AGVLLKLGTYGLLRFGVGLFPEawvyLAPWLATWAVVSVLYGASCAIAQKDMKKMVA 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 272 LSTLSQLGLMI---------SILClgshdlAFFHLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVS---SMPLTCA 339
Cdd:PRK06473  301 YSSIGHMGYILlaaaaatplSILA------AVFQMISHGLISALLFLLVGVVYKKTGS-RDVDVLRGLLNperGLPITGS 373
                         170       180
                  ....*....|....*....|....
gi 1999117240 340 YFNICNFALCGLPFLSGFYSKDLI 363
Cdd:PRK06473  374 LMILGVMASAGIPGMVGFIAEFLV 397
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
160-392 1.15e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.91  E-value: 1.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 160 LNFGSWNYVFYLEFPKDGYLGIVatfvvLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAF-- 237
Cdd:MTH00226  215 LTLASCSHVVSEQTQKWIFLGIF-----LAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPIlp 289
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 238 --SGDLLKFLLVLSMMTMFMAGLGANFEYDLKKIIALSTLSQLGLmiSILCLGSHDL-----AFFHLLTHALFKALLFMC 310
Cdd:MTH00226  290 lgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGL--VSITLVTHDIigltgSIFIMLAHGIVSSLLFIL 367
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 311 AgAIIHSLGNCQDIRYMGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVesMSMGYLNMFVYVVFYLSVGLTACY 390
Cdd:MTH00226  368 V-TILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSI--LSSFNWNPIIGVFVCSGVILSAVY 444

                  ..
gi 1999117240 391 SF 392
Cdd:MTH00226  445 SF 446
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
178-357 1.35e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 44.66  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 178 YLGIVATFVVLAaiTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKF----LLVLSMMTM 253
Cdd:MTH00217  206 YFIFLGFFLSLA--IKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYfsplIQTLSLLAI 283
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 254 FMAGLGANFEYDLKKIIALSTLSQLGLMisILCLGSHDL-----AFFHLLTHALFKALLFMcAGAIIHSLGNCQDIRYMG 328
Cdd:MTH00217  284 IYGSLTTCRQVDLKRIIAYSSVAHMGLV--TLGIFSHTIqglvaAIFLMLAHGLVSSALFI-AVTFLYERHHTRLIKYYR 360
                         170       180
                  ....*....|....*....|....*....
gi 1999117240 329 GLVSSMPLTCAYFNICNFALCGLPFLSGF 357
Cdd:MTH00217  361 GMVITMPLFGILMLLLVLANASIPLSCNF 389
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
40-88 3.45e-04

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 38.56  E-value: 3.45e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1999117240  40 LSLNSVSLVFTVLLDWMSLLFMSFVLFISAVVINYSEEYMMGDVNLTRF 88
Cdd:pfam00662   2 LSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARF 50
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
181-447 1.01e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.01  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 181 IVATFVVLAAITKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNAAFSGDLLKF----LLVLSMMTMFMA 256
Cdd:PRK07363  206 ILLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLvapgLAIIGTISVIYG 285
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 257 GLGANFEYDLKKIIALSTLSQLGlMISILCLGSHDLAFF----HLLTHALFKALLFMCAGAIIHSLGNcQDIRYMGGLVS 332
Cdd:PRK07363  286 ALSAIAQKDIKRMVAYSSIGHMG-YILVAAAAGTQLSLLgavaQMISHGLILALLFHLVGIVERKVGT-RDLDVLNGLMN 363
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 333 ---SMPLTCAYFNICNFALCGLPFLSGFYSKDLIVE-SMSMGYLNMFVYVVfylSVGLTACYSFRLV-YYCFTGEFNLLS 407
Cdd:PRK07363  364 pirGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQgSFSTFPIPTLLCIV---ASGLTAVYFVILLnRTCFGRLDNKLA 440
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1999117240 408 SHG--LSDEPGPMLESMGILIFMVIFGGSLLMWLMFPTPVFI 447
Cdd:PRK07363  441 YYPkvLWSEKIPALILTALILFLGVQPNWLVRWSEPTTTAMV 482
ndhD CHL00011
NADH dehydrogenase subunit 4
178-432 1.10e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 41.85  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 178 YLGIVATFVVlaaitKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFN--------AAFSgdllKFLLVLS 249
Cdd:CHL00011  214 YIGFLIAYAV-----KLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINmellphahSIFS----PWLVIVG 284
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 250 MMTMFMAGLGANFEYDLKKIIALSTLSQLGLMI----SILCLGSHDlAFFHLLTHALFKALLFMCAGAiihslgNCQDIR 325
Cdd:CHL00011  285 AIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIigigSITDTGLNG-AILQIISHGFIGAALFFLAGT------SYDRIR 357
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 326 Y-----MGGLVSSMPLTCAYFNICNFALCGLPFLSGFYSKDLIVESM--SMGYLNMF-VYVVFYLSVG--LTACYSFRLV 395
Cdd:CHL00011  358 LvyldeMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIitSQKYLLMPkILITFVMAIGmiLTPIYLLSML 437
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1999117240 396 YYCFTG--EFNLLSSHGLSDEPGPMLESMGILIFMVIFG 432
Cdd:CHL00011  438 RQMFYGykLFNVPNSYFFDSGPRELFISICILLPVIGIG 476
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
39-369 1.79e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 41.31  E-value: 1.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240  39 ILSLNSVSLVFTVLLDWMSllFMSFVLFISAVVINYSEEYMMGDVNLTRFI-LLVVMFVLSMMLLIISPNLVSILLGWDG 117
Cdd:PRK06459   26 LTMISSIILLITSIYEYNG--VLSFFSIISTIVWILASLYSIEYDHYGKWLsSLYILTILGMAIVLTSDNYLLFLAGWEI 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 118 LGLVSYALVIYYQNvKSSNAGMLTALtNRIGDVALLMSIAWMLNF-GSWNYVFYLEFpkdgylgIVATFVVLAAITKSAQ 196
Cdd:PRK06459  104 MTIPSYVAIALTKK-NKRPAFVFMAF-GELSTVLILAGFAWAFIIsGTTNFSYLPSP-------VPLILASFGFIIKMGM 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 197 IPF--SSWLPAAMA-APTPVSAlVHSSTLVTAGVYLLIRF----NAAFSGDLLKFLLVLSMMTMFMAGLGANFEYDLKKI 269
Cdd:PRK06459  175 MPFlvSEWLPIAHGnAPSNFSA-ILSATMTLMGVYGILKMtiltQTIPIGYFGLTILAIGAFSILFGALYAYVSENVKGL 253
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1999117240 270 IALSTLSQLGLMISILCL------GSHDLAFFHLLT-------HALFKALLFMCAGAIihslgNCQDIRYMGGLVSSMPL 336
Cdd:PRK06459  254 LAFSTIENNGAILVALGLymvtkqLITSIEHFSLITvilysfaHSVAKTGLFLSSGLQ-----EKQSITYSKKIRNRWIE 328
                         330       340       350
                  ....*....|....*....|....*....|...
gi 1999117240 337 TCAYfnICNFALCGLPFLSGFYSKDLIVESMSM 369
Cdd:PRK06459  329 LGLT--LLASSLSGLLPNIGGVASWLLLESLFM 359
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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