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Conserved domains on  [gi|52220997|ref|YP_086854|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Diplometopon zarudnyi]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 551.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    1 MTLLATTSNALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPA 80
Cdd:MTH00111   2 PTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   81 LALGLAMMMWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLI 160
Cdd:MTH00111  82 LALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  161 AGNFTLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNT 240
Cdd:MTH00111 162 SGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  241 LSTILFLCPS-IDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLPP 319
Cdd:MTH00111 242 LTTILFLNPStLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPP 321


                 ..
gi 52220997  320 TY 321
Cdd:MTH00111 322 QL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 551.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    1 MTLLATTSNALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPA 80
Cdd:MTH00111   2 PTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   81 LALGLAMMMWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLI 160
Cdd:MTH00111  82 LALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  161 AGNFTLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNT 240
Cdd:MTH00111 162 SGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  241 LSTILFLCPS-IDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLPP 319
Cdd:MTH00111 242 LTTILFLNPStLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPP 321


                 ..
gi 52220997  320 TY 321
Cdd:MTH00111 322 QL 323
NADHdh pfam00146
NADH dehydrogenase;
10-306 2.82e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 332.52  E-value: 2.82e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    10 ALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMM 89
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    90 W--IPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLT 167
Cdd:pfam00146  82 FavIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   168 TLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFL 247
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 52220997   248 CPSIDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLW 306
Cdd:pfam00146 242 GGWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 10-302 3.81e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 310.14  E-value: 3.81e-105
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  10 ALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMM 89
Cdd:COG1005  15 ALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLA 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  90 WIPLPM--PYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNF-TL 166
Cdd:COG1005  95 FAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLnLS 174

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997 167 TTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILF 246
Cdd:COG1005 175 EIVEAQAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLF 254

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52220997 247 L------CPSIDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLA 302
Cdd:COG1005 255 LggwlgpFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 551.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    1 MTLLATTSNALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPA 80
Cdd:MTH00111   2 PTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   81 LALGLAMMMWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLI 160
Cdd:MTH00111  82 LALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  161 AGNFTLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNT 240
Cdd:MTH00111 162 SGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  241 LSTILFLCPS-IDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLPP 319
Cdd:MTH00111 242 LTTILFLNPStLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPP 321


                 ..
gi 52220997  320 TY 321
Cdd:MTH00111 322 QL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-320 9.49e-179

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 496.84  E-value: 9.49e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    1 MTLLATTSNALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPA 80
Cdd:MTH00071   2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   81 LALGLAMMMWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLI 160
Cdd:MTH00071  82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  161 AGNFTLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNT 240
Cdd:MTH00071 162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  241 LSTILFLCPSIDLP-PQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLPP 319
Cdd:MTH00071 242 LSTILFLGSTYNHLqPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321


                 .
gi 52220997  320 T 320
Cdd:MTH00071 322 M 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-319 4.91e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 489.89  E-value: 4.91e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    1 MTLLATTSNALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPA 80
Cdd:MTH00134   3 STLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   81 LALGLAMMMWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLI 160
Cdd:MTH00134  83 LALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  161 AGNFTLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNT 240
Cdd:MTH00134 163 TGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  241 LSTILFLCPS-IDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLPP 319
Cdd:MTH00134 243 LSAILFLGAShIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 9-319 2.96e-170

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 475.27  E-value: 2.96e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    9 NALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMM 88
Cdd:MTH00104   5 NILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALT 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   89 MWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLTT 168
Cdd:MTH00104  85 MWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLST 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  169 LMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFLC 248
Cdd:MTH00104 165 LITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLG 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52220997  249 PSIDLP-PQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLPP 319
Cdd:MTH00104 245 AFHNPYmPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPP 316
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 9-319 3.13e-146

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 413.92  E-value: 3.13e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    9 NALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMM 88
Cdd:MTH00218   7 NLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   89 MWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLTT 168
Cdd:MTH00218  87 LWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  169 LMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFLC 248
Cdd:MTH00218 167 FNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLG 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 52220997  249 PSIDLppqltnLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLPP 319
Cdd:MTH00218 247 TSLTT------INLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-321 2.68e-145

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 412.06  E-value: 2.68e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    1 MTLLATTSNALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPA 80
Cdd:MTH00040   1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   81 LALGLAMMMWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLI 160
Cdd:MTH00040  81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  161 AGNFTLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNT 240
Cdd:MTH00040 161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  241 LSTILFLCPS--IDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLP 318
Cdd:MTH00040 241 LSVILFLGGGspFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILP 320


                 ...
gi 52220997  319 PTY 321
Cdd:MTH00040 321 PNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 3-316 3.41e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 337.87  E-value: 3.41e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    3 LLATTSNALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALA 82
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   83 LGLAMMMWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAG 162
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  163 NFTLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLS 242
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 52220997  243 TILFLCPSidlppqlTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNG 316
Cdd:MTH00195 241 TILFLGGG-------GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
10-306 2.82e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 332.52  E-value: 2.82e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    10 ALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMM 89
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    90 W--IPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLT 167
Cdd:pfam00146  82 FavIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   168 TLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFL 247
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 52220997   248 CPSIDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLW 306
Cdd:pfam00146 242 GGWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 17-303 2.72e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 325.29  E-value: 2.72e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   17 ILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMMWIPLPMP 96
Cdd:MTH00143  14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   97 YALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLTTLMMTQTTT 176
Cdd:MTH00143  94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  177 PMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFLCPSIDLpPQ 256
Cdd:MTH00143 174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVL-FL 252

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 52220997  257 LTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLAL 303
Cdd:MTH00143 253 LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 9-305 3.75e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 324.80  E-value: 3.75e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    9 NALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMM 88
Cdd:MTH00193   7 NFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   89 MWIPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLTT 168
Cdd:MTH00193  87 IWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLD 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  169 LMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFLC 248
Cdd:MTH00193 167 FMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLG 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 52220997  249 PSidlppqLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCL 305
Cdd:MTH00193 247 GD------LLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLL 297
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 10-319 4.97e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 312.44  E-value: 4.97e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   10 ALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMM 89
Cdd:MTH00216  12 ILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIV 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   90 W--IPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLT 167
Cdd:MTH00216  92 WgvIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSIT 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  168 TLMMT-QTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILF 246
Cdd:MTH00216 172 EIVLAqNNGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILF 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52220997  247 LCPSIDLPPQLTNLNII--TKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLPP 319
Cdd:MTH00216 252 LGGWLSPIKYFKGGAGWfgLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 10-319 1.02e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 311.66  E-value: 1.02e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   10 ALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMM 89
Cdd:MTH00054   8 ILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   90 W--IPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLT 167
Cdd:MTH00054  88 WgvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLT 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  168 TLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFL 247
Cdd:MTH00054 168 EIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFL 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 52220997  248 ----CPSIDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTLPLSMNGLPP 319
Cdd:MTH00054 248 ggwlVISGPTSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 10-302 3.81e-105

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 310.14  E-value: 3.81e-105
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  10 ALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMM 89
Cdd:COG1005  15 ALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLA 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  90 WIPLPM--PYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNF-TL 166
Cdd:COG1005  95 FAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLnLS 174

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997 167 TTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILF 246
Cdd:COG1005 175 EIVEAQAGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLF 254

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52220997 247 L------CPSIDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLA 302
Cdd:COG1005 255 LggwlgpFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 11-310 5.14e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 306.58  E-value: 5.14e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   11 LLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMMW 90
Cdd:MTH00225   8 LIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILW 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   91 IPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLTTLM 170
Cdd:MTH00225  88 SLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  171 MTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFLCPS 250
Cdd:MTH00225 168 YNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGF 247

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  251 IDlppqLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWQTTL 310
Cdd:MTH00225 248 FV----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
2-306 4.19e-100

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 297.10  E-value: 4.19e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    2 TLLATTSNALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPAL 81
Cdd:PRK06076   8 LLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   82 ALGLAMMMWIPLPM--PYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVL 159
Cdd:PRK06076  88 AFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVL 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  160 IAGNFTLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMN 239
Cdd:PRK06076 168 LAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVS 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 52220997  240 TLSTILFL-------CPSIDLPPQLTnlnIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLW 306
Cdd:PRK06076 248 ALITTLFLggwlppfPLGGGIPGAIW---FVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 2-321 7.87e-90

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 271.89  E-value: 7.87e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997    2 TLLATTSNALLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPAL 81
Cdd:MTH00029   5 SYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPII 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   82 ALGLAMMMWIPLPMPYA--LTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVL 159
Cdd:MTH00029  85 SFTLAILAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVIL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  160 IAGNFTLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMN 239
Cdd:MTH00029 165 CVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMS 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  240 TLSTILFL---CPSIDLPPQL--------------TNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLA 302
Cdd:MTH00029 245 CMMTIFFLggwLSPLDGIPTPpeafsifeqiasskSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLG 324

                        330
                 ....*....|....*....
gi 52220997  303 LCLWQTTLPLSMNGLPPTY 321
Cdd:MTH00029 325 LVILTAGILIGFNGVPPPF 343
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 11-305 2.24e-85

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 259.33  E-value: 2.24e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   11 LLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMMW 90
Cdd:MTH00010  10 LLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLW 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   91 IPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLTTLM 170
Cdd:MTH00010  90 SLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKII 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  171 MTQTTTPMIFaTWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFL--C 248
Cdd:MTH00010 170 MSQYSWILLM-IIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTsfI 248

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 52220997  249 PSIdlppQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCL 305
Cdd:MTH00010 249 PSI----FISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 11-301 1.59e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 212.84  E-value: 1.59e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   11 LLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMMW 90
Cdd:MTH00090   3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   91 IPLPMPYALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLTTLM 170
Cdd:MTH00090  83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  171 MTQTTTpmifatwpMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFLcps 250
Cdd:MTH00090 163 SLSLFV--------IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFF--- 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 52220997  251 idlppqltNLNIITKTTLLTIgFLWIRASYPRFRYDQLMHLLWKQFLPLTL 301
Cdd:MTH00090 232 --------KFSFLMLFLIFSL-LIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 11-312 2.63e-50

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 170.90  E-value: 2.63e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   11 LLYIIPILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMMW 90
Cdd:CHL00032  34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSY 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   91 IPLPMPY--ALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLTT 168
Cdd:CHL00032 114 LVIPFGYhlVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVD 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  169 LMMTQTTTPmiFATW-----PMA-MMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLS 242
Cdd:CHL00032 194 IVEAQSKYG--FWGWnlwrqPIGfIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFV 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  243 TILFL------CPSIDLPPQLTNLNI---------ITKTTLLTIGFLWI----RASYPRFRYDQLMHLLWKQFLPLTLAL 303
Cdd:CHL00032 272 TVLYLggwnlsIPYIFIPELFEINKTggvfgttigIFITLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISLGN 351


                 ....*....
gi 52220997  304 CLWQTTLPL 312
Cdd:CHL00032 352 LLLTTSFQL 360
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 17-301 1.75e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 166.64  E-value: 1.75e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   17 ILIAVAFLTLLERKVLGQMQLRKGPNLVGPFGLLQPVADGIKLFTKEPLRPIKASPMLFLAMPALALGLAMMMWIPLPMP 96
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   97 YALTNMNMGLLFMLALSSMMVYSILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVLIAGNFTLTTLMMTQTTT 176
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  177 PMIFatWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIMMMNTLSTILFLCPSIDLppq 256
Cdd:MTH00058 174 VLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVS--- 248

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 52220997  257 ltnlnIITKTTLLTigFLWIRASYPRFRYDQLMHLLWKQFLPLTL 301
Cdd:MTH00058 249 -----IMLLFHLLF--FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
9-306 6.39e-30

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 115.28  E-value: 6.39e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997   9 NALLYIIPILIAVAFLTLL----ERKVLGQMQLRKGPnlvgpfGLLQPVADGIKLFTKEPLRPIKASPmLFLAMPALALG 84
Cdd:COG0650   2 MLILLALLQLLLALLLAPLllgiIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVALA 74

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997  85 --LAMMMWIPLPMPYALTNMN---MGLLFMLALSSMMvysILWSGWASNSKYALLGALRAVAQTISYEVTLGLIVLSIVL 159
Cdd:COG0650  75 amLLAALLVPVLTTGPPLSFSgdlIVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALAL 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997 160 IAGNF---TLTTLMMTQTTTPMIFATWPMAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIM 236
Cdd:COG0650 152 LAGSTslsDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLF 231

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52220997 237 MMNTLSTILFLCPSIDLPPQLTNLNIITKTTLLTIGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLW 306
Cdd:COG0650 232 VLLSLFVNLFLPWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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