Taxonomy browser (Rhodopseudomonas palustris)

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Taxonomy browser (Rhodopseudomonas palustris)

Rhodopseudomonas palustris

Taxonomy ID: 1076 (for references in articles please use NCBI:txid1076)

current name

Rhodopseudomonas palustris (Molisch 1907) van Niel 1944 emend. Venkata Ramana et al. 2012

type strain of Rhodopseudomonas palustris: personal::ATH 2.1.6, ATCC :17001

homotypic synonym:

"Rhodobacillus palustris" Molisch 1907, effective name¹⁾

"Rhodomonas palustris" (Molisch 1907) Kluyver and van Niel 1936, effective name²⁾

Rhodobacter palustris

NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Rhodobacterium capsulatum" Molisch 1907, effective name³⁾

heterotypic synonym

"Rhodovibrio parvus" Molisch 1907, effective name⁴⁾

heterotypic synonym

Rhodopseudomonas rutila Akiba et al. 1983

type strain of Rhodopseudomonas rutila: personal::R1, ATCC :33872, DSM :8283, DSM :5869, JCM :2524

Lineage( full ): cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Nitrobacteraceae; Rhodopseudomonas

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	6,416	5,454	16
Protein	209,196	181,925	-
Structure	297	108	-
Genome	1	1	-
Popset	29	29	-
Conserved Domains	4	4	-
GEO Datasets	340	310	-
PubMed Central	2,478	2,478	-
Gene	54,686	9,944	-
SRA Experiments	443	334	-
Protein Clusters	6,882	6,882	-
Identical Protein Groups	109,754	103,789	-
BioProject	112	88	-
BioSample	429	342	11
Assembly	36	28	-
PubChem BioAssay	1	-	-
Taxonomy	11	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Akiba T et al. (1983)

Akiba, T., Usami, R., and Horikoshi, K. "Rhodopseudomonas rutila, a new species of nonsulfur purple photosynthetic bacteria." Int. J. Syst. Bacteriol. (1983) 33:551-556. [No PubMed record available.]

Hiraishi a et al. (1992)

Hiraishi, A., Santos, T.S., Sugiyama, J., and Komagata, K. "Rhodopseudomonas rutila is a later subjective synonym of Rhodopseudomonas palustris." Int. J. Syst. Bacteriol. (1992) 42:186-188. [No PubMed record available.]

Kluyver AJ & van Niel CB (1936)

Kluyver, A.J., and van Niel, C.B. "Prospects for a natural system of classification of bacteria." Zentralbl. Bakterol. Parasitenkd. Infectinskr. Hyg., Abt. II (1936) 94:369-403. [No PubMed record available.]

Robertson S et al. (2018)

Robertson, S., Rayyan, A., Meyer, T., and Kyndt, J. "Draft whole-genome sequence of the purple nonsulfur photosynthetic bacterium Rhodopseudomonas rutila R1." Microbiol. Resour. Announc. (2018) 7:e01267-18.

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Venkata Ramana V et al. (2012)

Venkata Ramana, V., Kalyana Chakravarthy, S., Shalem Raj, P., Vinay Kumar, B., Shobha, E., Ramaprasad, E.V.V., Sasikala, C., and Ramana, C.V. "Descriptions of Rhodopseudomonas parapalustris sp. nov., Rhodopseudomonas harwoodiae sp. nov. and Rhodopseudomonas pseudopalustris sp. nov., and emended description of Rhodopseudomonas palustris." Int. J. Syst. Evol. Microbiol. (2012) 62:1790-1798.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Rhodopseudomonas palustris	meta-databases	BacDive
Rhodopseudomonas palustris (Molisch 1907) van Niel 1944 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 28 Organisms	organism-specific	Genomes On Line Database
Rhodopseudomonas palustris	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
33 records from this provider	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Rhodopseudomonas palustris (Molisch, 1907) van Niel, 1944	taxonomy/phylogenetic	Ocean Biogeographic Information System
Rhodopseudomonas palustris (T) \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Rhodopseudomonas palustris (Molisch, 1907) van Niel, 1944	taxonomy/phylogenetic	World Register of Marine Species

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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