Taxonomy browser (Planctomycetaceae)

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Taxonomy browser (Planctomycetaceae)

Planctomycetaceae

Taxonomy ID: 126 (for references in articles please use NCBI:txid126)

current name

Planctomycetaceae Schlesner and Stackebrandt 1987 emend. Dedysh et al. 2020, emended name¹⁾ in [Dedysh SN et al. (2020)]

homotypic synonym:

Planctomycetaceae Schlesner and Stackebrandt 1987 emend. Ward 2011, emended name²⁾

Planctomycetaceae Schlesner and Stackebrandt 1987 emend. Scheuner et al. 2014, emended name³⁾

Planctomycetaceae Schlesner and Stackebrandt 1987

NCBI BLAST name: planctomycetes
Rank: family
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; PVC group; Planctomycetota; Planctomycetia; Planctomycetales

Entrez records
Database name	Subtree links	Direct links
Nucleotide	119,994	1
Protein	578,337	2
Structure	17	-
Genome	69	-
Popset	209	208
Conserved Domains	3	3
GEO Datasets	3	-
PubMed Central	1,261	452
Gene	14,258	-
SRA Experiments	144	1
Protein Clusters	11,077	1
Identical Protein Groups	1,512,414	2
BioProject	99	1
BioSample	1,382	2
Assembly	1,153	-
Taxonomy	281	1

Notes:

1) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
2) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
3) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.

Comments and References:

Dedysh SN et al. (2020), PubMed: abstract

Dedysh, S.N., Kulichevskaya, I.S., Beletsky, A.V., Ivanova, A.A., Rijpstra, W.I.C., Damsté, J.S.S., Mardanov, A.V., and Ravin, N.V. "Lacipirellula parvula gen. nov., sp. nov., representing a lineage of planctomycetes widespread in low-oxygen habitats, description of the family Lacipirellulaceae fam. nov. and proposal of the orders Pirellulales ord. nov., Gemmatales ord. nov. and Isosphaerales ord. nov." Syst. Appl.Microbiol. (2020) 43(1):126050.

Euzeby JP & Kudo T (2001)

Euzeby, J.P., and Kudo, T. "Corrigenda to the Validation Lists." Int. J. Syst. Evol. Microbiol. (2001) 51(5):1933-1938.

Lindsay MR et al. (2001)

Lindsay, M.R., Webb, R.I., Strous, M., Jetten, M.S., Butler, M.K., Forde, R.J., and Fuerst, J.A. "Cell compartmentalisation in planctomycetes: novel types of structural organisation for the bacterial cell." Arch. Microbiol. (2001) 175:413-429.

List of Changes in Taxonomic Opinion No. 22 (2015)

"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2015) 65:2028-2029.

Scheuner C et al. (2014)

Scheuner, C., Tindall, B.J., Lu, M., Nolan, M., Lapidus, A., Cheng, J.-F., Goodwin, L., Pitluck, S., Huntemann, M., Liolios, K., Pagani, I., Mavromatis, K., Ivanova, N., Pati, A., Chen, A., Palaniappan, K., Jeffries, C.D., Hauser, L., Land, M., Mwirichia, R., Rohde, M., Abt, B., Detter, J.C., Woyke, T., Eisen, J.A., Markowitz, V., Hugenholtz, P., Goker, M., Kyrpides, N.C., and Klenk, H.-P. "Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae." Stand. Genomic Sci. (2014) 9:10.

Schlesner H & Stackebrandt E (1986)

Schlesner, H., and Stackebrandt, E. "Assignment of the genera Planctomyces and Pirella to a new family Planctomycetaceae fam. nov. and description of the order Planctomycetales ord. nov." Syst. Appl. Microbiol. (1986) 8:174-176. [No PubMed record available.]

VALIDATION LIST No. 23 (1987)

VALIDATION LIST No. 23. Int. J. Syst. Bacteriol. (1987) 37(2):179-180.

VALIDATION LIST No. 26 (1988)

VALIDATION LIST No. 26. Int. J. Syst. Bacteriol. (1988) 38:328-329.

Ward NL (2011d)

Ward, N.L. "Family I. Planctomycetaceae Schlesner and Stackebrandt 1987, 179VP (Effective publication: Schlesner and Stackebrandt 1986, 175) emend. Ward (this volume)." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 4 (The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyglomi, Gemmatimonadetes, Lentisphaerae, Verrumicrobia, Chlamydiae, and Planctomycetes) (N.R. Krieg, J.T. Staley, D.R. Brown, B.P. Hedlund, B.J. Paster, N.L. Ward, W. Ludwig, and W.B. Whitman, eds.), Springer-Verlag, New York (2011). pp. 880-881. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Planctomycetaceae	taxonomy/phylogenetic	Encyclopedia of life
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
44 records from this provider	organism-specific	Integrated Microbial Genomes
Planctomycetaceae	taxonomy/phylogenetic	Lifemap
LBSN	taxonomy/phylogenetic	List of Bacterial names with Standing in Nomenclature
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Planctomycetaceae	taxonomy/phylogenetic	Ocean Biogeographic Information System
Planctomycetaceae	taxonomy/phylogenetic	World Register of Marine Species
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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