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Taxonomy browser (Coffea arabica)

Coffea arabica

Taxonomy ID: 13443 (for references in articles please use NCBI:txid13443)
current name
Coffea arabica L., 1753
Genbank common name: coffee
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name(s) arabica coffee
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
   Entrez records   
Database name Direct links
Nucleotide 263,557
Protein 72,610
Structure 1
Genome 1
Popset 63
GEO Datasets 148
PubMed Central 2,529
Gene 56,903
SRA Experiments 3,726
Protein Clusters 77
Identical Protein Groups 53,775
BioProject 73
BioSample 2,664
Assembly 4
PubChem BioAssay 92
Taxonomy 1

Comments and References:

image:Coffea arabica
GRIN taxonomy
Name verified on date of entry into database in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.
TROPICOS (Jan 09, 2015)
Name accessed on 9 January 2015, in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/
World Checklist of Rubiaceae (Mar 13, 2017)
Name accessed on 13 March 2017 in: Govaerts, R., Ruhsam, M., Andersson, L., Robbrecht, E., Bridson, D., Davis, A., Schanzer, I. & Sonke, B. World Checklist of Rubiaceae. The Board of Trustees of the Royal Botanic Gardens, Kew. Published on the Internet; http://www.kew.org/wcsp/rubiaceae/

Genome Information

Go to NCBI genomic BLAST page for Coffea arabica

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Coffea arabica taxonomy taxonomy/phylogenetic Arctos Specimen Database
2 records from this provider supplemental materials Dryad Digital Repository
Coffea arabica L. taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Coffea arabica L. taxonomy/phylogenetic Integrated Taxonomic Information System
Coffea arabica taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Coffea arabica (L.) herbarium/museum collections PlantaeDB, University of Bucharest
Coffea arabica taxonomy/phylogenetic Plants of the World Online
Coffea arabica taxonomy/phylogenetic The International Plant Names Index
Coffea arabica L. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Coffea arabica organism-specific WebScipio - eukaryotic gene identification
diArk: Coffea arabica organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
CDC-S48 [1] CDC-S51 [1] CDC-S54 [1] CDC-S58 [1]
CDC-S65 [1] CDC-S66 [1] CDC-S70 [1] CDC-S73 [1]
CDC-S75 [1] CDC-S78 [1] CDC-S79 [1] CDC-S82 [1]
CDC-S85 [1] CDC-S88 [1] CDC-S92 [1] Caturra cultivar Caturra [5 21 4559 4 37 18]
ET12-5 [2] Guatemalan [1 1] Gulmi Local [1] Kshetradeep [1]
Laurina [2 2] NARC-C1 [1] NARC-C2 [1] NARC-C3 [1]
NARC-C4 [1] NARC-C5 [1] Sankhuwasabha Red [1] Syangja Special [1]
bourbon [1 85] cultivar Caturra cultivar Caturra [5 21 4559 4 37 18] selectn-12 devel. Central Coffee Res. Inst., Chikamagalur,India [1 75]
variety
caturra cultivar Caturra [5 21 4559 4 37 18]
cultivar
AR15 [1] AR32 [1] AR41 [1] AR59 [1]
Acaia 47119 [4 1] Agaro [1 1] Alghe [1 1 1] Arabica AK2 [2 2]
Arabica AK3 [2 2] Arabica Natural Terraforte [2 2] Arabica low grade [2 1] Barbaksudan [1 1]
Blue Mountain [9 1 4] Boubon Red and Catuai Red mixed [1 101] Bourbon [2 3 151 3 9 1130] Bourbon Tekicic [1 38]
Bourbon chiroso [2 1] CCCA4 [1 1] CPAC [4 2] CX 2720 (Colombia) [1 1]
Catimor [1 14 26] Catuahi, Caturra, Icatu [2 1] Catuai [1 13 54913 1 16 77] Catuai 144 [4 1]
Catuai 25 [8 2 4] Catuai Red [7 4 4] Catuai Vermelho [4 1 1] Catuai amarelo [1]
Caturra [5 21 4559 4 37 18] Caturra Amarillo [1 1] Caturra Chiroso [1 1 85] Caturra T2308 [19 4 4]
Caturra Yellow [6 3] Caturra red [2 1 83511 67105] Caturra rojo [3 1 2] Caturra rojo T2308 [1 1]
Chiroso [1 1] Ciociee [1 1] Colombia [1 1 1] Dilla [1 1 1]
E007 [4 1 4] E017 [4 1 4] E123A [4 1 4] E237 [8 2 4]
E238 [4 1 4] E464 [4 1 4] E516 [4 1 4] ET-39 [1 23]
ET-39 / 1 [1 23] ET39 [1 11 1 11 1] Ethiopia 167 [1 1 1] Ethiopia 87 [1 1 1]
F-502 [1 1 1] Foumbon [1 1] Guatemalense alto [4 1] Guatemalense baixo [4 1]
H14954-29 [1 1] HB ep [2 2] HDT (Hibrido de Timor) [27] HG ep "Margay" I [2 2]
HG ep "Margay" II [2 2] HG ep "Margay" III [2 2] HG ep "Margay" IV [2 2] Hybrido-de-Timor cultivar Hibrido de Timor [1 5] of Coffea arabica x Coffea canephora
Hybrido-di-Timor cultivar Hybrido-di-Timor [2 1] of Coffea arabica x Coffea canephora IAPAR 59 [1 32 2 11] Iapar-59 [1 32 2 11] Icatu Colombiano [4 1]
Icatu Vermelho [6 1 1] Jacamar [2 2] Kent [4 2 1] Laurina [2 43 158]
Mundo Novo IAC 388-17-1 [81 1] Mundo novo [13 52311 3 14] Obata [6 4 1 6] PW ep [2 2]
Pacorini Silocaf [2 2] Palma 05 [4 1] Purpurenses [4 1] Red Bourbon [2 24]
Red Catuai [36] Rubi [8 2 4 2] Rubi MG1192 [2] Rume Sudan [3 2 1]
S-12 [3 3] S-2790 [1 1] S.2794 [7 7] S.2800 [7 7]
S.288 [21] S.795 [4 3 3] S4Agaro [2 618] SL-28 [1 1 1]
Sabia [4 1] San Bernardo [4 1] San Ramon baixo [4 1] Selection-10 [1 1]
Selection-11 [1 1] Selection-12 [1] Selection-5A [1 1] Selection-6 [1 1]
Selection-7.3 [1 1] Sidamo Grade 2 [2 2] Tafarikela [22 2 20] Tinamous [2 2]
Tipica [1 1 1] Tupi [4 1] Typica CDC-S1 [1] Typica CDC-S2 [1]
Unknown [17 21092] geisha [1 24 8 4 126] iapar59 [1 15 30 26 14] javanica [8 4]
pacamara [8 4] pooled cultivar of Mundo Novo and Catuai [1 1] pooled cultivars Catuai and Mundo Novo [5 5] robusta [8 2]
selectn-12 devel. Central Coffee Res. Inst., Chikamagalur,India [1 75] typica [1 9 8 4 13]
isolate
1 [1 1 1] 10 [1 1 1] 11 [1 1 1] 12 [1 1]
13 [1 1 1 1] 13_CAI [1 1] 14 [1 1] 15 [1 1]
16 [1 1] 17 [1 1] 18 [1 1] 19 [1 1]
2 [1 1 1] 20 [1 1] 20220601602 [1 1 1] 21 [1 1]
22 [1 1] 23 [1 1] 24 [1 1] 3 [1 1 1 1]
3-sn [1 1] 4 [1 1 1 1] 4-sn [1 1] 4ACCH [1 1]
5 [1 1 1] 6 [1 1 1] 6BC [1 1 1] 7 [1 1 1]
8 [1 1 1] 9 [1 1] A1 [1 1 1] A2 [6 6]
A2-10 [1 1] A2-2 [1 1] A2-3 [1 1] A2-5 [1 1]
A3 [7 1 7] A3-13 [1 1] A3-14 [1 1] A3-15 [1 1]
A3-16 [1 1] A31-1 [1 1 1] A31-2 [1 1 1] A311-1 [1 1 1]
A311-2 [1 1 1] A4-1 [1 1] A4-2 [1 1] A5-1 [1 1]
A5-2 [1 1] A6-1 [1 1] A6-3 [1 1] A6-5 [1 1]
A6-6 [1 1] A7-1 [1 1] A7-14 [1 1] A7-3 [1 1]
A7-8 [1 1] ANF1 [1 88] ANSF2 [1 88] AR15 [1 1]
AR32 [1 1] AR41 [1 1] AR59 [1 1] BB [1]
BEG1 [1 88] BS [1] C002 [7 4] C007 [6 3]
C016 [7 4] C034 [7 4] C035 [7 4] C036 [7 4]
C037 [7 4] CCC135-36 [2 1 83511 67105] CDC-S21 [2 1] CDC-S23 [1]
CDC-S3 [1] CDC-S36 [1] CDC-S4 [1] CDC-S5 [1]
CDC-S6 [2 1] CDC-S91 [1] CH1 [1 86] CH2 [1 86]
CH3 [1 86] CHF1 [1 88] CHSF1 [1 88] CM [1 86]
CS [1 12] CT [1] Ca-A650-P1 [2 2 2] Ca-A650-P11 [2 2 2]
Ca-A650-P12 [2 2 2] Ca-A650-P13 [2 2 2] Ca-A650-P2 [2 2 2] Ca-A650-P3 [2 2 2]
Ca-A650-P6 [2 2 2] Ca-A650-P7 [2 2 2] Ca-A650-P8 [2 2 2] Ca-A825-P16 [2 2 2]
Ca-A825-P17 [2 2 2] Ca-A825-P18 [2 2 2] Ca-A825-P21 [2 2 2] Ca-A825-P22 [2 2 2]
Ca-A825-P23 [2 2 2] Ca-A825-P26 [2 2 2] Ca-A825-P27 [2 2 2] Ca-A825-P28 [2 2 2]
Ca-A935-P31 [2 2 2] Ca-A935-P32 [2 2 2] Ca-A935-P33 [2 2 2] Ca-A935-P37 [2 2 2]
Ca-A935-P38 [2 2 2] Ca-A935-P41 [2 2 2] Ca-A935-P42 [2 2 2] Ca-A935-P43 [2 2 2]
Ca-A935-P44 [2 2 2] Carab46A_S1 [1 1 1] Carab46A_S2half [1 1 1] Carab46A_S3 [1 1 1]
Caturra [5 5] Cv7958 [2 2 2] Cv7960 [2 2 2] Cv7963 [2 2 2]
DASF1 [1 87] DZSF1 [1 88] ES [1] ET39 [6 3 3 3]
F079 [4 1] GESF1 [1 88] GISF1 [1 88] GMG2 [1 88]
GS [1] GSSF1 [1 88] H4 [1] HG [1]
HP1 [1 86] ID1545 [1 24 4] IM [1] IN1 [1 86]
ISG1 [1 88] JIG2 [1 88] KA [1] KOG1 [1 88]
KSA1 [3 1 1] KSA10 [3 2 1] KSA10RTrnLc [1 1] KSA11 [3 2 1]
KSA11RTrnLc [1 1] KSA12 [3 2 2] KSA12RTrnLc [1 1] KSA13 [3 2 2]
KSA13RTrnLc [1 1] KSA15 [3 2 1] KSA15RTrnLc [1 1] KSA16 [3 2 2]
KSA16RTrnLc [1 1] KSA17 [3 2 2] KSA17RTrnLc [1 1] KSA18 [3 2 2]
KSA18RTrnLc [1 1] KSA19 [3 2 2] KSA19RTrnLc [1 1] KSA1RTrnLc [1 1]
KSA2 [2 2] KSA20 [3 2 2] KSA20TrnLc [1 1] KSA21 [3 2 1]
KSA21TrnLc [1 1] KSA22 [3 2 1] KSA22TrnLc [1 1] KSA23 [3 2 1]
KSA23TrnLc [1 1] KSA24 [3 2 1] KSA24TrnLc [1 1] KSA25 [3 1 1]
KSA25TrnLc [1 1] KSA26 [3 2 1] KSA26TrnLc [1 1] KSA27 [3 2 1]
KSA27TrnLc [1 1] KSA28 [3 2 1] KSA28TrnLc [1 1] KSA29 [3 2 1]
KSA29TrnLc [1 1] KSA2RTrnLc [1 1] KSA3 [3 2 1] KSA30 [3 2 1]
KSA30TrnLc [1 1] KSA31 [3 2 1] KSA31TrnLc [1 1] KSA32 [3 2 1]
KSA32TrnLc [1 1] KSA33 [3 2 1] KSA33TrnLc [1 1] KSA34 [3 2 1]
KSA34TrnLc [1 1] KSA35 [3 2 1] KSA35TrnLc [1 1] KSA36 [3 2 1]
KSA36TrnLc [1 1] KSA37 [3 2 1] KSA37TrnLc [1 1] KSA38 [3 2 1]
KSA38TrnLc [1 1] KSA39 [3 2 1] KSA39TrnLc [1 1] KSA3RTrnLc [1 1]
KSA4 [3 2 1] KSA40 [3 2 1] KSA40TrnLc [1 1] KSA41 [2 2]
KSA41TrnLc [1 1] KSA42 [2 2] KSA42TrnLc [1 1] KSA43 [2 2]
KSA43TrnLc [1 1] KSA44 [3 2 1] KSA44TrnLc [1 1] KSA45 [3 2 1]
KSA45RTrnLc [1 1] KSA46 [3 2 1] KSA46TrnLc [1 1] KSA47 [3 2 1]
KSA47TrnLc [1 1] KSA48 [3 2 1] KSA48TrnLc [1 1] KSA49 [3 2 1]
KSA49TrnLc [1 1] KSA4RTrnLc [1 1] KSA5 [3 2 1] KSA50 [3 2 1]
KSA50TrnLc [1 1] KSA51 [3 2 1] KSA51RTrnLc [1 1] KSA52 [3 2 1]
KSA52TrnLc [1 1] KSA59 [3 2 1] KSA59TrnLc [1 1] KSA5RTrnLc [1 1]
KSA6 [3 2 1] KSA60 [3 2 1] KSA60TrnLc [1 1] KSA61 [3 2 1]
KSA61TrnLc [1 1] KSA62 [3 2 1] KSA62TrnLc [1 1] KSA63 [3 2 1]
KSA63TrnLc [1 1] KSA6RTrnLc [1 1] KSA7 [3 2 1] KSA7RTrnLc [1 1]
KSA8 [3 2 1] KSA8RTrnLc [1 1] KSA9 [3 2 1] KSA9RTrnLc [1 1]
LAG3 [1 88] M10 [1 1] MHF2 [1 88] MHSF2 [1 88]
MI2022_06_016 [1 1 1] NIA01 [2 2 2] NIA02 [2 2 2] NIA03 [2 2 2]
NIA04 [2 2 2] NIA05 [2 2 2] NIA06 [2 2 2] NIA07 [2 2 2]
NIA08 [2 2 2] Natali & Manen 5 G [1 1] O [2 1 2] P13-B [1 1 2]
P13-C [1 1 2] P13-D [1 1 2] P13-E [1 1 2] P13-F [1 1 2]
P13-G [1 1 2] P13-H [1 1 2] P13-I [1 1 2] P3-B [1 1 1]
P3-C [1 1 1] P3-D [1 1 1] P3-E [1 1 1] P3-F [1 1 1]
P3-G [1 1 1] P3-H [1 1 1] P3-I [1 1 1] P5-B [1 1]
P5-C [1 1] P5-D [1 1] P5-E [1 1] P5-F [1 1]
P5-G [1 1] P5-H [1 1] P5-I [1 1] P6-B [1 1]
P6-C [1 1] P6-D [1 1] P6-E [1 1] P6-F [1 1]
P6-G [1 1] P6-H [1 1] P6-I [1 1] P9-B [1 1 1]
P9-C [1 1 1] P9-D [1 1 1] P9-E [1 1 1] P9-F [1 1 1]
P9-G [1 1 1] P9-H [1 1 1] P9-I [1 1 1] S.1495 [1 1]
S.1662 [1 1] S.881/26 [1 1] S.881/29 [1 1] S.882 [1 1]
S1 [7 2] S2 [7 2] S3 [6 2] S4 [7 2]
S5 [6 2] S6 [6 2] S7 [4 1] S8 [4 1]
TA [1] TGG1 [1 88] TY1 [2 172] VR [1]
WB1 [2 2] WC1 [2 2] WEG1 [1 88] WG1 [2 2]
WJ1 [2 2] WLG1 [1 88] WP1 [2 2] WT1 [2 2]
Wild_2032BS [1 1] Y1 [1] Y2 [1] YAF2 [1 88]
YASF1 [1 88] YCG1 [1 88] ZPG1 [1 88]
specimen-voucher
014856 [1] 014857 [1] 014858 [1] 014859 [1]
014860 [1] 014861 [1] 14856 [1 1 1] 14857 [1 1 1]
14858 [1 1 1] 14859 [1 1 1] 14860 [1 1 1] 14861 [1 1 1]
202206016 [1] 228 [1 1 1] 99/0283, PCPT [1 1 1] Borsch & Tesfaye 2707A (Addis Ababa University Natl. Herbarium) [7 4]
Borsch & Tesfaye 2711(Addis Ababa University Natl. Herbarium) [7 4] Borsch & Tesfaye 2714 (Addis Ababa University Natl. Herbarium) [7 4] Borsch & Tesfaye 2715(Addis Ababa University Natl. Herbarium) [7 4] Borsch & Tesfaye 2716 (Addis Ababa University Natl. Herbarium) [7 4]
CM-10 [1] CM-11 [1] CM-12 [1] CM-14 [1]
CM-16 [1] CM-17 [1] CM-19 [1] CM-2 [1]
CM-20 [1] CM-21 [1] CM-22 [1] CM-24 [1]
CM-25 [1] CM-26 [1] CM-27 [1] CM-3 [1]
CM-31 [1] CM-36 [1] CM-37 [1] CM-4 [1]
CM-40 [1] CM-41 [1] CM-48 [1] CM-5 [1]
CM-6 [1] CM-8 [1] CM-9 [1] CMPH-3-sn [1 1]
CMPH-4-sn [1 1] Cultivated (UPS) [4 1] F. Axelrod et al. 2248 (NY) [1 1] Jaufeerally-Fakim 029 (K) [4 2]
MN168arab [4 4 5] MO:Carlsen3307 [4 1 3] N.Swensen-228 [1 1 1] N.Swensen228 [1 1]
NP393 [1 1 1] PS1061MT01 [1] Qiu 96113 [1 1 1] Qiu 96113 (IND) [3 3 3]
Qiu 96113 at IND [2 2 2] R. G. Olmstead 2007-105 (WTU) [1 1 1] SBB-1092 [4 4] Sanders 1803 (FTG) [1 1]
Typica [4 3 2] Wen12914 [1 85] living material Bot. Gard. Geneva [2 2 2]
ecotype
Bourbon [6 3] Typica [7 4] Urrao [4 1 3] Wild Coffee - Bale/Harrena (C034) [7 4]
Wild Coffee - Berhane Kontir (C035) [7 4] Wild Coffee - Boginda (C037) [7 4] Wild Coffee - Bonga (C016) [7 4] Wild Coffee - Yayu/Geba Dogi (C036) [7 4]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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