Taxonomy browser (Bacteroides ovatus)

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Taxonomy browser (Bacteroides ovatus)

Bacteroides ovatus

Taxonomy ID: 28116 (for references in articles please use NCBI:txid28116)

current name

Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016, nom. approb.¹⁾

type strain of Bacteroides ovatus: ATCC :8483, BCRC :10623, CCUG :4943, CIP:103756, DSM :1896, JCM :5824, NCTC :11153

homotypic synonym:

"Pasteurella ovata" (Eggerth and Gagnon 1933) Prévot 1938, effective name²⁾

"Pseudobacterium ovatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name³⁾

"Bacteroides fragilis subsp. ovatus" (Eggerth and Gagnon 1933) Holdeman and Moore 1970, effective name⁴⁾

includes:

bacterium NLAE-zl-C11

bacterium NLAE-zl-C34

bacterium NLAE-zl-C500

bacterium NLAE-zl-C57

bacterium NLAE-zl-H304

bacterium NLAE-zl-H361

bacterium NLAE-zl-H59

bacterium NLAE-zl-H73

NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	80,574	77,759	342
Protein	1,450,482	1,401,278	-
Structure	91	22	-
Genome	2	1	-
Popset	15	15	-
GEO Datasets	695	51	-
PubMed Central	2,043	2,043	-
Gene	15,419	15,419	-
SRA Experiments	691	591	-
Protein Clusters	4,507	4,507	-
Identical Protein Groups	277,722	271,837	-
BioProject	140	128	-
BioSample	2,524	2,416	34
Assembly	821	811	-
PubChem BioAssay	40	40	-
Taxonomy	10	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Cato EP & Johnson JL (1976)

Cato, E.P., and Johnson, J.L. "Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers." Int. J. Syst. Bacteriol. (1976) 26:230-237. [No PubMed record available.]

Eggerth AH & Gagnon BH (1933), other link:http://jb.asm.org/content/25/4/389.long

Eggerth, A.H., and Gagnon, B.H. "The bacteroides of human feces." J. Bacteriol. (1933) 25:389-413. [No abstract available.]

Hahnke RL et al. (2016)

Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.

Holdeman LV & Moore WEC (1970b)

Holdeman, L.V., and Moore, W.E.C. "Bacteroides." In: E.P. Cato, C.S. Cummins, L.V. Holdeman, J.L. Johnson, W.E.C. Moore, R.M. Smibert, and L.DS. Smith (eds.), Outline of Clinical Methods in Anaerobic Bacteriology, 2nd revision, Virginia Polytechnic Institute, Anaerobe Laboratory, Blacksburg, Virginia, (1970). pp. 33-44. [No PubMed record available.]

Krasil'nikov NA (1949)

Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]

List of Changes in Taxonomic Opinion No. 26 (2017)

"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.

Prévot AR (1938)

Prévot, A.R. "Etudes de systematique bacterienne." Ann. Inst. Pasteur (Paris) (1938) 60:285-307. [No PubMed record available.]

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Bacteroides ovatus	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
27 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Bacteroides ovatus	culture/stock collections	Global Catalogue of Microorganisms
37 records from provider	organism-specific	Integrated Microbial Genomes

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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