Taxonomy browser (Pseudomonas)

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Taxonomy browser (Pseudomonas)

Pseudomonas

Taxonomy ID: 286 (for references in articles please use NCBI:txid286)

current name

Pseudomonas Migula 1894 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

homotypic synonym:

Pseudomonas Migula 1894 emend. Yang et al. 2013, emended name¹⁾ in [Yang G et al. (2013e)]

homotypic synonym:

"Chlorobacterium" Guillebeau 1890, nom. rejic. Opin. 6 (not "Chlorobacterium" Lauterborn 1916)

NCBI BLAST name: g-proteobacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Liquidomonas" Orla-Jensen 1909, effective name²⁾

heterotypic synonym

"Loefflerella" Holden 1935, effective name³⁾

heterotypic synonym

Serpens Hespell 1977 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

homotypic synonym:

Serpens Hespell 1977 emend. Rudra and Gupta 2024, emended name⁴⁾ in [Rudra B & Gupta RS (2024)]

heterotypic synonym

Chryseomonas Holmes et al. 1986 in [Holmes B et al. (1986)]

homotypic synonym:

Chryseomonas Holmes et al. 1986 emend. Rudra and Gupta 2024, emended name⁵⁾ in [Rudra B & Gupta RS (2024)]

heterotypic synonym

Flavimonas Holmes et al. 1987

common name(s) RNA similarity group I

Lineage( full ): cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae

Entrez records
Database name	Subtree links	Direct links
Nucleotide	5,244,828	514
Protein	53,576,775	1,777,124
Structure	4,544	19
Genome	378	1
Popset	6,700	5,364
Conserved Domains	77	59
GEO Datasets	13,084	16
PubMed Central	198,526	198,450
Gene	1,261,331	-
SRA Experiments	88,597	815
GEO Profiles	141,600	-
Protein Clusters	34,842	20,608
Identical Protein Groups	18,461,724	1,776,640
BioProject	8,703	180
BioSample	110,880	1,622
Assembly	48,312	-
Genetic Testing Registry	2	-
PubChem BioAssay	14,246	75
Taxonomy	30,049	1

Notes:

1) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
5) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.

Comments and References:

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Yang G et al. (2013e), PubMed: abstract

Yang, G., Han, L., Wen, J., and Zhou, S. "Pseudomonas guangdongensis sp. nov., isolated from an electroactive biofilm, and emended description of the genus Pseudomonas Migula 1894." Int. J. Syst. Evol. Microbiol. (2013) 63(12):4599-4605.

Rudra B & Gupta RS (2024), doi: 10.3389/fmicb.2023.1273665, PubMed: abstract

Rudra, B., and Gupta, R.S. "Phylogenomics studies and molecular markers reliably demarcate genus Pseudomonas sensu stricto and twelve other Pseudomonadaceae species clades representing novel and emended genera." Front. Microbiol. (2024) 14:1273665.

Holmes B et al. (1986)

Holmes, B., Steigerwalt, A.G., Weaver, R.E., and Brenner, D.J. "Chryseomonas polytricha gen. nov., sp. nov., a Pseudomonas-like organism from human clinical specimens and formerly known as group Ve-1." Int. J. Syst. Bacteriol. (1986) 36(2):161-165.

Pseudomonas sensu stricto

The genus Pseudomonas is defined here to include the fluorescent pseudomonads and their non-fluorescent relatives, identified by Palleroni et al. (1973) as "rRNA similarity group I".

Pseudomonas (LPSN link)

Chryseomonas (LPSN link)

Flavimonas (LPSN link)

Serpens (LPSN link)

Ait Tayeb L et al. (2005)

Ait Tayeb, L., Ageron, E., Grimont, F., and Grimont, P.A. "Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates." Res. Microbiol. (2005) 156:763-773.

Anzai Y et al. (1997)

Anzai, Y., Kudo, Y., and Oyaizu, H. "The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera." Int. J. Syst. Bacteriol. (1997) 47(2):249-251.

Anzai Y et al. (2000)

Anzai, Y., Kim, H., Park, J.Y., Wakabayashi, H., and Oyaizu, H. "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence." Int. J. Syst. Evol. Microbiol. (2000) 50:1563-1589.

Hespell RB (1977)

Hespell, R.B. "Serpens flexibilis gen. nov., sp. nov., an unusually flexible, lactate-oxidizing bacterium." Int. J. Syst. Bacteriol. (1977) 27:371-381. [No PubMed record available.]

Kessler B & Palleroni NJ (2000)

Kessler, B., and Palleroni, N.J. "Taxonomic implications of synthesis of poly-beta-hydroxybutyrate and other poly-beta-hydroxyalkanoates by aerobic pseudomonads." Int. J. Syst. Evol. Microbiol. (2000) 50:711-713.

Ochi K (1995b)

Ochi, K. "Comparative ribosomal protein sequence analyses of a phylogenetically defined genus, Pseudomonas, and its relatives." Int. J. Syst. Bacteriol. (1995) 45:268-273.

Palleroni NJ et al. (1973)

Palleroni, N.J., Kunisawa, R., Contopoulou, R., and Doudoroff, M. "Nucleic acid homologies in the genus Pseudomonas." Int. J. Syst. Bacteriol. (1973) 23:333-339. [No PubMed record available.]

Young JM & Park DC (2007)

Young, J.M., and Park, D.-C. "Probable synonymy of the nitrogen-fixing genus Azotobacter and the genus Pseudomonas." Int. J. Syst. Evol. Microbiol. (2007) 57:2894-2901.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Chryseomonas	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 3 Organisms	organism-specific	Genomes On Line Database
Pseudomonas	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
63 records from this provider	organism-specific	Integrated Microbial Genomes
Pseudomonas	taxonomy/phylogenetic	Integrated Taxonomic Information System
Pseudomonas	taxonomy/phylogenetic	Lifemap
LBSN	taxonomy/phylogenetic	List of Bacterial names with Standing in Nomenclature
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
2 records from this provider	taxonomy/phylogenetic	Ocean Biogeographic Information System
Pseudomonas \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
2 records from this provider	taxonomy/phylogenetic	World Register of Marine Species
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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