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Taxonomy browser (Photorhabdus)

Photorhabdus

Taxonomy ID: 29487 (for references in articles please use NCBI:txid29487)
current name
Photorhabdus (Boemare et al. 1993) emend. Fischer-Le Saux et al. 1999
NCBI BLAST name: enterobacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 62,915 4
Protein 396,032 35,445
Structure 119 2
Genome 24 1
Popset 75 52
Conserved Domains 3 1
GEO Datasets 37 2
PubMed Central 3,250 3,206
Gene 48,844 -
SRA Experiments 198 -
Protein Clusters 3,631 110
Identical Protein Groups 226,847 35,435
BioProject 118 3
BioSample 412 2
Assembly 185 -
PubChem BioAssay 12 -
Taxonomy 179 1

Comments and References:

Photorhabdus (LPSN link)
Akhurst RJ et al. (1996)
Akhurst, R.J., Mourant, R.G., Baud, L., and Boemare, N.E. "Phenotypic and DNA relatedness between nematode symbionts and clinical strains of the genus Photorhabdus (Enterobacteriaceae)." Int. J. Syst. Bacteriol. (1996) 46:1034-1041.
Boemare NE et al. (1993)
Boemare, N.E., Akhurst, R.J., and Mourant, R.G. "DNA relatedness between Xenorhabdus spp. (Enterobacteriaceae), symbiotic bacteria of entomopathogenic nematodes, and a proposal to transfer Xenorhabdus luminescens to a new genus, Photorhabdus gen. nov." Int. J. Syst. Bacteriol. (1993) 43:249-255. [No PubMed record available.]
Fischer-Le Saux M et al. (1999)
Fischer-Le Saux, M., Viallard, V., Brunel, B., Normand, P., and Boemare, N.E. "Polyphasic classification of the genus Photorhabdus and proposal of new taxa: P. luminescens subsp. luminescens subsp. nov., P. luminescens subsp. akhurstii subsp. nov., P. luminescens subsp. laumondii subsp. nov., P. temperata sp. nov., P. temperata subsp. temperata subsp. nov. and P. asymbiotica sp. nov." Int. J. Syst. Bacteriol. (1999) 49:1645-1656.
Liu J et al. (1997)
Liu, J., Berry, R., Poinar, G., and Moldenke, A. "Phylogeny of Photorhabdus and Xenorhabdus species and strains as determined by comparison of partial 16S rRNA gene sequences." Int. J. Syst. Bacteriol. (1997) 47:948-951.
Rainey FA et al. (1995e)
Rainey, F.A., Ehlers, R.U., and Stackebrandt, E. "Inability of the polyphasic approach to systematics to determine the relatedness of the genera Xenorhabdus and Photorhabdus." Int. J. Syst. Bacteriol. (1995) 45:379-381.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Photorhabdus taxonomy/phylogenetic Encyclopedia of life
Photorhabdus taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Photorhabdus Boemare, Akhurst & Mourant, 1993 taxonomy/phylogenetic Ocean Biogeographic Information System
Photorhabdus | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Photorhabdus Boemare, Akhurst & Mourant, 1993 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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