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Taxonomy browser (Shewanella algae)

Shewanella algae

Taxonomy ID: 38313 (for references in articles please use NCBI:txid38313)
current name
Shewanella algae corrig. Simidu et al. 1990 emend. Thorell et al. 2019
homotypic synonym:
Shewanella algae corrig. Simidu et al. 1990 emend. Nozue et al. 1992
Shewanella alga
type strain of Shewanella algae corrig.: ATCC:51192, CCUG:39064, CIP:106454, IAM:14159, JCM:21037, NBRC:103173, personal::OK-1, DSM:9167, CECT:5071
includes:
Shewanella sp. CNZ-1
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Shewanella haliotis Kim et al. 2007
type strain of Shewanella haliotis: JCM:14758, KCTC:12896, personal::DW01
heterotypic synonym
Shewanella upenei Kim et al. 2012
type strain of Shewanella upenei: CCUG:58400, KCTC:22806, personal::20-23R
includes:
Shewanella sp. 20-23R
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 21,305 20,783 490
Protein 420,517 420,517 -
Structure 1 1 -
Genome 1 1 -
Popset 65 65 -
GEO Datasets 17 17 -
PubMed Central 644 644 -
Gene 13,656 13,656 -
SRA Experiments 56 54 -
Identical Protein Groups 213,191 213,190 -
BioProject 54 51 -
BioSample 279 276 16
Assembly 226 223 -
PubChem BioAssay 7 7 -
Taxonomy 4 1 -

Comments and References:

Simidu U et al. (1990)
Simidu, U., Kita-Tsukamoto, K., Yasumoto, T., and Yotsu, M. "Taxonomy of four marine bacterial strains that produce tetrodotoxin." Int. J. Syst. Bacteriol. (1990) 40:331-336.
Nozue H et al. (1992)
Nozue, H., Hayashi, T., Hashimoto, Y., Ezaki, T., Hamasaki, K., Ohwada, K., Terawaki, Y. "Isolation and characterization of Shewanella alga from human clinical specimens and emendation of the description of S. alga Simidu et al., 1990, 335." Int. J. Syst. Bacteriol. (1992) 42:628-634.
Kim D et al. (2007)
Kim, D., Baik, K.S., Kim, M.S., Jung, B.-M., Shin, T.-S., Chung, G.-H., Rhee, M.S., and Seong, C.N. "Shewanella haliotis sp. nov., isolated from the gut microflora of abalone, Haliotis discus hannai." Int. J. Syst. Evol. Microbiol. (2007) 57:2926-29231.
Trüper HG & De'clari L (1997) (reference relating to orthographic revision)
Trüper, H.G., and De'clari, L. "Taxonomic note: Necessary correction of specific epithets formed as substantives (nouns) 'in apposition'." Int. J. Syst. Bacteriol. (1997) 47(3):908-909. [No PubMed record available.]
Szeinbaum N et al. (2018)
Szeinbaum, N., Kellum, C.E., Glass, J.B., Janda, J.M., and DiChristina, T.J. "Whole-genome sequencing reveals that Shewanella haliotis Kim et al. 2007 can be considered a later heterotypic synonym of Shewanella algae Simidu et al. 1990." Int. J. Syst. Evol. Microbiol. (2018) 68:1356-1360.
Thorell K et al. (2019)
Thorell, K., Meier-Kolthoff, J.P., Sjöling, Å, and Martín-Rodríguez, A.J. "Whole-genome sequencing redefines Shewanella taxonomy." Front. Microbiol. (2019) 10:1861.
Fang Y et al. (2017)
Fang, Y., Wang, Y., Liu, Z., Lu, B., Dai, H., Kan, B., and Wang, D. "Shewanella carassii sp. nov., isolated from surface swabs of crucian carp and faeces of a diarrhoea patient." Int. J. Syst. Evol. Microbiol. (2017) 67:5284-5289.
Kim KK et al. (2011)
Kim, K.-K., Kim, Y.-O., Park, S., Kang, S.-J., Nam, B.-H., Kim, D.N., Oh, T.-K., and Yoon, J.-H. "Shewanella upenei sp. nov., a lipolytic bacterium isolated from bensasi goatfish Upeneus bensasi." J. Microbiol. (2011) 49:381-386.
VALIDATION LIST No. 146 (2012) (Shewanella upenei)
Validation List No. 146: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2012) 62:1443-1445.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Shewanella algae meta-databases BacDive
4 records from this provider organism-specific BioCyc
Shewanella algae corrig. Simidu et al., 1990 taxonomy/phylogenetic Encyclopedia of life
GOLD: 12 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Shewanella algae culture/stock collections Global Catalogue of Microorganisms
15 records from this provider organism-specific Integrated Microbial Genomes
Shewanella algae Simidu, Kita-Tsukamoto, Yasumoto & Yotsu, 1990 taxonomy/phylogenetic Ocean Biogeographic Information System
Shewanella algae | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Shewanella algae Simidu, Kita-Tsukamoto, Yasumoto & Yotsu, 1990 taxonomy/phylogenetic World Register of Marine Species
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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