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Taxonomy browser (Escherichia coli APEC O1)

Escherichia coli APEC O1

Taxonomy ID: 405955 (for references in articles please use NCBI:txid405955)
current name
Escherichia coli APEC O1
equivalent:
Escherichia coli str. APEC O1
Escherichia coli strain APEC O1
NCBI BLAST name: enterobacteria
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Host: bacteria|vertebrates
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
   Entrez records   
Database name Direct links
Nucleotide 445
Protein 6,638
Structure 6
Genome 1
GEO Datasets 6
PubMed Central 4
Gene 5,102
SRA Experiments 12
Identical Protein Groups 6,904
BioProject 5
BioSample 100
Assembly 2
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Johnson TJ et al. (2007)
Johnson, T.J., Kariyawasam, S., Wannemuehler, Y., Mangiamele, P., Johnson, S.J., Doetkott, C., Skyberg, J.A., Lynne, A.M., Johnson, J.R., and Nolan, L.K. "Genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human ExPEC genomes." J. Bacteriol. (2007) 189:3228-3236.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific BioCyc
GOLD: Go0000219 organism-specific Genomes On Line Database
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
640753023: Escherichia coli sv. O1:K1:H7 APEC organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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