Taxonomy browser (Pantoea agglomerans)

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Taxonomy browser (Pantoea agglomerans)

Pantoea agglomerans

Taxonomy ID: 549 (for references in articles please use NCBI:txid549)

current name

Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989

type strain of Pantoea agglomerans: ATCC :27155, CCUG :539, CDC:1461-67, CFBP:3845, CIP:57.51, DSM :3493, ICMP :12534, ICPB:3435, JCM :1236, BCCM/LMG :1286, NBRC :102470, NCTC :9381

homotypic synonym:

Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 (Approved Lists 1980) emend. Beji et al. 1988, nom. approb.¹⁾

includes:

Pantoea sp. ATCC 29923

Pantoea sp. SL1_M5

bacterium G33-1

NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Pantoea herbicola

homotypic synonym:

"Bacterium herbicola" Lohnis 1911, effective name²⁾

"Bacterium herbicola" Geilinger 1921, effective name³⁾

"Pseudomonas herbicola" (Geilinger 1921) de'Rossi 1927, effective name⁴⁾

Erwinia herbicola (Lohnis 1911) Dye 1964

type strain of Erwinia herbicola: ATCC :33243, BCCM/LMG :2565, NCPPB:2971, ICMP :272, DSM :3785, CIP:82.100

heterotypic synonym

"Bacillus milletiae" Kawakami and Yoshida 1920, effective name⁵⁾

heterotypic synonym

Erwinia milletiae (Kawakami and Yoshida 1920) Magrou 1937 (Approved Lists 1980), nom. approb.⁶⁾

type strain of Erwinia milletiae: ATCC :33261, NCPPB:2519, BCCM/LMG :2660

Lineage( full ): cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea agglomerans group

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	19,735	19,286	115
Protein	503,756	481,202	-
Structure	9	8	-
Genome	1	1	-
Popset	378	378	-
GEO Datasets	8	8	-
PubMed Central	3,387	3,387	-
Gene	22,171	22,167	-
SRA Experiments	180	174	-
Protein Clusters	2,078	2,078	-
Identical Protein Groups	259,332	254,614	-
BioProject	173	165	-
BioSample	469	460	8
Assembly	303	293	-
PubChem BioAssay	5	5	-
Taxonomy	11	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

Beijerinck MW (1888)

Beijerinck, M.W. "Cultur des Bacillus radicola aus den Knollchen." Bot. Ztg. (1888) 46:740-750. [No PubMed record available.]

Beji A et al. (1988)

Beji, A., Mergaert, J., Gavini, F., Izard, D., Kersters, K., Leclerc, H., and DeLey, J. "Subjective synonymy of Erwinia herbicola, Erwinia milletiae and Enterobacter agglomerans and redefinition of the taxon by genotypic and phenotypic data." Int. J. Syst. Bacteriol. (1988) 38:77-88. [No PubMed record available.]

Collins MD & Jones D (1982)

Collins, M.D., and Jones, D. "Taxonomic studies on Corynebacterium beticola (Abdou)." J. Appl. Bacteriol. (1982) 52:229-233. [No PubMed record available.] (Note: the type strain of Corynebacterium beticola Abdou 1969 (Approved Lists 1980) should be assigned to the genus Erwinia as Erwinia herbicola; however, such a change has not been validly published.)

de'Rossi G (1927)

de'Rossi, G. Microbiologia agraria e technica. (1927) Unione Tipographico-Editrice Torinese, Torino. [No PubMed record available.]

Dye DW (1964)

Dye, D.W. "The taxonomic position of Xanthomonas trifolii (Huss, 1907) James 1955." N. Z. J. Sci. (1964) 7:261-269. [No PubMed record available.]

Edwards J et al. (2004)

Edwards, J., Baque, E., and Tang, J.S. "Proposal to acknowledge Beijerinck as the original author of the species Pantoea agglomerans. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2004) 54:2437. Published online 13 August 2004. doi:10.1099/ijs.0.02955-0

Ewing WH & Fife MA (1972)

Ewing, W. H., and Fife, M. A. "Enterobacter agglomerans (Beijerinck) comb. nov. (the Herbicola-Lathyri bacteria)." Int. J. Syst. Bacteriol. (1972) 22:4-11. [No PubMed record available.]

Garrity GM et al. (2011)

Garrity, G.M., Labeda, D.P., and Oren, A. "Judicial Commission of the International Committee on Systematics of Prokaryotes. XIIth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 3, 4 and 6 August 2008, Istanbul, Turkey." Int. J. Syst. Evol. Microbiol. (2011) 61:2775-2780.

Gavini F et al. (1989)

Gavini, F., Mergaert, J., Beji, A., Mielcarek, C., Izard, D., Kersters, K., and De Ley, J. "Transfer of Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 to Pantoea gen. nov. as Pantoea agglomerans comb. nov. and description of Pantoea dispersa sp. nov." Int. J. Syst. Bacteriol. (1989) 39:337-345. [No PubMed record available.]

Geilinger H (1921)

Geilinger, H. "Experimentalle Beitrage zur Mikrobiologie der Getreidamehl. I. Ueber koliartige Mehibakterien." Mitt. Lenensm. Hyg., Bern (1921) 12:49-81;105-119;231-262. [No PubMed record available.]

JUDICIAL OPINION 90 (2014)

Tindall, B.J. "The combination Enterobacter agglomerans is to be cited as Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 and the combination Pantoea agglomerans is to be cited as Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989. Opinion 90. Judicial Commission of the International Committee on Systematics of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2014) 64:3582-3583.

Kawakami K & Yoshida S (1920)

Kawakami, K., and Yoshida, S.: Bot. Mag. Tokyo (1920) 34:110-115. [No PubMed record available.]

Lohnis F (1911)

Lohnis, F. Landwirtschaftlich-bakteriologishes Praktikum, (1911). Gebruder Borntraeger, Berlin, pp. 1-156. [No PubMed record available.]

Magrou J (1937)

Magrou, J. In Hauduroy, P., G. Ehringer, A. Urgain, G. Guillot, and J. Mangrou (Editors). Dictionnaire des bacteries pathogenes pour l'homme les animaux et als plantes (1937). Masson and Co., Paris. [No PubMed record available.]

Skerman VBD et al. (1980) (Enterobacter agglomerans)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Skerman VBD et al. (1980) (Erwinia herbicola)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Skerman VBD et al. (1980) (Erwinia milletiae)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Young JM et al. (1996) (reference with type strain information)

Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Pantoea agglomerans	meta-databases	BacDive
12 records from this provider	organism-specific	BioCyc
Pantoea agglomerans (Ewing and Fife 1972) Gavini et al. 1989	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 42 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Pantoea agglomerans	culture/stock collections	Global Catalogue of Microorganisms
39 records from this provider	organism-specific	Integrated Microbial Genomes
Pantoea agglomerans (T) \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
2 records from provider	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov