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Taxonomy browser (Clostridium botulinum)

Clostridium botulinum

Taxonomy ID: 1491 (for references in articles please use NCBI:txid1491)
current name
Clostridium botulinum (van Ermengem 1896) Bergey et al. 1923 (Approved Lists 1980) (van Ermengem 1896) Bergey et al. 1923
type strain of Clostridium botulinum (van Ermengem 1896) Bergey et al. 1923 (Approved Lists 1980): ATCC:25763, CIP:104310, CDC:KA:38, personal::ELTDK 103, VPI:1550, VTT:E:98821
basionym:
"Bacillus botulinus" van Ermengem 1896, effective name 1)
homotypic synonym:
"Botulobacillus botulinus" (van Ermengem 1896) Orla-Jensen 1909, effective name 2)
"Ermengemillus botulinus" (van Ermengem 1896) Heller 1922, effective name 3)
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Pacinia putrifica
homotypic synonym:
"Pacinia putrifica" Trevisan 1889, effective name 4)
heterotypic synonym
Clostridium putrificum (Trevisan 1889) Reddish and Rettger 1922 (Approved Lists 1980), nom. approb. 5)
type strain of Clostridium putrificum: ATCC:25784, BCRC:14514, CCUG:15942, CIP:60.54, DSM:1734, JCM:1410, NCIMB:10677, NCTC:13037, VPI:4440
basionym:
"Bacillus putrificus" (Trevisan 1889) Bienstock 1899, effective name 6)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 82,089 62,156 144
Protein 773,931 590,340 -
Structure 270 231 -
Genome 1 1 -
Popset 44 42 -
Conserved Domains 1 1 -
GEO Datasets 332 317 -
PubMed Central 6,471 6,471 -
Gene 61,832 8,492 -
SRA Experiments 1,331 1,124 -
Protein Clusters 7,947 7,947 -
Identical Protein Groups 386,405 367,470 -
BioProject 186 117 -
BioSample 2,202 1,834 7
Assembly 1,450 1,120 -
PubChem BioAssay 304 260 -
Taxonomy 279 1 -

Notes:

Comments and References:

image:Clostridium botulinum
Bergey DH et al. (1923)
Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]
Collins MD & East AK (2004)
Collins, M.D., and East, A.K. "Phylogeny and taxonomy of the food-borne pathogen Clostridium botulinum and its neurotoxins." J. Appl. Microbiol. (1998) 84:5-17.
Judicial Commission (1997)
Judicial Commission of the International Committee on Systematic Bacteriology. "VIIIth International Congress of Microbiology and Applied Bacteriology. Minutes of the meetings, 17 and 22August 1996, Jerusalem, Israel." Int. J. Syst. Bacteriol. (1997) 47:240-241. [No PubMed record available.]
JUDICIAL OPINION 69 (1999)
Judicial Commission of the International Committee on Systematic Bacteriology. "Rejection of Clostridium putrificum and conservation of Clostridium botulinum and Clostridium sporogenes-Opinion 69." Int. J. Syst. Bacteriol. (1999) 49:339.
Olsen I et al. (1995)
Olsen, I., Johnson, J.L., Moore, L.V.H., and Moore, W.E.C. "Rejection of Clostridium putrificum and conservation of Clostridium botulinum and Clostridium sporogenes. Request for an opinion." Int. J. Syst. Bacteriol. (1995) 45:414. [No PubMed record available.]
Orla-Jensen S (1909)
Orla-Jensen, S. "Die Hauptlinien des naturlichen Bakterien-systems." Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. II (1909) 22:97-98,305-346. [No PubMed record available.]
Skerman VBD et al. (1980) (Clostridium botulinum)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Skerman VBD et al. (1980) (Clostridium putrificum)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Trevisan V (1889)
Trevisan, V. I generie e le specie della Batteriacee. (1889) Zanaboni and Gabuzzi, Milan, pp. 1-35. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clostridium botulinum meta-databases BacDive
4 records from this provider organism-specific BioCyc
Clostridium botulinum (van Ermengem 1896) Bergey et al. 1923 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
28 records from this provider organism-specific Genomes On Line Database
Clostridium botulinum culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
146 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Pacinia putrifica taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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