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Taxonomy browser (Lacticaseibacillus casei)

Lacticaseibacillus casei

Taxonomy ID: 1582 (for references in articles please use NCBI:txid1582)
current name
Lacticaseibacillus casei (Orla-Jensen 1916) Zheng et al. 2020 in [Zheng J et al. (2020)]
Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 (Approved Lists 1980) emend. Dicks et al. 1996, nom. approb. 1)
type strain of Lactobacillus casei: ATCC:393, BCRC:10697, CECT:475, CIP:103137, DSM:20011, IAM:12473, IFO:15883, JCM:1134, KCTC:3109, BCCM/LMG:6904, NBRC:15883, NRRL:B-1922, personal::Hucker03, personal::Orla-Jensen 7, personal::OrlandL-323, personal::Tittsler303, NCIMB:11970, NCDO:161, NCTC:13641
homotypic synonym:
"Streptobacterium casei" Orla-Jensen 1919, effective name 2)
"Lactobacillus casei" Bergey et al. 1923, effective name 3)
"Lactobacterium casei" (Orla-Jensen 1916) Krasil'nikov 1949, effective name 4)
Lactobacillus casei subsp. casei
Lactobacillus sp. NCIM 2363
Lactobacillus sp. NCIM 2732
Lactobacillus sp. T2
Lactobacillus sp. T20
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacillus a" von Freudenreich 1891
homotypic synonym:
"Bacillus a" von Freudenreich 1890
heterotypic synonym
"Bacillus casei a" von Freudenreich and Thoni 1904
heterotypic synonym
"Bacterium casei a" Orla-Jensen 1916
heterotypic synonym
"Caseobacterium vulgare" Orla-Jensen 1916, effective name 5)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 11,619 10,594 394
Protein 86,482 68,862 -
Structure 104 91 -
Genome 1 1 -
Popset 213 213 -
GEO Datasets 130 105 -
PubMed Central 10,013 10,013 -
Gene 22,203 138 -
SRA Experiments 194 154 -
Protein Clusters 2,559 2,559 -
Identical Protein Groups 34,919 27,488 -
BioProject 86 64 -
BioSample 254 212 6
Assembly 51 38 -
PubChem BioAssay 436 436 -
Taxonomy 24 1 -


Comments and References:

Zheng J et al. (2020), PubMed: abstract
Zheng, J., Wittouck, S., Salvetti, E., Franz, C.M.A.P., Harris, H.M.B., Mattarelli, P., O'Toole, P.W., Pot, B., Vandamme, P., Walter, J., Watanabe, K., Wuyts, S., Felis, G.E., Gänzle, M.G., and Lebeer, S. "A taxonomic note on the genus description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae." Int. J. Syst. Evol. Microbiol. (2020) 70(4):2782-2858.
Biavati B (2001)
Biavati, B. "International Committee on Systematic Bacteriology. Subcommittee on the taxonomy of the Bifidobacterium, Lactobacillus and related organisms. Minutes of the meetings, 26 and 29 August 1996, Budapest, Hungary." Int. J. Syst. Evol. Microbiol. (2001) 51:257-258. [No PubMed record available.] (Note: the proposal of Dicks et al. 1996 is supported by the subcommittee.)
Chen H et al. (2000)
Chen, H., Lim, C.K., Lee, Y.K., and Chan, Y.N. "Comparative analysis of the genes encoding 23S-5S rRNA intergenic spacer regions of Lactobacillus casei-related strains." Int. J. Syst. Evol. Microbiol. (2000) 50:471-478.
Dellaglio F et al. (1991)
Dellaglio, F., Dicks, L.M.T., Du Toit, M., and Torriani, S. "Designation of ATCC 334 in place of ATCC 393 (NCDO 161) as the neotype strain of Lactobacillus casei subsp. casei and rejection of the name Lactobacillus paracasei (Collins et al., 1989). Request for an opinion." Int. J. Syst. Bacteriol. (1991) 41:340-342. [No PubMed record available.]
Dellaglio F et al. (2002)
Dellaglio, F., Felis, G.E., and Torriani, S. "The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2002) 52:285-287.
Dicks LM et al. (1996)
Dicks, L.M.T., Du Plessis, E.M., Dellaglio, F., and Lauer, E. "Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp.casei, and rejection of the name Lactobacillus paracasei." Int. J. Syst. Bacteriol. (1996) 46(1):337-340. (Note: this proposal is rejected by the Judicial Commission in Opinion 82.)
Felis GE et al. (2001)
Felis, G.E., Dellaglio, F., Mizzi, L., and Torriani, S. "Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group." Int. J. Syst. Evol. Microbiol. (2001) 51(6):2113-2117.
Hansen PA & Lessel EF (1971)
Hansen, P.A., and Lessel, E.F. "Lactobacillus casei (Orla-Jensen) comb. nov." Int. J. Syst. Bacteriol. (1971) 21:69-71. [No PubMed record available.]
Judicial Commission. "The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name 'Lactobacillus zeae' contravenes Rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82." Int. J. Syst. Evol. Microbiol. (2008) 58(7):1764-1765.
Klein G (2001)
Klein, G. "International Committee on Systematic Bacteriology. Subcommittee on the taxonomy of Bifidobacterium, Lactobacillus and related organisms. Minutes of the meetings, 22 and 23 September 1999, Veldhoven, The Netherlands." Int. J. Syst. Evol. Microbiol. (2001) 51:259-261. [No PubMed record available.]
Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]
Moir K et al. (1997)
Mori, K., Yamazaki, K., Ishiyama, T., Katsumata, M., Kobayashi, K., Kawai, Y., Inoue, N., and Shinano, H. "Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei-related taxa." Int. J. Syst. Bacteriol. (1997) 47:54-57.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Wayne LG et al. (1994) (re Dellaglio et al.)
Wayne, L.G. "Actions of the Judicial Commission of the International Committee on Systematic Bacteriology on requests for opinions published between January 1985 and July 1993." Int. J. Syst. Bacteriol. (1994) 44:177-178. (Note: the request of Dellaglio et al. (1991) is rejected.) [No PubMed record available.]

External Information Resources (NCBI LinkOut)

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Lacticaseibacillus casei meta-databases BacDive
12 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus casei culture/stock collections Global Catalogue of Microorganisms
11 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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