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Taxonomy browser (Lactiplantibacillus plantarum)

Lactiplantibacillus plantarum

Taxonomy ID: 1590 (for references in articles please use NCBI:txid1590)
current name
Lactiplantibacillus plantarum (Orla-Jensen 1919) Zheng et al. 2020 in [Zheng J et al. (2020)]
basionym:
Lactobacillus plantarum (Orla-Jensen 1919) Bergey et al. 1923 (Approved Lists 1980), nom. approb. 1) in [Skerman VBD et al. (1980)]
type strain of Lactobacillus plantarum: ATCC:14917, CCUG:30503, CIP:103151, DSM:20174, IFO:15891, JCM:1149, BCCM/LMG:6907, NBRC:15891, NCIMB:11974, NRRL:B-4496, CGMCC:1.2437, NCTC:13644, CECT:748, BCCM/LMG:6907
homotypic synonym:
"Streptobacterium plantarum" Orla-Jensen 1919, effective name
"Lactobacillus plantari" (sic) (Orla-Jensen 1919) Bergey et al. 1923 (Approved Lists 1980), effective name, orth. var.
homotypic synonym:
"Lactobacterium plantarum" (Orla-Jensen 1919) Krasil'nikov 1949, effective name 2)
includes:
Lactobacillus sp. DMR09
Lactobacillus sp. HC-2
Lactobacillus sp. Lact08
Lactobacillus sp. Lact09
Lactobacillus sp. Lact14
Lactobacillus sp. M6DWS
Lactobacillus sp. S2
Lactobacillus sp. S8
Lactobacillus sp. Z12
Weissella sp. Lact07
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Lactobacillus arabinosus" Fred et al., effective name 3)
heterotypic synonym
Lactobacillus arizonensis Swezey et al. 2000
type strain of Lactobacillus arizonensis: NRRL:B-14768, ATCC:BAA-171, CCUG:45396, CIP:106786, DSM:13273, JCM:11125
includes:
Lactobacillus sp. XJ25
Lineage( full )
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 153,989 149,286 401
Protein 1,895,354 1,777,892 -
Structure 143 86 -
Popset 572 571 -
GEO Datasets 727 593 -
PubMed Central 2,616 2,551 -
Gene 26,585 7,219 -
SRA Experiments 1,758 1,648 -
Protein Clusters 3,057 3,057 -
Identical Protein Groups 327,123 318,520 -
BioProject 994 909 -
BioSample 3,173 3,051 38
Datasets Genome 1,365 1,300 -
PubChem BioAssay 23 23 -
Taxonomy 26 1 -

Notes:

Comments and References:
Zheng J et al. (2020), PubMed: abstract
Zheng, J., Wittouck, S., Salvetti, E., Franz, C.M.A.P., Harris, H.M.B., Mattarelli, P., O'Toole, P.W., Pot, B., Vandamme, P., Walter, J., Watanabe, K., Wuyts, S., Felis, G.E., Gänzle, M.G., and Lebeer, S. "A taxonomic note on the genus description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae." Int. J. Syst. Evol. Microbiol. (2020) 70(4):2782-2858.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Bergey DH et al. (1923)
Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]
Orla-Jensen S (1919)
Orla-Jensen, S.: The lactic acid bacteria. Host & Son, Copenhagen (1919). pp. 1-118. [No PubMed record available.]
Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]
Swezey JL et al. (2000)
Swezey, J.L., Nakamura, L.K., Abbott, T.P., and Peterson, R.E. "Lactobacillus arizonensis sp. nov., isolated from jojoba meal." Int. J. Syst. Evol. Microbiol. (2000) 50(5):1803-1809.
Kostinek M et al. (2005)
Kostinek, M., Pukall, R., Rooney, A.P., Schillinger, U., Hertel, C., Holzapfel, W.H., and Franz, C.M.A.P. "Lactobacillus arizonensis is a later heterotypic synonym of Lactobacillus plantarum." Int. J. Syst. Evol. Microbiol. (2005) 55(6):2485-2489. Published online 29 July 2005. doi:10.1099/ijs.0.63880-0
Falsen E et al. (1999) (reference with type strain information)
Falsen, E., Pascual, C., Sjoden, B., Ohlen, M., and Collins, M.D. "Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov." Int. J. Syst. Bacteriol. (1999) 49:217-221.
Bringel F et al. (1996)
Bringel, F., Curk, M.C., and Hubert, J.C. "Characterization of lactobacilli by Southern-type hybridization with a Lactobacillus plantarum pyrDFE probe." Int. J. Syst. Bacteriol. (1996) 46:588-594.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lactiplantibacillus plantarum meta-databases BacDive
66 records from this provider organism-specific BioCyc
GOLD: 214 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus plantarum culture/stock collections Global Catalogue of Microorganisms
307 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Lactiplantibacillus plantarum (T) | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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