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Taxonomy browser (Lactobacillus amylovorus)

Lactobacillus amylovorus

Taxonomy ID: 1604 (for references in articles please use NCBI:txid1604)
current name
Lactobacillus amylovorus Nakamura 1981
type strain of Lactobacillus amylovorus: ATCC:33620, CCUG:27201, CIP:102989, DSM:20531, JCM:1126, BCCM/LMG:9496, NCAIM B.01458, NRRL:B-4540
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Lactobacillus acidophilus group A3
heterotypic synonym
Lactobacillus sobrius Konstantinov et al. 2006
type strain of Lactobacillus sobrius: personal::OTU171-001, DSM:16698, NCCB:100067
homotypic synonym:
"Lactobacillus sobrius" Konstantinov et al. 2005, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 9,056 8,313 272
Protein 74,238 62,552 -
Structure 4 2 -
Genome 2 1 -
Popset 38 38 -
GEO Datasets 44 44 -
PubMed Central 571 571 -
Gene 10,552 4,289 -
SRA Experiments 57 56 -
Protein Clusters 1,397 1,397 -
Identical Protein Groups 50,377 48,652 -
BioProject 65 59 -
BioSample 196 190 3
Assembly 107 100 -
Taxonomy 7 1 -

Notes:

Comments and References:

Falsen E et al. (1999) (reference with type strain information)
Falsen, E., Pascual, C., Sjoden, B., Ohlen, M., and Collins, M.D. "Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov." Int. J. Syst. Bacteriol. (1999) 49:217-221.
Fujisawa T et al. (1992)
Fujisawa, T., Benno, Y., Yaeshima, T., and Mitsuoka, T. "Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981)." Int. J. Syst. Bacteriol. (1992) 42:487-491.
Jakava-Viljanen M et al. (2008)
Jakava-Viljanen, M., Murros, A., Palva, A., and Bjorkroth, K.J. "Lactobacillus sobrius Konstantinov et al. 2006 is a later synonym of Lactobacillus amylovorus Nakamura 1981." Int. J. Syst. Evol. Microbiol. (2008) 58:910-913.
Konstantinov SR et al. (2005)
Konstantinov, S.R., Smidt, H., and de Vos, W.M. "Representational difference analysis and real-time PCR for strain-specific quantification of Lactobacillus sobrius sp. nov." Appl. Environ. Microbiol. (2005) 71:7578-7581.
Konstantinov SR et al. (2006)
Konstantinov, S.R., Poznanski, E., Fuentes, S., Akkermans, A.D.L., Smidt, H., and de Vos, W.M. "Lactobacillus sobrius sp. nov., abundant in the intestine of weaning piglets." Int. J. Syst. Evol. Microbiol. (2006) 56:29-32. Published online 16 September 2005. doi:10.1099/ijs.0.63508-0
Moore WEC et al. (1985)
Moore, W.E.C., Cato, E.P., and Moore, L.V.H. "Index of the bacterial and yeast nomenclatural changes published in the International Journal of Systematic Bacteriology since the 1980 Approved Lists of bacterial names (1 January 1980 to 1 January 1985)." Int. J. Syst. Bacteriol. (1985) 35(3):382-407. [No PubMed record available.]
Nakamura LK (1981)
Nakamura, L.K. "Lactobacillus amylovorus, a new starch-hydrolyzing species from cattle waste-corn fermentations." Int. J. Syst. Bacteriol. (1981) 31:56-63. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lactobacillus amylovorus meta-databases BacDive
2 records from this provider organism-specific BioCyc
Lactobacillus amylovorus Nakamura 1981 taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus amylovorus culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
3 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
04-1A03 [1 1] 04-1A08 [1 1] 04-2A01 [1 1] 04-4A01 [1 1]
04-4A03 [1 1] 04-4A05 [1 1] 04-5A02 [1 1] 04-5A05 [1 1]
05-1A02 [1 1] 05-1A05 [1 1] 05-1A06 [1 1] 05-1A07 [1 1]
05-1C02 [1 1] 05-1C07 [1 1] 05-1C08 [1 1] 05-1C08B [1 1]
05-3A07 [1 1] 05-3C07 [1 1] 05-5C04 [1 1] 08-1C01 [1]
08-2C02 [1] 08-5C01 [1 1] 08-5C06 [1] 08-5C09 [1]
1-W-5 [1 1] 1-W-6 [1 1] 1394N20 [1 1 1 1868] 14LAB1 [1 1]
16420 [1] 19344 [1] 19345 [1] 20238 [1]
23027 [1] 28CK2 [1 1] 28LAB1 [1 1] 28LAB2 [1 1]
28LAB3 [1 1] 28LAB4 [1 1] 28LAB5 [1 1] 28LAB6 [1 1]
30SC [1 6 2059] 350A [1 52] 352A [1 70] 355A [1 82]
374A [1 61] 4-4 [1] 4825 [1] 5080 [1]
5081 [1] 56LAB2 [1 1] 56LAB3 [1 1] 56LAB4 [1 1]
6489 [1] AAC15 [1 1] AAC60 [1 1] AAC81 [1 1]
AAC82 [1 1] AAC84 [1 1] AAC85 [1 1] AAC86 [1 1]
AAC87 [1 1] AAC98 [1 1] AAC99 [1 1] AD5 [2 2 2]
AF08-3 [1 270 1866] AM96-01M3TA [1 107] ATCC 33198 [11 8 9] ATCC 33620 [11 7 8]
ATCC 33621 [7 7 7] ATCC 33622 [7 7 7] ATCC 53671 [7 7 7] ATCC33620 strain ATCC 33620 [11 7 8]
BCRC 11648 [2 2 2] BCRC 18829 [2 2 2] BF125 [1 69 2018] BF186 [1 157 1981]
BR0315_U1_7B [1 1] Bifido-178-WT-3C [1 112] CACC 735 [1] CACC 736 [1]
CACC736 [1 6 1935] CGMCC 11056 [1 1] CICC 6090 [1 2 2] CIP 102989 [1 1]
CIRM-BIA 2076 [1 169] CIRM-BIA 2077 [1 143] CIRM-BIA 2078 [1 70] CIRM-BIA 669 [1 157]
CP201 [1] Cd54-2 [1] DCE471 [1 12] DSM 16698 [1 330 3 1903]
DSM 20531 strain DSM 20531 [1 2 246 6 3894] of Lactobacillus amylovorus DSM 20531 DSM 20532 [2 2 2] DSM20531 strain DSM 20531 FQ103 [1 1]
HBUAS54368 [1 1] HBUAS54370 [1 1] HUMB07375 [2 1 1 1] I01 [3 1]
I02 [3 1] IQ- no.10 [1] IQ- no.2 [1] IQ- no.9 [1]
IQ-bovine milk no.10 [1] IQ-bovine milk no.2 [1] IQ-bovine milk no.9 [1] Isolated_C16 [1]
JBD401 [1 1 1 1559] JCM 1029 [1] JCM 1032 [1] JCM 10628 [1]
JCM 1126 strain JCM 1126 [4 1] of Lactobacillus amylovorus DSM 20531 JCM 1127 [1] JCM 14931 [1] JCM 2125 [1]
JCM 5807 [1] JCM 5809 [1] JCM 5811 [1] JCM 7720 [1]
JCM 7722 [1] JCM 8774 [1] JCM 8775 [1] JCM 8776 [1]
JCM1126 strain JCM 1126 JCM_1126 strain JCM 1126 KSAU [1 336 2] L-102 [1]
L38 [1 1] L4 [1 2 1760] L62 [1] LAB13 [3 2 2]
LAB16 [1] LAB2 [1] LAB31 [1] LAB52 [3 2 2]
LAB7 [3 2 2] LAB8 [3 2 2] LB31 [1] LGM7-3 [1 1]
LL34 [1] LMG 18179 [7 7 7] LMG 18180 [9 7 9] LMG 18186 [7 7 7]
LMG 18188 [8 8 8] LMG 18190 [7 7 7] LMG 18192 [7 7 7] LMG 9434 [2 2]
LMG P-13139 [1 1] Lao56 [1] M1020A [1 78] M356A [1 64]
M374A [1 51] M388A [1 55] M477A [1 96] M490A [1 84]
M492A [1 58] M581A [1 77] M583A [1 66] M597AA [1 128]
M597B [1 124] M624A [1 114] M668A [1 62] M696A [1 128]
M7.2.1 [2 2 1] M7.2.2 [1 1 1] M7.2.3 [1 1 1] M7.2.4 [1 1 1]
M700A [1 76] M702A [1 59] M718A [1 61] M737A [1 130]
M738A [1 72] M739A [1 89] M834A [1 130] M838B [1 61]
M971A [1 97] M980A [1 120] MB1-5 [1] MT30 [1 2]
MYU 136 [1] Mafic1501 [1] NIAB_GJ001C06 [2] NIAB_GJ011C06 [1]
NRRL B-45 [1 1] NRRLB4540 [1 1] NSK [1 74 1980] OM16-18A [1 77]
OTU171-001 [1] OTU171_1 strain OTU171-001 [1] P1 [1] P8 [1]
PG6 [1] PIL07 [1] PIL10 [1] PIL43 [1]
PIL67 [1] PMRA1 [1 1 33 1528] PMRA3 [1 1 4 1889] PS49 [1]
PS52 [1] PS60 [1] PS68 [1] RF2-14 [1]
RF2-15 [1] S1 [1 7] S60 [1 150 1866 1] SASTRA_SSV [1]
SD418 [1 1 1] SMM131 [1] T13 [3 1] TB-A08 [1]
TCP071 [1 1] TKL145 [1 74 2046] TMPC 43674 [1] TP4.5 [1 1]
TP4.8 [1 1] TP5.6 [1 1] TP6.11B [1 1] TP6.12 [1 1]
TP7.6 [1 1] TP8.6B [1 1] TP8.7 [1 1] YK10 [1 147 1855]
YK3 [1 113 1903] YK6 [1 67 1911] c [1] nttG7 [1 1]
pDX2c [1] pDX3c [1] pDX6c [1] type strain: CIP 102989 [3 3]
type strain: DSM 20531 [2 1] type strain: LMG 9496 [3 3] whlF10 [1 1] zmlG4 [1 1]
zmlH8 [1 1]
isolate
DumLac56 [1 1] DumLac67 [1 1] ERR1606221_bin.3_metaWRAP_v1.3_MAG [59] ERR1855549_bin.12_metaWRAP_v1.3_MAG [90]
ERR2020030_bin.11_metaWRAP_v1.3_MAG [76] ERR2020031_bin.8_metaWRAP_v1.3_MAG [213] ERR5094856_bin.27_metaWRAP_v1.3_MAG [228] IQ-bovine milk no.10 [2]
IQ-bovine milk no.2 [2] IQ-bovine milk no.9 [2] L38 [1] LA12 [1]
LA22 [1] LA55 [1] LA56I [1] LA71 [1]
LA75 [1] LA75I [1] LA80 [1] MAG058 [1 1]
MAG237 [1 1] MGYG-HGUT-00161 [270] SRR11489763_bin.11_metaWRAP_v1.3_MAG [91] SRR11489792_bin.53_metaWRAP_v1.3_MAG [137]
SRR12203246_bin.5_metaWRAP_v1.3_MAG [154] SRR13040390_bin.5_metaWRAP_v1.3_MAG [120] SRR14474051_bin.9_metaWRAP_v1.3_MAG [188] SRR14812369_bin.11_metaWRAP_v1.3_MAG [114]
SRR14812375_bin.1_metaWRAP_v1.3_MAG [124] SRR15057922_bin.19_metaWRAP_v1.3_MAG [95] SRR15725431_bin.32_metaWRAP_v1.3_MAG [176] SRR15732360_bin.11_metaWRAP_v1.3_MAG [104]
SRR17382096_bin.5_metaWRAP_v1.3_MAG [103] SRR17382097_bin.14_metaWRAP_v1.3_MAG [71] SRR341604-bin.14 [53] SRR5240744_bin.22_metaWRAP_v1.3_MAG [89]
SUG1017 [1 1] SUG1748 [1 1] SUG2345 [1 1] SUG2346 [1 1]
SUG2347 [1 1] SUG2348 [1 1] SUG829 [1 1] UBA624 [1 1 1]
UW_AWMP_LAC3_1 [1 1] UW_DM_LAC3_1 [1 1] UW_TS_LAC2_1 [1 1] UW_TS_LAC2_2 [1 1]
UW_TS_LAC5_1 [1 1] W2P29.005 [1 1] W3P1.019 [1 1] W3P12.059 [1 1]
field isolate L38 [1] pig9.6 [1 1]
nat-host
Bos taurus [5] Domestic Pig [9] Homo sapiens [4] Suidae sp. LYD [1]
Sus scrofa [14] Sus scrofa domesticus [10] Wild Boar [19] pig [7]
swine [4] tibetan pig [2]
culture-collection
ATCC:33198 [7 7 7] ATCC:33620 [7 7 7] ATCC:33621 [7 7 7] ATCC:33622 [7 7 7]
ATCC:53671 [7 7 7] CCM:4380 [2 2 2] CIP:102989 [2] CIP:102989T [3 3]
DSM:115528 [68 2018] DSM:20531 [2 241 3 3891 1] JCM:1126 [1] JCM:14931 [1]
JCM:7720 [1] JCM:7722 [1]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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