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Taxonomy browser (Limosilactobacillus fermentum)

Limosilactobacillus fermentum

Taxonomy ID: 1613 (for references in articles please use NCBI:txid1613)
current name
Limosilactobacillus fermentum (Beijerinck 1901) Zheng et al. 2020 in [Zheng J et al. (2020)]
Lactobacillus fermentum Beijerinck 1901 (Approved Lists 1980) emend. Dellaglio et al. 2004, nom. approb. 1)
type strain of Lactobacillus fermentum: ATCC:14931, CCUG:30138, CIP:102980, IFO:15885, BCCM/LMG:6902, NBRC:15885, NCCB:46038, NCDO:1750, NCIMB:11840, NRRL:B-4524, DSM:20052, JCM:1173
homotypic synonym:
"Lactobacterium fermentum" (Beijerinck 1901) van Steenberge 1920, effective name 2)
Lactobacillus sp. NCIM 2165
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacillus d" von Freudenreich 1895
heterotypic synonym
"Bacillus casei d" von Freudenreich and Thoni 1904
heterotypic synonym
Lactobacillus cellobiosus Rogosa et al. 1953 (Approved Lists 1980), nom. approb. 3)
type strain of Lactobacillus cellobiosus: JCM:1137, CECT:562, BCCM/LMG:9846, DSM:20055, NRRL:B-1840, JCM:12530
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 44,045 41,247 443
Protein 283,774 266,886 -
Structure 3 3 -
Genome 1 1 -
Popset 265 265 -
GEO Datasets 66 66 -
PubMed Central 4,045 4,045 -
Gene 13,846 8,244 -
SRA Experiments 361 353 -
Protein Clusters 1,532 1,532 -
Identical Protein Groups 118,651 115,654 -
BioProject 221 204 -
BioSample 832 814 13
Assembly 347 332 -
PubChem BioAssay 12 12 -
Taxonomy 13 1 -


Comments and References:

Zheng J et al. (2020), PubMed: abstract
Zheng, J., Wittouck, S., Salvetti, E., Franz, C.M.A.P., Harris, H.M.B., Mattarelli, P., O'Toole, P.W., Pot, B., Vandamme, P., Walter, J., Watanabe, K., Wuyts, S., Felis, G.E., Gänzle, M.G., and Lebeer, S. "A taxonomic note on the genus description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae." Int. J. Syst. Evol. Microbiol. (2020) 70(4):2782-2858.
Lactobacillus cellobiosus = Lactobacillus fermentum?
The type strain of Lactobacillus cellobiosus (ATCC 11739 = CCRC 12194 = CECT 562 = CIP 102981 = DSM 20055 = LMG 9846 = NCFB 928 = JCM 1137 = HAMBI 68) is listed as Lactobacillus fermentum in the ATCC, CIP, DSMZ, and JCM catalogues of strains, and as Lactobacillus cellobiosus in the CECT, LMG, and HAMBI catalogues of strains.
Dellaglio F et al. (2004)
Dellaglio, F., Torriani, S., and Felis, G.E. "Reclassification of Lactobacillus cellobiosus Rogosa et al. 1953 as a later synonym of Lactobacillus fermentum Beijerinck 1901." Int. J. Syst. Evol. Microbiol. (2004) 54:809-812.
Falsen E et al. (1999) (reference with type strain information)
Falsen, E., Pascual, C., Sjoden, B., Ohlen, M., and Collins, M.D. "Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov." Int. J. Syst. Bacteriol. (1999) 49:217-221.
Rogosa M et al. (1953)
Rogosa, M. et al. "Species differentiation of oral lactobacilli from man including descriptions of Lactobacillus salivarius nov. spec. and Lactobacillus cellobiosus nov. spec." J. Bacteriol. (1953) 65:681-699. [No abstract available.]
Rogosa M & Hansen PA (1971)
Rogosa, M., and Hansen, P.A. "Nomenclatural considerations of certain species of Lactobacillus Beijerinck. Request for an opinion." Int. J. Syst. Bacteriol. (1971) 21:177-186. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Limosilactobacillus fermentum meta-databases BacDive
18 records from this provider organism-specific BioCyc
Lactobacillus cellobiosus Rogosa et al. 1953 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
15 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus fermentum culture/stock collections Global Catalogue of Microorganisms
44 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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