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Taxonomy browser (Shimia abyssi)

Shimia abyssi

Taxonomy ID: 1662395 (for references in articles please use NCBI:txid1662395)
current name
Shimia abyssi (Nogi et al. 2016) Wirth and Whitman 2018 in [Wirth JS & Whitman WB (2018)]
Thalassobius abyssi Nogi et al. 2016, nom. illeg. 1)
type strain of Thalassobius abyssi: personal::JAMH 043, JCM:30900, DSM:100673
homotypic synonym:
Thalassovita abyssi (Nogi et al. 2016) Deshmukh and Oren 2023 in [Deshmukh UB & Oren A (2023e)]
Thalassobius sp. JAMH043
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( abbreviated )
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae
   Entrez records   
Database name Direct links Links from type
Nucleotide 101 100
Protein 8,909 -
Genome 1 -
Popset 1 -
PubMed Central 2 -
SRA Experiments 1 -
Identical Protein Groups 5,066 -
BioProject 2 -
BioSample 1 1
Assembly 1 1
Taxonomy 1 -


Comments and References:

Wirth JS & Whitman WB (2018), PubMed: abstract
Wirth, J.S., and Whitman, W.B. "Phylogenomic analyses of a clade within the roseobacter group suggest taxonomic reassignments of species of the genera Aestuariivita, Citreicella, Loktanella, Nautella, Pelagibaca, Ruegeria, Thalassobius, Thiobacimonas and Tropicibacter, and the proposal of six novel genera." Int. J. Syst. Evol. Microbiol. (2018) 68(7):2393-2411.
Deshmukh UB & Oren A (2023e), PubMed: abstract
Deshmukh, U.B., and Oren, A. "Proposal of Thalassovita gen. nov. and Alloyangia gen. nov. as replacement names for the illegitimate prokaryotic generic names Thalassobius and Yangia, respectively." Int. J. Syst. Evol. Microbiol. (2023) 73(9):006025.
Nogi Y et al. (2016)
Nogi, Y., Mori, K., Makita, H., and Hatada, Y. "Thalassobius abyssi sp. nov., a marine bacterium isolated from cold-seep sediment." Int. J. Syst. Evol. Microbiol. (2016) 66:574-579.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Shimia abyssi meta-databases BacDive
GOLD: Go0367411 organism-specific Genomes On Line Database
2728369514: Shimia abyssi DSM 100673 organism-specific Integrated Microbial Genomes
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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