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Taxonomy browser (Mycolicibacterium smegmatis)

Mycolicibacterium smegmatis

Taxonomy ID: 1772 (for references in articles please use NCBI:txid1772)
current name
Mycolicibacterium smegmatis (Lehmann and Neumann 1899) Gupta et al. 2018 in [Gupta RS et al. (2018), Validation List No. 181 (2018)]
type strain of Mycolicibacterium smegmatis: ATCC:19420, CCUG:21002, CCUG:21815, CIP:104444, DSM:43756, JCM:5866, JCM:6386, NCTC:8159, NRRL:B-14616, VKM:Ac-1239
homotypic synonym:
"Bacillus smegmatis" Trevisan 1889, effective name 1)
"Bacterium smegmatis" (Trevisan 1889) Migula 1900, effective name 1)
"Mycobacterium paratuberculosis smegmatis" Bustinza 1951, effective name 1)
Mycobacterium smegmatis (Trevisan, 1889) Lehmann and Neumann 1899 emend. Nouioui et al. 2018, emended name 2) in [Nouioui I et al. (2018c)]
Mycobacterium smegmatis (Trevisan 1889) Lehmann and Neumann 1899 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 10,116 9,258 365
Protein 254,174 216,751 -
Structure 687 159 -
Genome 1 1 -
Popset 41 41 -
Conserved Domains 1 - -
GEO Datasets 973 594 -
PubMed Central 9,131 9,131 -
Gene 27,376 13,539 -
SRA Experiments 1,896 792 -
Protein Clusters 5,757 5,757 -
Identical Protein Groups 33,325 30,495 -
BioProject 209 122 -
BioSample 1,838 818 42
Assembly 68 61 2
PubChem BioAssay 1,378 1,089 -
Taxonomy 12 1 -

Notes:

Comments and References:

Gupta RS et al. (2018), doi: 10.3389/fmicb.2018.00067, PubMed: abstract
Gupta, R.S., Lo, B., and Son, J. "Phylogenomics and comparative genomic studies robustly support division of the genus Mycobacterium into an emended genus Mycobacterium and four novel genera." Front. Microbiol. (2018) 9:67.
Validation List No. 181 (2018), PubMed: abstract
Validation List No. 181: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2018) 68(5):1411-1417.
Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Lehmann KB & Neumann R (1899)
Lehmann, K.B., and Neumann, R. Lehmann's Medizin, Handatlanten. X. Atlas und Grundriss der Bakteriologie und Lehrbuch der speziellen Bakteriologishcen Diagnostik. 2. Aufl. 1899. pp. 1-497. [No PubMed record available.]
Trevisan V (1889)
Trevisan, V. I generie e le specie della Batteriacee. (1889) Zanaboni and Gabuzzi, Milan, pp. 1-35. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Mycobacterium smegmatis meta-databases BacDive
Mycolicibacterium smegmatis serovar "not known" str. NCTC8159 organism-specific BioCyc
Mycobacterium smegmatis (Trevisan 1889) Lehmann and Neumann 1899 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Mycobacterium smegmatis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
4 records from this provider organism-specific Integrated Microbial Genomes
Mycobacterium smegmatis taxonomy/phylogenetic Lifemap
Bacillus smegmatis taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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