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Taxonomy browser (Rodentibacter caecimuris)

Rodentibacter caecimuris

Taxonomy ID: 1796644 (for references in articles please use NCBI:txid1796644)
current name
Rodentibacter caecimuris (Lagkouvardos et al. 2016) Li 2024 in [Li M (2024)]
Pasteurella caecimuris Lagkouvardos et al. 2016 in [Validation List No. 172 (2016), Lagkouvardos I et al. (2016)]
type strain of Pasteurella caecimuris: personal::AA-424-CC-1, DSM:28627, KCTC:52216
Pasteurella sp. BIL2-426-CC-3
Pasteurella sp. DSM 28627
Pasteurellaceae bacterium AA-424-CC-1
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Rodentibacter heylii Adhikary et al. 2017 in [Adhikary S et al. (2017)]
type strain of Rodentibacter heylii: personal::RGWyllie C57, personal::P309, MCCM:237, ATCC:12555, CCUG:998, HIM:1014-1, personal::CNP 160
homotypic synonym:
Pasteurella pneumotropica biovar Heyl
Pasteurella pneumotropica biotype Heyl
Pasteurella pneumotropica bv. Heyl
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Rodentibacter
   Entrez records   
Database name Direct links Links from type
Nucleotide 2,471 43
Protein 31,962 -
Genome 1 -
Popset 6 -
PubMed Central 11 -
Gene 5,054 -
SRA Experiments 5 -
Identical Protein Groups 15,602 -
BioProject 6 -
BioSample 16 2
Assembly 14 1
Taxonomy 1 -

Comments and References:

Li M (2024), PubMed: abstract
Li, M. "Rodentibacter caecimuris comb. nov., arising from the heterotypic synonymy between Pasteurella caecimuris Lagkouvardos et al. 2016 and Rodentibacter heylii Adhikary et al. 2017." Int. J. Syst. Evol. Microbiol. (2024) 74(2):006279.
Validation List No. 172 (2016), PubMed: abstract
Validation List No. 172: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2016) 66(11):4299-4305.
Lagkouvardos I et al. (2016), PubMed: abstract
Lagkouvardos, I., Pukall, R., Abt, B., Foesel, B.U., Meier-Kolthoff, J.P., Kumar, N., Bresciani, A., MartInez, I., Just, S., Ziegler, C., Brugiroux, S., Garzetti, D., Wenning, M., Bui, T.P.N., Wang, J., Hugenholtz, F., Plugge, C.M., Peterson, D.A., Hornef, M.W., Baines, J.F., Smidt, H., Walter, J., Kristiansen, K., Nielsen, H.B., Haller, D., Overmann, J., Stecher, B., and Clavel, T. "The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota." Nat. Microbiol. (2016) 1(10):16131. [Corrigendum: Nat. Microbiol. (2016) 1(11):16219.]
Adhikary S et al. (2017), PubMed: abstract
Adhikary, S., Nicklas, W., Bisgaard, M., Boot, R., Kuhnert, P., Waberschek, T., Aalbaek, B., Korczak, B., and Christensen, H. "Rodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies." Int. J. Syst. Evol. Microbiol. (2017) 67(6):1793-1806.
Christensen H (2016)
Christensen, H, "Tracing of pathogenic members of Pasteurellaceae and E. coli." QAAFI Science Seminar Series. Genomics -- applications from bacteria to livestock. 6 December 2016. The University of Queensland, St. Lucia, Queensland, Australia.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pasteurella caecimuris meta-databases BacDive
2902511754: Pasteurella caecimuris NM44_TS2-9 organism-specific Integrated Microbial Genomes
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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